RNA–Protein interactions for RNA: ENST00000297405.9

CSMD3-201, Transcript of CUB and Sushi multiple domains 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSMD3, Length 13,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-201ENST00000297405 MRPL4Q9BYD3 311 aaKnown RBP4.87□□□□□ -1.63
CSMD3-201ENST00000297405 CEP41Q9BYV8 373 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 KCNN3Q9UGI6 736 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 NUFIP1Q9UHK0 495 aaKnown RBP4.87□□□□□ -1.63
CSMD3-201ENST00000297405 TESMINQ9Y4I5 508 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 MYO3AQ8NEV4 1616 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 PIGNO95427 931 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 PPP5CP53041 499 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 SLC10A7Q0GE19 358 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 NECTIN1Q15223 517 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 LLGL1Q15334 1064 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 KCTD19Q17RG1 926 aaPredicted RBP4.87□□□□□ -1.63
CSMD3-201ENST00000297405 LBHQ53QV2 105 aaPredicted RBP4.87□□□□□ -1.63
CSMD3-201ENST00000297405 GTF2IRD2BQ6EKJ0 949 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 CYP4V2Q6ZWL3 525 aaPredicted RBP4.87□□□□□ -1.63
CSMD3-201ENST00000297405 METTL3Q86U44 580 aaKnown RBP4.87□□□□□ -1.63
CSMD3-201ENST00000297405 GTF2IRD2Q86UP8 949 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 MTURNQ8N3F0 131 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 ZNF557Q8N988 423 aaPredicted RBP4.87□□□□□ -1.63
CSMD3-201ENST00000297405 ZNF570Q96NI8 536 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 SHCBP1LQ9BZQ2 653 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 C1orf21Q9H246 121 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 ABCD2Q9UBJ2 740 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 IGSF9BQ9UPX0 1349 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 F8W031 263 aaPredicted RBP4.87□□□□□ -1.63
CSMD3-201ENST00000297405 CHADO15335 359 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 PRH1P02810 166 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 IMPDH1P20839 514 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 TMEM270Q6UE05 265 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 FAM13CQ8NE31 585 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 CORO2AQ92828 525 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 GRHL1Q9NZI5 618 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 KCNJ14Q9UNX9 436 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 UNC13BO14795 1591 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 UGT1A9O60656 530 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 UGT1A6P19224 532 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 UGT1A1P22309 533 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 UGT1A4P22310 534 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 RPA1P27694 616 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 UGT1A3P35503 534 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 SLC16A1P53985 500 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 PKNOX1P55347 436 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 OR2B6P58173 313 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 MOB1BQ7L9L4 216 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 TTC7BQ86TV6 843 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 STOML3Q8TAV4 291 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 HEXIM2Q96MH2 286 aaKnown RBP4.87□□□□□ -1.63
CSMD3-201ENST00000297405 UGT1A7Q9HAW7 530 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 UGT1A10Q9HAW8 530 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 UGT1A8Q9HAW9 530 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 MAP10Q9P2G4 905 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 C5orf51A6NDU8 294 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 H7C1Q1 480 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 ZW10O43264 779 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 HS6ST1O60243 411 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 LTN1O94822 1766 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 GMPRP36959 345 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 ABL2P42684 1182 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 RAB27AP51159 221 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 EIF4A2Q14240 407 aaKnown RBP4.87□□□□□ -1.63
CSMD3-201ENST00000297405 FAM102AQ5T9C2 384 aaPredicted RBP4.87□□□□□ -1.63
CSMD3-201ENST00000297405 ZNF438Q7Z4V0 828 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 GLB1L3Q8NCI6 653 aaPredicted RBP4.87□□□□□ -1.63
CSMD3-201ENST00000297405 TRUB1Q8WWH5 349 aaKnown RBP4.87□□□□□ -1.63
CSMD3-201ENST00000297405 NR4A3Q92570 626 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 FAM193BQ96PV7 902 aaPredicted RBP4.87□□□□□ -1.63
CSMD3-201ENST00000297405 BTBD2Q9BX70 525 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 TJP2Q9UDY2 1190 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 PTPRJQ12913 1337 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 ATP6AP2A0A1C7CYW4 349 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 TRIM38O00635 465 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 ATP6AP2O75787 350 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 ALDH1A2O94788 518 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 RBP3P10745 1247 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 PTSQ03393 145 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 GCKRQ14397 625 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 RC3H1Q5TC82 1133 aaKnown RBP4.87□□□□□ -1.63
CSMD3-201ENST00000297405 GALNT12Q8IXK2 581 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 PGAM4Q8N0Y7 254 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 METTL13Q8N6R0 699 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 DGCR6LQ9BY27 220 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 DBR1Q9UK59 544 aaKnown RBP4.87□□□□□ -1.63
CSMD3-201ENST00000297405 NME7Q9Y5B8 376 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 SNX8Q9Y5X2 465 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 DPPA5A6NC42 116 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 PITPNM1O00562 1244 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 PPM1BO75688 479 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 GTF2F2P13984 249 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 OXCT1P55809 520 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 RPS7P62081 194 aaKnown RBP4.87□□□□□ -1.63
CSMD3-201ENST00000297405 GRIK3Q13003 919 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 AGKQ53H12 422 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 ARSHQ5FYA8 562 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 FAM160B2Q86V87 743 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 OR8K5Q8NH50 307 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 ZDHHC12Q96GR4 267 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 ZNF347Q96SE7 839 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 HGH1Q9BTY7 390 aa4.87□□□□□ -1.63
CSMD3-201ENST00000297405 KAT8Q9H7Z6 458 aaKnown RBP4.87□□□□□ -1.63
CSMD3-201ENST00000297405 PPP4R1LQ9P1A2 415 aa4.87□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms