RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 CLHC1Q8NHS4 586 aa12.7□□□□□ -0.38
SDC3-201ENST00000336798 EZH1Q92800 747 aaPredicted RBP12.7□□□□□ -0.38
SDC3-201ENST00000336798 SEMA3CQ99985 751 aa12.7□□□□□ -0.38
SDC3-201ENST00000336798 MCMBPQ9BTE3 642 aa12.7□□□□□ -0.38
SDC3-201ENST00000336798 ANKZF1Q9H8Y5 726 aa12.7□□□□□ -0.38
SDC3-201ENST00000336798 ABCB10Q9NRK6 738 aa12.7□□□□□ -0.38
SDC3-201ENST00000336798 ASF1AQ9Y294 204 aa12.7□□□□□ -0.38
SDC3-201ENST00000336798 RWDD3Q9Y3V2 267 aa12.7□□□□□ -0.38
SDC3-201ENST00000336798 BTN3A3O00478 584 aa12.7□□□□□ -0.38
SDC3-201ENST00000336798 CD52P31358 61 aa12.7□□□□□ -0.38
SDC3-201ENST00000336798 GRIA4P48058 902 aa12.7□□□□□ -0.38
SDC3-201ENST00000336798 GRB14Q14449 540 aa12.7□□□□□ -0.38
SDC3-201ENST00000336798 RNF19BQ6ZMZ0 732 aa12.7□□□□□ -0.38
SDC3-201ENST00000336798 LRRN4CLQ8ND94 238 aa12.7□□□□□ -0.38
SDC3-201ENST00000336798 STAG3L4Q8TBR4 150 aa12.7□□□□□ -0.38
SDC3-201ENST00000336798 PNPT1Q8TCS8 783 aaKnown RBP12.7□□□□□ -0.38
SDC3-201ENST00000336798 WNT8BQ93098 351 aa12.7□□□□□ -0.38
SDC3-201ENST00000336798 FNDC11Q9BVV2 318 aa12.7□□□□□ -0.38
SDC3-201ENST00000336798 CLTCL1P53675 1640 aa12.7□□□□□ -0.38
SDC3-201ENST00000336798 NEXMIFQ5QGS0 1516 aa12.7□□□□□ -0.38
SDC3-201ENST00000336798 ATP6AP2A0A1C7CYW4 349 aa12.7□□□□□ -0.38
SDC3-201ENST00000336798 PLOD3O60568 738 aa12.7□□□□□ -0.38
SDC3-201ENST00000336798 ATP6AP2O75787 350 aa12.7□□□□□ -0.38
SDC3-201ENST00000336798 PIK3CGP48736 1102 aa12.7□□□□□ -0.38
SDC3-201ENST00000336798 NAGLUP54802 743 aa12.7□□□□□ -0.38
SDC3-201ENST00000336798 CTBP1Q13363 440 aa12.7□□□□□ -0.38
SDC3-201ENST00000336798 PABPC1LQ4VXU2 614 aaKnown RBP12.7□□□□□ -0.38
SDC3-201ENST00000336798 FIBCD1Q8N539 461 aa12.7□□□□□ -0.38
SDC3-201ENST00000336798 MAML3Q96JK9 1138 aa12.7□□□□□ -0.38
SDC3-201ENST00000336798 SLC25A23Q9BV35 468 aa12.7□□□□□ -0.38
SDC3-201ENST00000336798 ASB7Q9H672 318 aa12.7□□□□□ -0.38
SDC3-201ENST00000336798 DDX4Q9NQI0 724 aaKnown RBP12.7□□□□□ -0.38
SDC3-201ENST00000336798 ENOPH1Q9UHY7 261 aa12.7□□□□□ -0.38
SDC3-201ENST00000336798 C1orf167Q5SNV9 1468 aa12.69□□□□□ -0.38
SDC3-201ENST00000336798 PRODHO43272 600 aa12.69□□□□□ -0.38
SDC3-201ENST00000336798 ATP6V1G1O75348 118 aa12.69□□□□□ -0.38
SDC3-201ENST00000336798 RPLP2P05387 115 aaKnown RBP12.69□□□□□ -0.38
SDC3-201ENST00000336798 TGFB3P10600 412 aa12.69□□□□□ -0.38
SDC3-201ENST00000336798 NELFEP18615 380 aaKnown RBP12.69□□□□□ -0.38
SDC3-201ENST00000336798 TFEBP19484 476 aa12.69□□□□□ -0.38
SDC3-201ENST00000336798 FSTL1Q12841 308 aa12.69□□□□□ -0.38
SDC3-201ENST00000336798 ALLCQ8N6M5 410 aa12.69□□□□□ -0.38
SDC3-201ENST00000336798 PHF10Q8WUB8 498 aaKnown RBP12.69□□□□□ -0.38
SDC3-201ENST00000336798 STARD8Q92502 1023 aa12.69□□□□□ -0.38
SDC3-201ENST00000336798 NELL1Q92832 810 aa12.69□□□□□ -0.38
SDC3-201ENST00000336798 PMEPA1Q969W9 287 aa12.69□□□□□ -0.38
SDC3-201ENST00000336798 MBOAT7Q96N66 472 aa12.69□□□□□ -0.38
SDC3-201ENST00000336798 EVA1BQ9NVM1 165 aa12.69□□□□□ -0.38
SDC3-201ENST00000336798 VPS4AQ9UN37 437 aa12.69□□□□□ -0.38
SDC3-201ENST00000336798 RBMX2Q9Y388 322 aaKnown RBP12.69□□□□□ -0.38
SDC3-201ENST00000336798 ZNF780BQ9Y6R6 833 aa12.69□□□□□ -0.38
SDC3-201ENST00000336798 SLC25A14O95258 325 aaPredicted RBP12.69□□□□□ -0.38
SDC3-201ENST00000336798 HNRNPLP14866 589 aaKnown RBP eCLIP12.69□□□□□ -0.382e-10■■■□□ 14.8
SDC3-201ENST00000336798 RPL9P32969 192 aaKnown RBP12.69□□□□□ -0.38
SDC3-201ENST00000336798 ZNF844Q08AG5 666 aa12.69□□□□□ -0.38
SDC3-201ENST00000336798 PTPRNQ16849 979 aa12.69□□□□□ -0.38
SDC3-201ENST00000336798 MPPE1Q53F39 396 aa12.69□□□□□ -0.38
SDC3-201ENST00000336798 IKBIPQ70UQ0 350 aa12.69□□□□□ -0.38
SDC3-201ENST00000336798 PWWP2AQ96N64 755 aa12.69□□□□□ -0.38
SDC3-201ENST00000336798 TBCBQ99426 244 aa12.69□□□□□ -0.38
SDC3-201ENST00000336798 PIGUQ9H490 435 aa12.69□□□□□ -0.38
SDC3-201ENST00000336798 A0A087X0B3 334 aa12.69□□□□□ -0.38
SDC3-201ENST00000336798 H2AFXP16104 143 aaPredicted RBP12.69□□□□□ -0.38
SDC3-201ENST00000336798 TAS2R41P59536 307 aa12.69□□□□□ -0.38
SDC3-201ENST00000336798 LGALS3BPQ08380 585 aa12.69□□□□□ -0.38
SDC3-201ENST00000336798 CLEC17AQ6ZS10 378 aa12.69□□□□□ -0.38
SDC3-201ENST00000336798 ZNF248Q8NDW4 579 aa12.69□□□□□ -0.38
SDC3-201ENST00000336798 TTLL2Q9BWV7 592 aa12.69□□□□□ -0.38
SDC3-201ENST00000336798 CAB39LQ9H9S4 337 aa12.69□□□□□ -0.38
SDC3-201ENST00000336798 NEK6Q9HC98 313 aa12.69□□□□□ -0.38
SDC3-201ENST00000336798 CCL16O15467 120 aa12.69□□□□□ -0.38
SDC3-201ENST00000336798 GOT1P17174 413 aa12.69□□□□□ -0.38
SDC3-201ENST00000336798 HTR1BP28222 390 aa12.69□□□□□ -0.38
SDC3-201ENST00000336798 SEC13P55735 322 aa12.69□□□□□ -0.38
SDC3-201ENST00000336798 MAPKAPK3Q16644 382 aa12.69□□□□□ -0.38
SDC3-201ENST00000336798 CWF19L1Q69YN2 538 aaKnown RBP12.69□□□□□ -0.38
SDC3-201ENST00000336798 CCSAPQ6IQ19 270 aaPredicted RBP12.69□□□□□ -0.38
SDC3-201ENST00000336798 TNS4Q8IZW8 715 aa12.69□□□□□ -0.38
SDC3-201ENST00000336798 C12orf29Q8N999 325 aa12.69□□□□□ -0.38
SDC3-201ENST00000336798 PPP2R3BQ9Y5P8 575 aa12.69□□□□□ -0.38
SDC3-201ENST00000336798 SHBGP04278 402 aa12.69□□□□□ -0.38
SDC3-201ENST00000336798 CHRNGP07510 517 aa12.69□□□□□ -0.38
SDC3-201ENST00000336798 NOS2P35228 1153 aa12.69□□□□□ -0.38
SDC3-201ENST00000336798 ZNF549Q6P9A3 640 aa12.69□□□□□ -0.38
SDC3-201ENST00000336798 MOB2Q70IA6 237 aa12.69□□□□□ -0.38
SDC3-201ENST00000336798 ANKS1BQ7Z6G8 1248 aa12.69□□□□□ -0.38
SDC3-201ENST00000336798 SLC38A2Q96QD8 506 aa12.69□□□□□ -0.38
SDC3-201ENST00000336798 KIAA1683Q9H0B3 1180 aa12.69□□□□□ -0.38
SDC3-201ENST00000336798 ATG10Q9H0Y0 220 aa12.69□□□□□ -0.38
SDC3-201ENST00000336798 RIOX1Q9H6W3 641 aa12.69□□□□□ -0.38
SDC3-201ENST00000336798 CXCL14O95715 111 aa12.68□□□□□ -0.38
SDC3-201ENST00000336798 SLC35G4P0C7Q5 338 aa12.68□□□□□ -0.38
SDC3-201ENST00000336798 NPR3P17342 541 aa12.68□□□□□ -0.38
SDC3-201ENST00000336798 SLC12A3P55017 1021 aa12.68□□□□□ -0.38
SDC3-201ENST00000336798 ABATP80404 500 aa12.68□□□□□ -0.38
SDC3-201ENST00000336798 MRPS6P82932 125 aaKnown RBP12.68□□□□□ -0.38
SDC3-201ENST00000336798 DCTN2Q13561 401 aaKnown RBP12.68□□□□□ -0.38
SDC3-201ENST00000336798 PSRC1Q6PGN9 363 aaPredicted RBP12.68□□□□□ -0.38
SDC3-201ENST00000336798 FAM129CQ86XR2 697 aa12.68□□□□□ -0.38
SDC3-201ENST00000336798 TRPV3Q8NET8 790 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms