RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 SLC38A2Q96QD8 506 aa19.27■□□□□ 0.67
UPF1-201ENST00000262803 BCL10O95999 233 aa19.27■□□□□ 0.67
UPF1-201ENST00000262803 OGNP20774 298 aaKnown RBP19.27■□□□□ 0.67
UPF1-201ENST00000262803 PRMT2P55345 433 aa19.27■□□□□ 0.67
UPF1-201ENST00000262803 C21orf59P57076 290 aa19.27■□□□□ 0.67
UPF1-201ENST00000262803 MYLPFQ96A32 169 aa19.27■□□□□ 0.67
UPF1-201ENST00000262803 MRPL57Q9BQC6 102 aaKnown RBP19.27■□□□□ 0.67
UPF1-201ENST00000262803 ARHGEF3Q9NR81 526 aa19.27■□□□□ 0.67
UPF1-201ENST00000262803 VPS4AQ9UN37 437 aa19.27■□□□□ 0.67
UPF1-201ENST00000262803 STON1Q9Y6Q2 735 aa19.27■□□□□ 0.67
UPF1-201ENST00000262803 IRGMA1A4Y4 181 aa19.26■□□□□ 0.67
UPF1-201ENST00000262803 H3BNH8 94 aa19.26■□□□□ 0.67
UPF1-201ENST00000262803 HSMCR30P0CW71 290 aa19.26■□□□□ 0.67
UPF1-201ENST00000262803 GSTM5P46439 218 aa19.26■□□□□ 0.67
UPF1-201ENST00000262803 BNIP2Q12982 314 aa19.26■□□□□ 0.67
UPF1-201ENST00000262803 IQCKQ8N0W5 287 aa19.26■□□□□ 0.67
UPF1-201ENST00000262803 PCDH20Q8N6Y1 951 aaKnown RBP19.26■□□□□ 0.67
UPF1-201ENST00000262803 ROBO3Q96MS0 1386 aa19.26■□□□□ 0.67
UPF1-201ENST00000262803 LINC00854A0A1B0GVQ3 168 aa19.26■□□□□ 0.67
UPF1-201ENST00000262803 SLC35G4P0C7Q5 338 aa19.26■□□□□ 0.67
UPF1-201ENST00000262803 CCNB1P14635 433 aa19.26■□□□□ 0.67
UPF1-201ENST00000262803 LPOP22079 712 aaPredicted RBP19.26■□□□□ 0.67
UPF1-201ENST00000262803 SLC25A3Q00325 362 aa19.26■□□□□ 0.67
UPF1-201ENST00000262803 RSBN1Q5VWQ0 802 aaPredicted RBP19.26■□□□□ 0.67
UPF1-201ENST00000262803 RAP1GAP2Q684P5 730 aa19.26■□□□□ 0.67
UPF1-201ENST00000262803 DENND6AQ8IWF6 608 aa19.26■□□□□ 0.67
UPF1-201ENST00000262803 RCOR3Q9P2K3 495 aaPredicted RBP19.26■□□□□ 0.67
UPF1-201ENST00000262803 GPN3Q9UHW5 284 aaPredicted RBP19.26■□□□□ 0.67
UPF1-201ENST00000262803 IGFBP4P22692 258 aa19.26■□□□□ 0.67
UPF1-201ENST00000262803 CLK2P49760 499 aaKnown RBP19.26■□□□□ 0.67
UPF1-201ENST00000262803 BEX3Q00994 111 aa19.26■□□□□ 0.67
UPF1-201ENST00000262803 POTEHQ6S545 545 aa19.26■□□□□ 0.67
UPF1-201ENST00000262803 PIWIL4Q7Z3Z4 852 aaKnown RBP19.26■□□□□ 0.67
UPF1-201ENST00000262803 OR8H2Q8N162 312 aa19.26■□□□□ 0.67
UPF1-201ENST00000262803 COPS5Q92905 334 aa19.26■□□□□ 0.67
UPF1-201ENST00000262803 PCDHAC2Q9Y5I4 1007 aa19.26■□□□□ 0.67
UPF1-201ENST00000262803 GRM6O15303 877 aa19.26■□□□□ 0.67
UPF1-201ENST00000262803 NBNO60934 754 aa19.26■□□□□ 0.67
UPF1-201ENST00000262803 GLUD1P00367 558 aa19.26■□□□□ 0.67
UPF1-201ENST00000262803 IFNA16P05015 189 aa19.26■□□□□ 0.67
UPF1-201ENST00000262803 TPGS1Q6ZTW0 290 aa19.26■□□□□ 0.67
UPF1-201ENST00000262803 MON1AQ86VX9 555 aa19.26■□□□□ 0.67
UPF1-201ENST00000262803 RBFAQ8N0V3 343 aa19.26■□□□□ 0.67
UPF1-201ENST00000262803 CACTIN-AS1Q8N1I8 211 aa19.26■□□□□ 0.67
UPF1-201ENST00000262803 PIK3R5Q8WYR1 880 aa19.26■□□□□ 0.67
UPF1-201ENST00000262803 MPP4Q96JB8 637 aa19.26■□□□□ 0.67
UPF1-201ENST00000262803 TTLL2Q9BWV7 592 aa19.26■□□□□ 0.67
UPF1-201ENST00000262803 HMG20AQ9NP66 347 aa19.26■□□□□ 0.67
UPF1-201ENST00000262803 SLCO1B3Q9NPD5 702 aa19.26■□□□□ 0.67
UPF1-201ENST00000262803 ZMYM5Q9UJ78 669 aa19.26■□□□□ 0.67
UPF1-201ENST00000262803 SLC9A8Q9Y2E8 581 aa19.26■□□□□ 0.67
UPF1-201ENST00000262803 CHURC1-FNTBB4DL54 471 aa19.25■□□□□ 0.67
UPF1-201ENST00000262803 KCTD19Q17RG1 926 aaPredicted RBP19.25■□□□□ 0.67
UPF1-201ENST00000262803 TTC23Q5W5X9 447 aa19.25■□□□□ 0.67
UPF1-201ENST00000262803 VSTM1Q6UX27 236 aa19.25■□□□□ 0.67
UPF1-201ENST00000262803 EIF3MQ7L2H7 374 aaKnown RBP19.25■□□□□ 0.67
UPF1-201ENST00000262803 PPTC7Q8NI37 304 aa19.25■□□□□ 0.67
UPF1-201ENST00000262803 CORO1BQ9BR76 489 aa19.25■□□□□ 0.67
UPF1-201ENST00000262803 PCDHGB3Q9Y5G1 929 aa19.25■□□□□ 0.67
UPF1-201ENST00000262803 A0A087WXM4 84 aa19.25■□□□□ 0.67
UPF1-201ENST00000262803 PSMD4P55036 377 aaKnown RBP19.25■□□□□ 0.67
UPF1-201ENST00000262803 LGALS3BPQ08380 585 aa19.25■□□□□ 0.67
UPF1-201ENST00000262803 DGKKQ5KSL6 1271 aa19.25■□□□□ 0.67
UPF1-201ENST00000262803 TEKT5Q96M29 485 aa19.25■□□□□ 0.67
UPF1-201ENST00000262803 EFCAB10A6NFE3 127 aa19.25■□□□□ 0.67
UPF1-201ENST00000262803 LRPAP1P30533 357 aa19.25■□□□□ 0.67
UPF1-201ENST00000262803 CD86P42081 329 aa19.25■□□□□ 0.67
UPF1-201ENST00000262803 C12orf56Q8IXR9 622 aa19.25■□□□□ 0.67
UPF1-201ENST00000262803 DCUN1D5Q9BTE7 237 aa19.25■□□□□ 0.67
UPF1-201ENST00000262803 SEMA6AQ9H2E6 1030 aa19.25■□□□□ 0.67
UPF1-201ENST00000262803 KLHL31Q9H511 634 aa19.25■□□□□ 0.67
UPF1-201ENST00000262803 MTF2Q9Y483 593 aaPredicted RBP19.25■□□□□ 0.67
UPF1-201ENST00000262803 BIRC5O15392 142 aa19.25■□□□□ 0.67
UPF1-201ENST00000262803 OR10H2O60403 315 aa19.25■□□□□ 0.67
UPF1-201ENST00000262803 DNTTP04053 509 aa19.25■□□□□ 0.67
UPF1-201ENST00000262803 ZC3H12AQ5D1E8 599 aaKnown RBP19.25■□□□□ 0.67
UPF1-201ENST00000262803 ARMC3Q5W041 872 aa19.25■□□□□ 0.67
UPF1-201ENST00000262803 CRELD2Q6UXH1 353 aaPredicted RBP19.25■□□□□ 0.67
UPF1-201ENST00000262803 BNIPLQ7Z465 357 aa19.25■□□□□ 0.67
UPF1-201ENST00000262803 CLVS1Q8IUQ0 354 aaPredicted RBP19.25■□□□□ 0.67
UPF1-201ENST00000262803 RNASE11Q8TAA1 199 aaKnown RBP19.25■□□□□ 0.67
UPF1-201ENST00000262803 NACC2Q96BF6 587 aa19.25■□□□□ 0.67
UPF1-201ENST00000262803 KLQ9UEF7 1012 aa19.25■□□□□ 0.67
UPF1-201ENST00000262803 CCR4P51679 360 aa19.24■□□□□ 0.67
UPF1-201ENST00000262803 NEDD8Q15843 81 aa19.24■□□□□ 0.67
UPF1-201ENST00000262803 PIGZQ86VD9 579 aa19.24■□□□□ 0.67
UPF1-201ENST00000262803 ZNF276Q8N554 614 aa19.24■□□□□ 0.67
UPF1-201ENST00000262803 BHLHE22Q8NFJ8 381 aaPredicted RBP19.24■□□□□ 0.67
UPF1-201ENST00000262803 PRDM12Q9H4Q4 367 aa19.24■□□□□ 0.67
UPF1-201ENST00000262803 VPS45Q9NRW7 570 aa19.24■□□□□ 0.67
UPF1-201ENST00000262803 DDX18Q9NVP1 670 aaKnown RBP19.24■□□□□ 0.67
UPF1-201ENST00000262803 COQ6Q9Y2Z9 468 aa19.24■□□□□ 0.67
UPF1-201ENST00000262803 TNK2Q07912 1038 aa19.24■□□□□ 0.67
UPF1-201ENST00000262803 ELP6Q0PNE2 266 aa19.24■□□□□ 0.67
UPF1-201ENST00000262803 PRDM4Q9UKN5 801 aa19.24■□□□□ 0.67
UPF1-201ENST00000262803 HES2Q9Y543 173 aa19.24■□□□□ 0.67
UPF1-201ENST00000262803 KCNE2Q9Y6J6 123 aa19.24■□□□□ 0.67
UPF1-201ENST00000262803 KPNA4O00629 521 aaPredicted RBP19.24■□□□□ 0.67
UPF1-201ENST00000262803 ITGADQ13349 1161 aa19.24■□□□□ 0.67
UPF1-201ENST00000262803 FGFBP2Q9BYJ0 223 aa19.24■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms