RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 AOC1P19801 751 aa13.03□□□□□ -0.32
SPTLC1-201ENST00000262554 PGGT1BP53609 377 aa13.03□□□□□ -0.32
SPTLC1-201ENST00000262554 ILF2Q12905 390 aaKnown RBP13.03□□□□□ -0.32
SPTLC1-201ENST00000262554 ZNF460Q14592 562 aa13.03□□□□□ -0.32
SPTLC1-201ENST00000262554 VEPH1Q14D04 833 aa13.03□□□□□ -0.32
SPTLC1-201ENST00000262554 E2F5Q15329 346 aa13.03□□□□□ -0.32
SPTLC1-201ENST00000262554 TRIM60Q495X7 471 aa13.03□□□□□ -0.32
SPTLC1-201ENST00000262554 SWT1Q5T5J6 900 aaKnown RBP13.03□□□□□ -0.32
SPTLC1-201ENST00000262554 CNSTQ6PJW8 725 aa13.03□□□□□ -0.32
SPTLC1-201ENST00000262554 MAVSQ7Z434 540 aa13.03□□□□□ -0.32
SPTLC1-201ENST00000262554 TMPRSS6Q8IU80 811 aa13.03□□□□□ -0.32
SPTLC1-201ENST00000262554 TMEM151AQ8N4L1 468 aa13.03□□□□□ -0.32
SPTLC1-201ENST00000262554 ZNF781Q8N8C0 355 aa13.03□□□□□ -0.32
SPTLC1-201ENST00000262554 OR6P1Q8NGX9 317 aa13.03□□□□□ -0.32
SPTLC1-201ENST00000262554 NXNL1Q96CM4 212 aa13.03□□□□□ -0.32
SPTLC1-201ENST00000262554 MYRFLQ96LU7 910 aa13.03□□□□□ -0.32
SPTLC1-201ENST00000262554 OMDQ99983 421 aa13.03□□□□□ -0.32
SPTLC1-201ENST00000262554 MMADHCQ9H3L0 296 aaPredicted RBP13.03□□□□□ -0.32
SPTLC1-201ENST00000262554 CYP4F11Q9HBI6 524 aa13.03□□□□□ -0.32
SPTLC1-201ENST00000262554 CAMSAP3Q9P1Y5 1249 aaPredicted RBP13.03□□□□□ -0.32
SPTLC1-201ENST00000262554 UBA2Q9UBT2 640 aaPredicted RBP13.03□□□□□ -0.32
SPTLC1-201ENST00000262554 SEPT3Q9UH03 358 aa13.03□□□□□ -0.32
SPTLC1-201ENST00000262554 PRR5-ARHGAP8B1AHC4 643 aa13.02□□□□□ -0.32
SPTLC1-201ENST00000262554 H3BNC9 293 aa13.02□□□□□ -0.32
SPTLC1-201ENST00000262554 ZNF195O14628 629 aa13.02□□□□□ -0.32
SPTLC1-201ENST00000262554 MUSKO15146 869 aa13.02□□□□□ -0.32
SPTLC1-201ENST00000262554 DIAPH2O60879 1101 aa13.02□□□□□ -0.32
SPTLC1-201ENST00000262554 STC2O76061 302 aa13.02□□□□□ -0.32
SPTLC1-201ENST00000262554 SBK3P0C264 359 aa13.02□□□□□ -0.32
SPTLC1-201ENST00000262554 HOXD9P28356 352 aaPredicted RBP13.02□□□□□ -0.32
SPTLC1-201ENST00000262554 CORO1AP31146 461 aaKnown RBP13.02□□□□□ -0.32
SPTLC1-201ENST00000262554 GRIA4P48058 902 aa13.02□□□□□ -0.32
SPTLC1-201ENST00000262554 HK2P52789 917 aa13.02□□□□□ -0.32
SPTLC1-201ENST00000262554 OXCT1P55809 520 aa13.02□□□□□ -0.32
SPTLC1-201ENST00000262554 RPS24P62847 133 aaKnown RBP13.02□□□□□ -0.32
SPTLC1-201ENST00000262554 ARHGAP8P85298 464 aa13.02□□□□□ -0.32
SPTLC1-201ENST00000262554 DSG1Q02413 1049 aa13.02□□□□□ -0.32
SPTLC1-201ENST00000262554 UBAP2LQ14157 1087 aaKnown RBP13.02□□□□□ -0.32
SPTLC1-201ENST00000262554 ALG1LQ6GMV1 187 aa13.02□□□□□ -0.32
SPTLC1-201ENST00000262554 PTAR1Q7Z6K3 402 aaPredicted RBP13.02□□□□□ -0.32
SPTLC1-201ENST00000262554 CILP2Q8IUL8 1156 aa13.02□□□□□ -0.32
SPTLC1-201ENST00000262554 TDRD5Q8NAT2 981 aaKnown RBP13.02□□□□□ -0.32
SPTLC1-201ENST00000262554 OR7D4Q8NG98 312 aa13.02□□□□□ -0.32
SPTLC1-201ENST00000262554 TTC8Q8TAM2 541 aa13.02□□□□□ -0.32
SPTLC1-201ENST00000262554 PEX13Q92968 403 aa13.02□□□□□ -0.32
SPTLC1-201ENST00000262554 HDAC10Q969S8 669 aa13.02□□□□□ -0.32
SPTLC1-201ENST00000262554 TMEM169Q96HH4 297 aa13.02□□□□□ -0.32
SPTLC1-201ENST00000262554 ZNF558Q96NG5 402 aa13.02□□□□□ -0.32
SPTLC1-201ENST00000262554 GPR78Q96P69 363 aa13.02□□□□□ -0.32
SPTLC1-201ENST00000262554 DDX50Q9BQ39 737 aaKnown RBP13.02□□□□□ -0.32
SPTLC1-201ENST00000262554 MRPL57Q9BQC6 102 aaKnown RBP13.02□□□□□ -0.32
SPTLC1-201ENST00000262554 MGME1Q9BQP7 344 aa13.02□□□□□ -0.32
SPTLC1-201ENST00000262554 SPON2Q9BUD6 331 aa13.02□□□□□ -0.32
SPTLC1-201ENST00000262554 CINPQ9BW66 212 aaPredicted RBP13.02□□□□□ -0.32
SPTLC1-201ENST00000262554 DRC3Q9H069 523 aa13.02□□□□□ -0.32
SPTLC1-201ENST00000262554 MRPL46Q9H2W6 279 aaKnown RBP13.02□□□□□ -0.32
SPTLC1-201ENST00000262554 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP13.02□□□□□ -0.32
SPTLC1-201ENST00000262554 XPR1Q9UBH6 696 aa13.02□□□□□ -0.32
SPTLC1-201ENST00000262554 RAP2CQ9Y3L5 183 aa13.02□□□□□ -0.32
SPTLC1-201ENST00000262554 YIPF1Q9Y548 306 aa13.02□□□□□ -0.32
SPTLC1-201ENST00000262554 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP13.02□□□□□ -0.33
SPTLC1-201ENST00000262554 TARM1B6A8C7 271 aa13.02□□□□□ -0.33
SPTLC1-201ENST00000262554 AURKAO14965 403 aa13.02□□□□□ -0.33
SPTLC1-201ENST00000262554 LDB2O43679 373 aa13.02□□□□□ -0.33
SPTLC1-201ENST00000262554 KDELR3O43731 214 aa13.02□□□□□ -0.33
SPTLC1-201ENST00000262554 RHOCP08134 193 aa13.02□□□□□ -0.33
SPTLC1-201ENST00000262554 CPA2P48052 419 aa13.02□□□□□ -0.33
SPTLC1-201ENST00000262554 PPP3CCP48454 512 aa13.02□□□□□ -0.33
SPTLC1-201ENST00000262554 KDSRQ06136 332 aa13.02□□□□□ -0.33
SPTLC1-201ENST00000262554 USP4Q13107 963 aa13.02□□□□□ -0.33
SPTLC1-201ENST00000262554 ZNF177Q13360 481 aaPredicted RBP13.02□□□□□ -0.33
SPTLC1-201ENST00000262554 PLD1Q13393 1074 aa13.02□□□□□ -0.33
SPTLC1-201ENST00000262554 RFTN1Q14699 578 aaPredicted RBP13.02□□□□□ -0.33
SPTLC1-201ENST00000262554 SLC14A2Q15849 920 aa13.02□□□□□ -0.33
SPTLC1-201ENST00000262554 FAM83EQ2M2I3 478 aa13.02□□□□□ -0.33
SPTLC1-201ENST00000262554 RBM20Q5T481 1227 aaKnown RBP13.02□□□□□ -0.33
SPTLC1-201ENST00000262554 ADGRF1Q5T601 910 aa13.02□□□□□ -0.33
SPTLC1-201ENST00000262554 CHST9Q7L1S5 443 aa13.02□□□□□ -0.33
SPTLC1-201ENST00000262554 BLOC1S5Q8TDH9 187 aa13.02□□□□□ -0.33
SPTLC1-201ENST00000262554 SCG3Q8WXD2 468 aaKnown RBP13.02□□□□□ -0.33
SPTLC1-201ENST00000262554 TRMT2BQ96GJ1 504 aaKnown RBP13.02□□□□□ -0.33
SPTLC1-201ENST00000262554 PRICKLE1Q96MT3 831 aaPredicted RBP13.02□□□□□ -0.33
SPTLC1-201ENST00000262554 DENND2DQ9H6A0 471 aaPredicted RBP13.02□□□□□ -0.33
SPTLC1-201ENST00000262554 COG4Q9H9E3 785 aa13.02□□□□□ -0.33
SPTLC1-201ENST00000262554 L3MBTL1Q9Y468 752 aa13.02□□□□□ -0.33
SPTLC1-201ENST00000262554 ANAPC1Q9H1A4 1944 aa13.01□□□□□ -0.33
SPTLC1-201ENST00000262554 ILVBLA1L0T0 632 aa13.01□□□□□ -0.33
SPTLC1-201ENST00000262554 PRRG1O14668 218 aa13.01□□□□□ -0.33
SPTLC1-201ENST00000262554 DLX3O60479 287 aa13.01□□□□□ -0.33
SPTLC1-201ENST00000262554 GJB3O75712 270 aa13.01□□□□□ -0.33
SPTLC1-201ENST00000262554 NDST3O95803 873 aa13.01□□□□□ -0.33
SPTLC1-201ENST00000262554 KLKB1P03952 638 aa13.01□□□□□ -0.33
SPTLC1-201ENST00000262554 PGM1P36871 562 aa13.01□□□□□ -0.33
SPTLC1-201ENST00000262554 NUMBP49757 651 aa13.01□□□□□ -0.33
SPTLC1-201ENST00000262554 NAGLUP54802 743 aa13.01□□□□□ -0.33
SPTLC1-201ENST00000262554 MXRA7P84157 204 aa13.01□□□□□ -0.33
SPTLC1-201ENST00000262554 DLG1Q12959 904 aa13.01□□□□□ -0.33
SPTLC1-201ENST00000262554 PREPLQ4J6C6 727 aaPredicted RBP13.01□□□□□ -0.33
SPTLC1-201ENST00000262554 DNAL1Q4LDG9 190 aa13.01□□□□□ -0.33
SPTLC1-201ENST00000262554 ZNF789Q5FWF6 425 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms