RNA–Protein interactions for RNA: ENST00000315249.11

RFFL-201, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

APPRIS P1 TSL 2 BASIC

Gene RFFL, Length 7,293 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-201ENST00000315249 PARP9Q8IXQ6 854 aa13.58□□□□□ -0.24
RFFL-201ENST00000315249 EMID1Q96A84 441 aaPredicted RBP13.58□□□□□ -0.24
RFFL-201ENST00000315249 BTBD9Q96Q07 612 aa13.58□□□□□ -0.24
RFFL-201ENST00000315249 ARHGAP39Q9C0H5 1083 aa13.58□□□□□ -0.24
RFFL-201ENST00000315249 TCF7L2Q9NQB0 619 aa13.58□□□□□ -0.24
RFFL-201ENST00000315249 CLUHO75153 1309 aa13.58□□□□□ -0.24
RFFL-201ENST00000315249 H3BM21 787 aa13.58□□□□□ -0.24
RFFL-201ENST00000315249 TAS2R40P59535 323 aa13.58□□□□□ -0.24
RFFL-201ENST00000315249 OTOP3Q7RTS5 596 aa13.58□□□□□ -0.24
RFFL-201ENST00000315249 TMEM132CQ8N3T6 1108 aa13.58□□□□□ -0.24
RFFL-201ENST00000315249 LINGO1Q96FE5 620 aa13.58□□□□□ -0.24
RFFL-201ENST00000315249 TMEM120AQ9BXJ8 343 aa13.58□□□□□ -0.24
RFFL-201ENST00000315249 LHX5Q9H2C1 402 aa13.58□□□□□ -0.24
RFFL-201ENST00000315249 DMGDHQ9UI17 866 aaKnown RBP13.58□□□□□ -0.24
RFFL-201ENST00000315249 SPEF2Q9C093 1822 aa13.58□□□□□ -0.24
RFFL-201ENST00000315249 FGF1P05230 155 aa13.58□□□□□ -0.24
RFFL-201ENST00000315249 AP5B1Q2VPB7 878 aa13.58□□□□□ -0.24
RFFL-201ENST00000315249 USP39Q53GS9 565 aaKnown RBP13.58□□□□□ -0.24
RFFL-201ENST00000315249 DQX1Q8TE96 717 aaKnown RBP13.58□□□□□ -0.24
RFFL-201ENST00000315249 MORF4L1Q9UBU8 362 aa13.58□□□□□ -0.24
RFFL-201ENST00000315249 IGKV6D-41A0A0C4DH26 115 aa13.58□□□□□ -0.24
RFFL-201ENST00000315249 A0A1B0GVM2 712 aa13.58□□□□□ -0.24
RFFL-201ENST00000315249 TCAF2A6NFQ2 919 aa13.58□□□□□ -0.24
RFFL-201ENST00000315249 USP1O94782 785 aa13.58□□□□□ -0.24
RFFL-201ENST00000315249 FYNP06241 537 aa13.58□□□□□ -0.24
RFFL-201ENST00000315249 GATMP50440 423 aa13.58□□□□□ -0.24
RFFL-201ENST00000315249 BIKQ13323 160 aa13.58□□□□□ -0.24
RFFL-201ENST00000315249 FASTKQ14296 549 aaKnown RBP13.58□□□□□ -0.24
RFFL-201ENST00000315249 PPP1R15BQ5SWA1 713 aa13.58□□□□□ -0.24
RFFL-201ENST00000315249 AP2M1Q96CW1 435 aa13.58□□□□□ -0.24
RFFL-201ENST00000315249 UNCXA6NJT0 531 aa13.57□□□□□ -0.24
RFFL-201ENST00000315249 LTA4HP09960 611 aaKnown RBP13.57□□□□□ -0.24
RFFL-201ENST00000315249 PABPC1P11940 636 aaKnown RBP13.57□□□□□ -0.24
RFFL-201ENST00000315249 CSF2RAP15509 400 aa13.57□□□□□ -0.24
RFFL-201ENST00000315249 USP4Q13107 963 aa13.57□□□□□ -0.24
RFFL-201ENST00000315249 RASA2Q15283 850 aa13.57□□□□□ -0.24
RFFL-201ENST00000315249 GPAT3Q53EU6 434 aa13.57□□□□□ -0.24
RFFL-201ENST00000315249 RHOBTB2Q9BYZ6 727 aa13.57□□□□□ -0.24
RFFL-201ENST00000315249 KLHL20Q9Y2M5 609 aa13.57□□□□□ -0.24
RFFL-201ENST00000315249 LIASO43766 372 aa13.57□□□□□ -0.24
RFFL-201ENST00000315249 GMFGO60234 142 aa13.57□□□□□ -0.24
RFFL-201ENST00000315249 ERAL1O75616 437 aaKnown RBP13.57□□□□□ -0.24
RFFL-201ENST00000315249 COPZ1P61923 177 aa13.57□□□□□ -0.24
RFFL-201ENST00000315249 BMT2Q1RMZ1 405 aa13.57□□□□□ -0.24
RFFL-201ENST00000315249 AMZ1Q400G9 498 aa13.57□□□□□ -0.24
RFFL-201ENST00000315249 LMLNQ96KR4 655 aa13.57□□□□□ -0.24
RFFL-201ENST00000315249 KLHL32Q96NJ5 620 aa13.57□□□□□ -0.24
RFFL-201ENST00000315249 SEPHS2Q99611 448 aa13.57□□□□□ -0.24
RFFL-201ENST00000315249 TBCDQ9BTW9 1192 aa13.57□□□□□ -0.24
RFFL-201ENST00000315249 TTLL2Q9BWV7 592 aa13.57□□□□□ -0.24
RFFL-201ENST00000315249 ALKBH4Q9NXW9 302 aa13.57□□□□□ -0.24
RFFL-201ENST00000315249 MKL2Q9ULH7 1088 aa13.57□□□□□ -0.24
RFFL-201ENST00000315249 COLEC10Q9Y6Z7 277 aa13.57□□□□□ -0.24
RFFL-201ENST00000315249 EPHB6O15197 1021 aa13.57□□□□□ -0.24
RFFL-201ENST00000315249 FOXM1Q08050 763 aa13.57□□□□□ -0.24
RFFL-201ENST00000315249 PAGE2Q7Z2X7 111 aa13.57□□□□□ -0.24
RFFL-201ENST00000315249 CYB5D2Q8WUJ1 264 aa13.57□□□□□ -0.24
RFFL-201ENST00000315249 P2RY11Q96G91 374 aa13.57□□□□□ -0.24
RFFL-201ENST00000315249 FAIM2Q9BWQ8 316 aa13.57□□□□□ -0.24
RFFL-201ENST00000315249 NDUFAF1Q9Y375 327 aa13.57□□□□□ -0.24
RFFL-201ENST00000315249 BANF1O75531 89 aa13.57□□□□□ -0.24
RFFL-201ENST00000315249 AKT2P31751 481 aa13.57□□□□□ -0.24
RFFL-201ENST00000315249 COL9A3Q14050 684 aaPredicted RBP13.57□□□□□ -0.24
RFFL-201ENST00000315249 GRM2Q14416 872 aa13.57□□□□□ -0.24
RFFL-201ENST00000315249 SCIMPQ6UWF3 145 aa13.57□□□□□ -0.24
RFFL-201ENST00000315249 XYLT1Q86Y38 959 aa13.57□□□□□ -0.24
RFFL-201ENST00000315249 OR4K2Q8NGD2 314 aa13.57□□□□□ -0.24
RFFL-201ENST00000315249 PRRG4Q9BZD6 226 aa13.57□□□□□ -0.24
RFFL-201ENST00000315249 NINJ2Q9NZG7 142 aa13.57□□□□□ -0.24
RFFL-201ENST00000315249 HBS1LQ9Y450 684 aaKnown RBP13.57□□□□□ -0.24
RFFL-201ENST00000315249 MYO10Q9HD67 2058 aa13.57□□□□□ -0.24
RFFL-201ENST00000315249 INPPL1O15357 1258 aa13.57□□□□□ -0.24
RFFL-201ENST00000315249 PIAS1O75925 651 aa13.57□□□□□ -0.24
RFFL-201ENST00000315249 PRKG2Q13237 762 aa13.57□□□□□ -0.24
RFFL-201ENST00000315249 ZNF792Q3KQV3 632 aa13.57□□□□□ -0.24
RFFL-201ENST00000315249 HAO1Q9UJM8 370 aa13.57□□□□□ -0.24
RFFL-201ENST00000315249 ATRNL1Q5VV63 1379 aa13.57□□□□□ -0.24
RFFL-201ENST00000315249 GTPBP1O00178 669 aaKnown RBP13.56□□□□□ -0.24
RFFL-201ENST00000315249 AVILO75366 819 aa13.56□□□□□ -0.24
RFFL-201ENST00000315249 SLC10A3P09131 477 aa13.56□□□□□ -0.24
RFFL-201ENST00000315249 SEMG2Q02383 582 aa13.56□□□□□ -0.24
RFFL-201ENST00000315249 GNA12Q03113 381 aa13.56□□□□□ -0.24
RFFL-201ENST00000315249 SRSF11Q05519 484 aaKnown RBP13.56□□□□□ -0.24
RFFL-201ENST00000315249 FAM180AQ6UWF9 173 aa13.56□□□□□ -0.24
RFFL-201ENST00000315249 ADCK1Q86TW2 530 aa13.56□□□□□ -0.24
RFFL-201ENST00000315249 TMEM192Q8IY95 271 aa13.56□□□□□ -0.24
RFFL-201ENST00000315249 C4orf32Q8N8J7 132 aa13.56□□□□□ -0.24
RFFL-201ENST00000315249 HMCESQ96FZ2 354 aa13.56□□□□□ -0.24
RFFL-201ENST00000315249 OSBPL1AQ9BXW6 950 aa13.56□□□□□ -0.24
RFFL-201ENST00000315249 PCDH18Q9HCL0 1135 aa13.56□□□□□ -0.24
RFFL-201ENST00000315249 PSMD13Q9UNM6 376 aa13.56□□□□□ -0.24
RFFL-201ENST00000315249 ZNF780BQ9Y6R6 833 aa13.56□□□□□ -0.24
RFFL-201ENST00000315249 GLYATL1P3A0A0U1RQE8 302 aa13.56□□□□□ -0.24
RFFL-201ENST00000315249 ATG13O75143 517 aa13.56□□□□□ -0.24
RFFL-201ENST00000315249 HLA-DQA2P01906 255 aa13.56□□□□□ -0.24
RFFL-201ENST00000315249 HIST1H2ABP04908 130 aa13.56□□□□□ -0.24
RFFL-201ENST00000315249 UQCRBP14927 111 aa13.56□□□□□ -0.24
RFFL-201ENST00000315249 TFEBP19484 476 aa13.56□□□□□ -0.24
RFFL-201ENST00000315249 RPL22P35268 128 aaKnown RBP13.56□□□□□ -0.24
RFFL-201ENST00000315249 CRATP43155 626 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 141.5 ms