RNA–Protein interactions for RNA: ENST00000329399.6

PDLIM1-201, Transcript of PDZ and LIM domain 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDLIM1, Length 1,452 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1-201ENST00000329399 CCDC110Q8TBZ0 833 aa16.66■□□□□ 0.26
PDLIM1-201ENST00000329399 PYROXD1Q8WU10 500 aa16.66■□□□□ 0.26
PDLIM1-201ENST00000329399 ATP6V1G3Q96LB4 118 aa16.66■□□□□ 0.26
PDLIM1-201ENST00000329399 NAT9Q9BTE0 207 aa16.66■□□□□ 0.26
PDLIM1-201ENST00000329399 C10orf88Q9H8K7 445 aa16.66■□□□□ 0.26
PDLIM1-201ENST00000329399 ETNK1Q9HBU6 452 aa16.66■□□□□ 0.26
PDLIM1-201ENST00000329399 NINJ2Q9NZG7 142 aa16.66■□□□□ 0.26
PDLIM1-201ENST00000329399 PLA2G4CQ9UP65 541 aa16.66■□□□□ 0.26
PDLIM1-201ENST00000329399 ERVW-1Q9UQF0 538 aa16.66■□□□□ 0.26
PDLIM1-201ENST00000329399 TBC1D30Q9Y2I9 924 aa16.66■□□□□ 0.26
PDLIM1-201ENST00000329399 CKAP5Q14008 2032 aa16.65■□□□□ 0.26
PDLIM1-201ENST00000329399 TYW5A2RUC4 315 aaKnown RBP16.65■□□□□ 0.26
PDLIM1-201ENST00000329399 MATN3O15232 486 aa16.65■□□□□ 0.26
PDLIM1-201ENST00000329399 ALDH1A2O94788 518 aa16.65■□□□□ 0.26
PDLIM1-201ENST00000329399 VAV1P15498 845 aa16.65■□□□□ 0.26
PDLIM1-201ENST00000329399 IFI35P80217 286 aaPredicted RBP16.65■□□□□ 0.26
PDLIM1-201ENST00000329399 WASHC5Q12768 1159 aa16.65■□□□□ 0.26
PDLIM1-201ENST00000329399 PDIA2Q13087 525 aaKnown RBP16.65■□□□□ 0.26
PDLIM1-201ENST00000329399 PRPSAP1Q14558 356 aa16.65■□□□□ 0.26
PDLIM1-201ENST00000329399 PARP15Q460N3 678 aa16.65■□□□□ 0.26
PDLIM1-201ENST00000329399 TMCO4Q5TGY1 634 aa16.65■□□□□ 0.26
PDLIM1-201ENST00000329399 RNF219Q5W0B1 726 aaPredicted RBP16.65■□□□□ 0.26
PDLIM1-201ENST00000329399 PID1Q7Z2X4 250 aa16.65■□□□□ 0.26
PDLIM1-201ENST00000329399 CACUL1Q86Y37 369 aa16.65■□□□□ 0.26
PDLIM1-201ENST00000329399 DEFB119Q8N690 84 aa16.65■□□□□ 0.26
PDLIM1-201ENST00000329399 PRSS16Q9NQE7 514 aa16.65■□□□□ 0.26
PDLIM1-201ENST00000329399 DOCK4Q8N1I0 1966 aa16.65■□□□□ 0.26
PDLIM1-201ENST00000329399 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP16.64■□□□□ 0.25
PDLIM1-201ENST00000329399 RASGRF2O14827 1237 aa16.64■□□□□ 0.25
PDLIM1-201ENST00000329399 SNAP91O60641 907 aa16.64■□□□□ 0.25
PDLIM1-201ENST00000329399 CLDN11O75508 207 aa16.64■□□□□ 0.25
PDLIM1-201ENST00000329399 MT-CO1P00395 513 aa16.64■□□□□ 0.25
PDLIM1-201ENST00000329399 ATP5BP06576 529 aaKnown RBP16.64■□□□□ 0.25
PDLIM1-201ENST00000329399 GLDCP23378 1020 aa16.64■□□□□ 0.25
PDLIM1-201ENST00000329399 PTPN3P26045 913 aa16.64■□□□□ 0.25
PDLIM1-201ENST00000329399 LMAN1P49257 510 aa16.64■□□□□ 0.25
PDLIM1-201ENST00000329399 PLK1P53350 603 aa16.64■□□□□ 0.25
PDLIM1-201ENST00000329399 CDH4P55283 916 aa16.64■□□□□ 0.25
PDLIM1-201ENST00000329399 ECT2LQ008S8 904 aa16.64■□□□□ 0.25
PDLIM1-201ENST00000329399 ZNF177Q13360 481 aaPredicted RBP16.64■□□□□ 0.25
PDLIM1-201ENST00000329399 CAMK2GQ13555 558 aaPredicted RBP16.64■□□□□ 0.25
PDLIM1-201ENST00000329399 KYNUQ16719 465 aa16.64■□□□□ 0.25
PDLIM1-201ENST00000329399 KRT71Q3SY84 523 aa16.64■□□□□ 0.25
PDLIM1-201ENST00000329399 USP39Q53GS9 565 aaKnown RBP16.64■□□□□ 0.25
PDLIM1-201ENST00000329399 TMPRSS6Q8IU80 811 aa16.64■□□□□ 0.25
PDLIM1-201ENST00000329399 NPWQ8N729 165 aa16.64■□□□□ 0.25
PDLIM1-201ENST00000329399 FAM76AQ8TAV0 307 aa16.64■□□□□ 0.25
PDLIM1-201ENST00000329399 ZC3H10Q96K80 434 aaKnown RBP16.64■□□□□ 0.25
PDLIM1-201ENST00000329399 SMOC1Q9H4F8 434 aa16.64■□□□□ 0.25
PDLIM1-201ENST00000329399 KLHL8Q9P2G9 620 aaPredicted RBP16.64■□□□□ 0.25
PDLIM1-201ENST00000329399 MFHAS1Q9Y4C4 1052 aa16.64■□□□□ 0.25
PDLIM1-201ENST00000329399 KNL1Q8NG31 2342 aa16.64■□□□□ 0.25
PDLIM1-201ENST00000329399 NPC1O15118 1278 aa16.63■□□□□ 0.25
PDLIM1-201ENST00000329399 AGTP01019 485 aa16.63■□□□□ 0.25
PDLIM1-201ENST00000329399 APRTP07741 180 aa16.63■□□□□ 0.25
PDLIM1-201ENST00000329399 ETFBP38117 255 aa16.63■□□□□ 0.25
PDLIM1-201ENST00000329399 RENBPP51606 427 aa16.63■□□□□ 0.25
PDLIM1-201ENST00000329399 GABPB1Q06547 395 aaPredicted RBP16.63■□□□□ 0.25
PDLIM1-201ENST00000329399 C9orf64Q5T6V5 341 aa16.63■□□□□ 0.25
PDLIM1-201ENST00000329399 CYS1Q717R9 158 aa16.63■□□□□ 0.25
PDLIM1-201ENST00000329399 TDRPQ86YL5 185 aa16.63■□□□□ 0.25
PDLIM1-201ENST00000329399 ARHGAP12Q8IWW6 846 aa16.63■□□□□ 0.25
PDLIM1-201ENST00000329399 PALM2Q8IXS6 379 aa16.63■□□□□ 0.25
PDLIM1-201ENST00000329399 ZBED8Q8IZ13 594 aa16.63■□□□□ 0.25
PDLIM1-201ENST00000329399 ZNF567Q8N184 647 aa16.63■□□□□ 0.25
PDLIM1-201ENST00000329399 OR7D4Q8NG98 312 aa16.63■□□□□ 0.25
PDLIM1-201ENST00000329399 NSMCE1Q8WV22 266 aa16.63■□□□□ 0.25
PDLIM1-201ENST00000329399 TEKT5Q96M29 485 aa16.63■□□□□ 0.25
PDLIM1-201ENST00000329399 IL12RB2Q99665 862 aa16.63■□□□□ 0.25
PDLIM1-201ENST00000329399 GBA3Q9H227 469 aa16.63■□□□□ 0.25
PDLIM1-201ENST00000329399 CYP8B1Q9UNU6 501 aa16.63■□□□□ 0.25
PDLIM1-201ENST00000329399 AAR2Q9Y312 384 aaKnown RBP16.63■□□□□ 0.25
PDLIM1-201ENST00000329399 ACTL7AQ9Y615 435 aa16.63■□□□□ 0.25
PDLIM1-201ENST00000329399 THADAQ6YHU6 1953 aa16.63■□□□□ 0.25
PDLIM1-201ENST00000329399 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa16.62■□□□□ 0.25
PDLIM1-201ENST00000329399 IGHV1OR15-9A0A0B4J2B8 117 aa16.62■□□□□ 0.25
PDLIM1-201ENST00000329399 K7ERQ8 282 aa16.62■□□□□ 0.25
PDLIM1-201ENST00000329399 SYNCRIPO60506 623 aaKnown RBP16.62■□□□□ 0.25
PDLIM1-201ENST00000329399 SIN3BO75182 1162 aa16.62■□□□□ 0.25
PDLIM1-201ENST00000329399 CDH16O75309 829 aa16.62■□□□□ 0.25
PDLIM1-201ENST00000329399 ANXA9O76027 345 aa16.62■□□□□ 0.25
PDLIM1-201ENST00000329399 TMEM63AO94886 807 aa16.62■□□□□ 0.25
PDLIM1-201ENST00000329399 SUN1O94901 812 aa16.62■□□□□ 0.25
PDLIM1-201ENST00000329399 MAP3K6O95382 1288 aa16.62■□□□□ 0.25
PDLIM1-201ENST00000329399 METTL18O95568 372 aa16.62■□□□□ 0.25
PDLIM1-201ENST00000329399 MAGEA3P43357 314 aa16.62■□□□□ 0.25
PDLIM1-201ENST00000329399 MMP13P45452 471 aa16.62■□□□□ 0.25
PDLIM1-201ENST00000329399 SPEM2Q0P670 501 aa16.62■□□□□ 0.25
PDLIM1-201ENST00000329399 HNRNPDQ14103 355 aaKnown RBP16.62■□□□□ 0.25
PDLIM1-201ENST00000329399 ANKRD22Q5VYY1 191 aa16.62■□□□□ 0.25
PDLIM1-201ENST00000329399 LAIR1Q6GTX8 287 aa16.62■□□□□ 0.25
PDLIM1-201ENST00000329399 LRRC8BQ6P9F7 803 aa16.62■□□□□ 0.25
PDLIM1-201ENST00000329399 KIAA1324Q6UXG2 1013 aaKnown RBP16.62■□□□□ 0.25
PDLIM1-201ENST00000329399 ZNF783Q6ZMS7 281 aa16.62■□□□□ 0.25
PDLIM1-201ENST00000329399 LINC00523Q86TU6 105 aa16.62■□□□□ 0.25
PDLIM1-201ENST00000329399 KLHDC8BQ8IXV7 354 aa16.62■□□□□ 0.25
PDLIM1-201ENST00000329399 TMEFF1Q8IYR6 380 aa16.62■□□□□ 0.25
PDLIM1-201ENST00000329399 MAML1Q92585 1016 aa16.62■□□□□ 0.25
PDLIM1-201ENST00000329399 VPS18Q9P253 973 aa16.62■□□□□ 0.25
PDLIM1-201ENST00000329399 SLC24A2Q9UI40 661 aa16.62■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms