RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 HCRTO43612 131 aa13.55□□□□□ -0.24
CCDC88C-201ENST00000331194 MAN1A2O60476 641 aa13.55□□□□□ -0.24
CCDC88C-201ENST00000331194 NPM3O75607 178 aaKnown RBP13.55□□□□□ -0.24
CCDC88C-201ENST00000331194 DDHD2O94830 711 aa13.55□□□□□ -0.24
CCDC88C-201ENST00000331194 SLC35E2BP0CK96 405 aa13.55□□□□□ -0.24
CCDC88C-201ENST00000331194 HSPA1AP0DMV8 641 aaKnown RBP13.55□□□□□ -0.24
CCDC88C-201ENST00000331194 HSPA1BP0DMV9 641 aaKnown RBP13.55□□□□□ -0.24
CCDC88C-201ENST00000331194 NCK1P16333 377 aa13.55□□□□□ -0.24
CCDC88C-201ENST00000331194 KCNA5P22460 613 aa13.55□□□□□ -0.24
CCDC88C-201ENST00000331194 NMBRP28336 390 aa13.55□□□□□ -0.24
CCDC88C-201ENST00000331194 AP3M2P53677 418 aa13.55□□□□□ -0.24
CCDC88C-201ENST00000331194 AQP6Q13520 282 aa13.55□□□□□ -0.24
CCDC88C-201ENST00000331194 MAPK11Q15759 364 aa13.55□□□□□ -0.24
CCDC88C-201ENST00000331194 GOLGA7BQ2TAP0 167 aa13.55□□□□□ -0.24
CCDC88C-201ENST00000331194 PPP1R26Q5T8A7 1209 aaPredicted RBP13.55□□□□□ -0.24
CCDC88C-201ENST00000331194 PARP8Q8N3A8 854 aa13.55□□□□□ -0.24
CCDC88C-201ENST00000331194 RDM1Q8NG50 284 aa13.55□□□□□ -0.24
CCDC88C-201ENST00000331194 ZC3H15Q8WU90 426 aaKnown RBP13.55□□□□□ -0.24
CCDC88C-201ENST00000331194 HDAC10Q969S8 669 aa13.55□□□□□ -0.24
CCDC88C-201ENST00000331194 ISL2Q96A47 359 aa13.55□□□□□ -0.24
CCDC88C-201ENST00000331194 PPP1R16BQ96T49 567 aa13.55□□□□□ -0.24
CCDC88C-201ENST00000331194 MRIQ9BWK5 157 aa13.55□□□□□ -0.24
CCDC88C-201ENST00000331194 IL22Q9GZX6 179 aa13.55□□□□□ -0.24
CCDC88C-201ENST00000331194 UPF3AQ9H1J1 476 aaKnown RBP13.55□□□□□ -0.24
CCDC88C-201ENST00000331194 VTI1BQ9UEU0 232 aa13.55□□□□□ -0.24
CCDC88C-201ENST00000331194 VANGL2Q9ULK5 521 aa13.55□□□□□ -0.24
CCDC88C-201ENST00000331194 SLC22A2O15244 555 aa13.55□□□□□ -0.24
CCDC88C-201ENST00000331194 JRKO75564 520 aa13.55□□□□□ -0.24
CCDC88C-201ENST00000331194 SNRPB2P08579 225 aaKnown RBP13.55□□□□□ -0.24
CCDC88C-201ENST00000331194 ADSLP30566 484 aaPredicted RBP13.55□□□□□ -0.24
CCDC88C-201ENST00000331194 GNL1P36915 607 aaPredicted RBP13.55□□□□□ -0.24
CCDC88C-201ENST00000331194 TRAP1Q12931 704 aaKnown RBP13.55□□□□□ -0.24
CCDC88C-201ENST00000331194 INAVAQ3KP66 663 aa13.55□□□□□ -0.24
CCDC88C-201ENST00000331194 HSDL1Q3SXM5 330 aa13.55□□□□□ -0.24
CCDC88C-201ENST00000331194 SPANXN3Q5MJ09 141 aa13.55□□□□□ -0.24
CCDC88C-201ENST00000331194 OTUD3Q5T2D3 398 aaPredicted RBP13.55□□□□□ -0.24
CCDC88C-201ENST00000331194 CLEC6AQ6EIG7 209 aa13.55□□□□□ -0.24
CCDC88C-201ENST00000331194 DDIASQ8IXT1 998 aa13.55□□□□□ -0.24
CCDC88C-201ENST00000331194 OR13F1Q8NGS4 319 aa13.55□□□□□ -0.24
CCDC88C-201ENST00000331194 OSBPL10Q9BXB5 764 aa13.55□□□□□ -0.24
CCDC88C-201ENST00000331194 MRPL4Q9BYD3 311 aaKnown RBP13.55□□□□□ -0.24
CCDC88C-201ENST00000331194 PRDM12Q9H4Q4 367 aa13.55□□□□□ -0.24
CCDC88C-201ENST00000331194 PIF1Q9H611 641 aa13.55□□□□□ -0.24
CCDC88C-201ENST00000331194 EPS8L2Q9H6S3 715 aa13.55□□□□□ -0.24
CCDC88C-201ENST00000331194 RNF146Q9NTX7 359 aa13.55□□□□□ -0.24
CCDC88C-201ENST00000331194 CCM2LQ9NUG4 571 aaPredicted RBP13.55□□□□□ -0.24
CCDC88C-201ENST00000331194 SYNPO2Q9UMS6 1093 aa13.55□□□□□ -0.24
CCDC88C-201ENST00000331194 MAGED1Q9Y5V3 778 aaPredicted RBP13.55□□□□□ -0.24
CCDC88C-201ENST00000331194 NRXN2Q9P2S2 1712 aa13.55□□□□□ -0.24
CCDC88C-201ENST00000331194 NRP2O60462 931 aa13.55□□□□□ -0.24
CCDC88C-201ENST00000331194 GPC4O75487 556 aa13.55□□□□□ -0.24
CCDC88C-201ENST00000331194 CABYRO75952 493 aa13.55□□□□□ -0.24
CCDC88C-201ENST00000331194 SRP72O76094 671 aaKnown RBP13.55□□□□□ -0.24
CCDC88C-201ENST00000331194 MYO1DO94832 1006 aa13.55□□□□□ -0.24
CCDC88C-201ENST00000331194 PRKCBP05771 671 aa13.55□□□□□ -0.24
CCDC88C-201ENST00000331194 CYP2C9P11712 490 aa13.55□□□□□ -0.24
CCDC88C-201ENST00000331194 PSMD8P48556 350 aa13.55□□□□□ -0.24
CCDC88C-201ENST00000331194 CLCQ05315 142 aa13.55□□□□□ -0.24
CCDC88C-201ENST00000331194 FPGSQ05932 587 aa13.55□□□□□ -0.24
CCDC88C-201ENST00000331194 IFRD2Q12894 506 aaPredicted RBP13.55□□□□□ -0.24
CCDC88C-201ENST00000331194 CTBP1Q13363 440 aa13.55□□□□□ -0.24
CCDC88C-201ENST00000331194 C4orf22Q6V702 233 aa13.55□□□□□ -0.24
CCDC88C-201ENST00000331194 DHRSXQ8N5I4 330 aa13.55□□□□□ -0.24
CCDC88C-201ENST00000331194 CXorf38Q8TB03 319 aa13.55□□□□□ -0.24
CCDC88C-201ENST00000331194 ATG4CQ96DT6 458 aa13.55□□□□□ -0.24
CCDC88C-201ENST00000331194 MUS81Q96NY9 551 aa13.55□□□□□ -0.24
CCDC88C-201ENST00000331194 DGCR6LQ9BY27 220 aa13.55□□□□□ -0.24
CCDC88C-201ENST00000331194 AGPAT4Q9NRZ5 378 aa13.55□□□□□ -0.24
CCDC88C-201ENST00000331194 SLC30A1Q9Y6M5 507 aa13.55□□□□□ -0.24
CCDC88C-201ENST00000331194 TRIM64BA6NI03 449 aa13.54□□□□□ -0.24
CCDC88C-201ENST00000331194 MDM4O15151 490 aa13.54□□□□□ -0.24
CCDC88C-201ENST00000331194 YBX3P16989 372 aaKnown RBP eCLIP13.54□□□□□ -0.24
CCDC88C-201ENST00000331194 CES1P23141 567 aa13.54□□□□□ -0.24
CCDC88C-201ENST00000331194 GSSP48637 474 aa13.54□□□□□ -0.24
CCDC88C-201ENST00000331194 TPTEP56180 551 aa13.54□□□□□ -0.24
CCDC88C-201ENST00000331194 SAMD4BQ5PRF9 694 aaKnown RBP13.54□□□□□ -0.24
CCDC88C-201ENST00000331194 MFSD6LQ8IWD5 586 aa13.54□□□□□ -0.24
CCDC88C-201ENST00000331194 DENND6AQ8IWF6 608 aa13.54□□□□□ -0.24
CCDC88C-201ENST00000331194 STYXQ8WUJ0 223 aa13.54□□□□□ -0.24
CCDC88C-201ENST00000331194 GPRASP2Q96D09 838 aa13.54□□□□□ -0.24
CCDC88C-201ENST00000331194 SH3YL1Q96HL8 342 aaPredicted RBP13.54□□□□□ -0.24
CCDC88C-201ENST00000331194 NSMCE3Q96MG7 304 aa13.54□□□□□ -0.24
CCDC88C-201ENST00000331194 C1orf50Q9BV19 199 aa13.54□□□□□ -0.24
CCDC88C-201ENST00000331194 CCDC68Q9H2F9 335 aa13.54□□□□□ -0.24
CCDC88C-201ENST00000331194 POMKQ9H5K3 350 aa13.54□□□□□ -0.24
CCDC88C-201ENST00000331194 TRPV5Q9NQA5 729 aa13.54□□□□□ -0.24
CCDC88C-201ENST00000331194 WARS2Q9UGM6 360 aaKnown RBP13.54□□□□□ -0.24
CCDC88C-201ENST00000331194 ADAM28Q9UKQ2 775 aa13.54□□□□□ -0.24
CCDC88C-201ENST00000331194 PTGDR2Q9Y5Y4 395 aa13.54□□□□□ -0.24
CCDC88C-201ENST00000331194 TARM1B6A8C7 271 aa13.54□□□□□ -0.24
CCDC88C-201ENST00000331194 KPNA4O00629 521 aaPredicted RBP13.54□□□□□ -0.24
CCDC88C-201ENST00000331194 PGK1P00558 417 aa13.54□□□□□ -0.24
CCDC88C-201ENST00000331194 EEF1DP29692 281 aaKnown RBP13.54□□□□□ -0.24
CCDC88C-201ENST00000331194 APLP1P51693 650 aa13.54□□□□□ -0.24
CCDC88C-201ENST00000331194 NEK2P51955 445 aa13.54□□□□□ -0.24
CCDC88C-201ENST00000331194 PITX1P78337 314 aaPredicted RBP13.54□□□□□ -0.24
CCDC88C-201ENST00000331194 POU5F1BQ06416 359 aa13.54□□□□□ -0.24
CCDC88C-201ENST00000331194 NAB1Q13506 487 aa13.54□□□□□ -0.24
CCDC88C-201ENST00000331194 DPYSL2Q16555 572 aa13.54□□□□□ -0.24
CCDC88C-201ENST00000331194 SOWAHAQ2M3V2 549 aa13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms