RNA–Protein interactions for RNA: ENST00000238688.9

SLIRP-201, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

APPRIS P3 TSL 2 BASIC

Gene SLIRP, Length 394 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-201ENST00000238688 ZKSCAN7Q9P0L1 754 aaPredicted RBP13.35□□□□□ -0.27
SLIRP-201ENST00000238688 UBA2Q9UBT2 640 aaPredicted RBP13.35□□□□□ -0.27
SLIRP-201ENST00000238688 FBXO4Q9UKT5 387 aa13.35□□□□□ -0.27
SLIRP-201ENST00000238688 NDRG2Q9UN36 371 aaKnown RBP13.35□□□□□ -0.27
SLIRP-201ENST00000238688 SDK1Q7Z5N4 2213 aa13.35□□□□□ -0.27
SLIRP-201ENST00000238688 DCHS1Q96JQ0 3298 aa13.35□□□□□ -0.27
SLIRP-201ENST00000238688 HEATR9A2RTY3 570 aa13.34□□□□□ -0.27
SLIRP-201ENST00000238688 FAM47DPA6NHR8 397 aa13.34□□□□□ -0.27
SLIRP-201ENST00000238688 SMIM23A6NLE4 172 aa13.34□□□□□ -0.27
SLIRP-201ENST00000238688 MAN2B1O00754 1011 aa13.34□□□□□ -0.27
SLIRP-201ENST00000238688 AVILO75366 819 aa13.34□□□□□ -0.27
SLIRP-201ENST00000238688 C1QAP02745 245 aa13.34□□□□□ -0.27
SLIRP-201ENST00000238688 FGF1P05230 155 aa13.34□□□□□ -0.27
SLIRP-201ENST00000238688 SERPINF2P08697 491 aa13.34□□□□□ -0.27
SLIRP-201ENST00000238688 BRAFP15056 766 aa13.34□□□□□ -0.27
SLIRP-201ENST00000238688 ADRA1DP25100 572 aa13.34□□□□□ -0.27
SLIRP-201ENST00000238688 MGAT1P26572 445 aa13.34□□□□□ -0.27
SLIRP-201ENST00000238688 HOXD9P28356 352 aaPredicted RBP13.34□□□□□ -0.27
SLIRP-201ENST00000238688 AVPR1AP37288 418 aa13.34□□□□□ -0.27
SLIRP-201ENST00000238688 PLK1P53350 603 aa13.34□□□□□ -0.27
SLIRP-201ENST00000238688 MTAPQ13126 283 aa13.34□□□□□ -0.27
SLIRP-201ENST00000238688 TMED2Q15363 201 aa13.34□□□□□ -0.27
SLIRP-201ENST00000238688 UGP2Q16851 508 aa13.34□□□□□ -0.27
SLIRP-201ENST00000238688 KCTD19Q17RG1 926 aaPredicted RBP13.34□□□□□ -0.27
SLIRP-201ENST00000238688 PDPK2PQ6A1A2 396 aa13.34□□□□□ -0.27
SLIRP-201ENST00000238688 TXNDC8Q6A555 127 aa13.34□□□□□ -0.27
SLIRP-201ENST00000238688 TSSK4Q6SA08 328 aa13.34□□□□□ -0.27
SLIRP-201ENST00000238688 KDELC1Q6UW63 502 aa13.34□□□□□ -0.27
SLIRP-201ENST00000238688 MAMSTRQ6ZN01 415 aa13.34□□□□□ -0.27
SLIRP-201ENST00000238688 TIFABQ6ZNK6 161 aa13.34□□□□□ -0.27
SLIRP-201ENST00000238688 ARHGAP36Q6ZRI8 547 aa13.34□□□□□ -0.27
SLIRP-201ENST00000238688 LCA5Q86VQ0 697 aa13.34□□□□□ -0.27
SLIRP-201ENST00000238688 CCDC33Q8N5R6 958 aa13.34□□□□□ -0.27
SLIRP-201ENST00000238688 ARL14EPQ8N8R7 260 aaPredicted RBP13.34□□□□□ -0.27
SLIRP-201ENST00000238688 SUMF1Q8NBK3 374 aa13.34□□□□□ -0.27
SLIRP-201ENST00000238688 SERBP1Q8NC51 408 aaKnown RBP eCLIP13.34□□□□□ -0.27
SLIRP-201ENST00000238688 PPHLN1Q8NEY8 458 aaKnown RBP13.34□□□□□ -0.27
SLIRP-201ENST00000238688 OR52K1Q8NGK4 314 aa13.34□□□□□ -0.27
SLIRP-201ENST00000238688 CHFRQ96EP1 664 aa13.34□□□□□ -0.27
SLIRP-201ENST00000238688 CFAP36Q96G28 342 aa13.34□□□□□ -0.27
SLIRP-201ENST00000238688 SRPK1Q96SB4 655 aaKnown RBP13.34□□□□□ -0.27
SLIRP-201ENST00000238688 CPNE1Q99829 537 aa13.34□□□□□ -0.27
SLIRP-201ENST00000238688 C2orf49Q9BVC5 232 aaPredicted RBP13.34□□□□□ -0.27
SLIRP-201ENST00000238688 EPN3Q9H201 632 aa13.34□□□□□ -0.27
SLIRP-201ENST00000238688 GTSE1Q9NYZ3 720 aa13.34□□□□□ -0.27
SLIRP-201ENST00000238688 CCL26Q9Y258 94 aa13.34□□□□□ -0.27
SLIRP-201ENST00000238688 MRPS17Q9Y2R5 130 aaKnown RBP13.34□□□□□ -0.27
SLIRP-201ENST00000238688 RPS6KL1Q9Y6S9 549 aa13.34□□□□□ -0.27
SLIRP-201ENST00000238688 SPAG17Q6Q759 2223 aa13.33□□□□□ -0.27
SLIRP-201ENST00000238688 EML5Q05BV3 1969 aa13.33□□□□□ -0.28
SLIRP-201ENST00000238688 LAMTOR5O43504 91 aa13.33□□□□□ -0.28
SLIRP-201ENST00000238688 LILRB5O75023 590 aa13.33□□□□□ -0.28
SLIRP-201ENST00000238688 BANF1O75531 89 aa13.33□□□□□ -0.28
SLIRP-201ENST00000238688 LSP1P33241 339 aa13.33□□□□□ -0.28
SLIRP-201ENST00000238688 IRAK1P51617 712 aa13.33□□□□□ -0.28
SLIRP-201ENST00000238688 CSE1LP55060 971 aaKnown RBP13.33□□□□□ -0.28
SLIRP-201ENST00000238688 WNT3AP56704 352 aa13.33□□□□□ -0.28
SLIRP-201ENST00000238688 SESN2P58004 480 aaPredicted RBP13.33□□□□□ -0.28
SLIRP-201ENST00000238688 RPS24P62847 133 aaKnown RBP13.33□□□□□ -0.28
SLIRP-201ENST00000238688 GNGT1P63211 74 aa13.33□□□□□ -0.28
SLIRP-201ENST00000238688 NIPAL4Q0D2K0 466 aa13.33□□□□□ -0.28
SLIRP-201ENST00000238688 CDH18Q13634 790 aa13.33□□□□□ -0.28
SLIRP-201ENST00000238688 DMC1Q14565 340 aa13.33□□□□□ -0.28
SLIRP-201ENST00000238688 DBN1Q16643 649 aa13.33□□□□□ -0.28
SLIRP-201ENST00000238688 FYB2Q5VWT5 728 aa13.33□□□□□ -0.28
SLIRP-201ENST00000238688 IL31Q6EBC2 164 aa13.33□□□□□ -0.28
SLIRP-201ENST00000238688 RETSATQ6NUM9 610 aa13.33□□□□□ -0.28
SLIRP-201ENST00000238688 PKN3Q6P5Z2 889 aa13.33□□□□□ -0.28
SLIRP-201ENST00000238688 RFWD3Q6PCD5 774 aa13.33□□□□□ -0.28
SLIRP-201ENST00000238688 GALNT7Q86SF2 657 aa13.33□□□□□ -0.28
SLIRP-201ENST00000238688 ZNF354CQ86Y25 554 aa13.33□□□□□ -0.28
SLIRP-201ENST00000238688 CMTM8Q8IZV2 173 aa13.33□□□□□ -0.28
SLIRP-201ENST00000238688 AGGF1Q8N302 714 aaeCLIP13.33□□□□□ -0.28
SLIRP-201ENST00000238688 ZBTB44Q8NCP5 570 aa13.33□□□□□ -0.28
SLIRP-201ENST00000238688 CALML6Q8TD86 181 aa13.33□□□□□ -0.28
SLIRP-201ENST00000238688 BPIFB1Q8TDL5 484 aa13.33□□□□□ -0.28
SLIRP-201ENST00000238688 CERS2Q96G23 380 aa13.33□□□□□ -0.28
SLIRP-201ENST00000238688 CABS1Q96KC9 395 aa13.33□□□□□ -0.28
SLIRP-201ENST00000238688 FAM83CQ9BQN1 747 aa13.33□□□□□ -0.28
SLIRP-201ENST00000238688 CINPQ9BW66 212 aaPredicted RBP13.33□□□□□ -0.28
SLIRP-201ENST00000238688 CEP41Q9BYV8 373 aa13.33□□□□□ -0.28
SLIRP-201ENST00000238688 TRABDQ9H4I3 376 aa13.33□□□□□ -0.28
SLIRP-201ENST00000238688 LMAN1LQ9HAT1 526 aa13.33□□□□□ -0.28
SLIRP-201ENST00000238688 NT5MQ9NPB1 228 aa13.33□□□□□ -0.28
SLIRP-201ENST00000238688 GKN1Q9NS71 199 aa13.33□□□□□ -0.28
SLIRP-201ENST00000238688 SYBUQ9NX95 663 aa13.33□□□□□ -0.28
SLIRP-201ENST00000238688 KIAA1522Q9P206 1035 aaPredicted RBP13.33□□□□□ -0.28
SLIRP-201ENST00000238688 ZFATQ9P243 1243 aa13.33□□□□□ -0.28
SLIRP-201ENST00000238688 TXNDC16Q9P2K2 825 aa13.33□□□□□ -0.28
SLIRP-201ENST00000238688 KIAA1549LQ6ZVL6 1849 aa13.33□□□□□ -0.28
SLIRP-201ENST00000238688 ANKRD36A6QL64 1941 aa13.33□□□□□ -0.28
SLIRP-201ENST00000238688 RALGAPA1Q6GYQ0 2036 aa13.32□□□□□ -0.28
SLIRP-201ENST00000238688 GOLGA6L7A0A1B0GV03 622 aa13.32□□□□□ -0.28
SLIRP-201ENST00000238688 LOC285095A0A1B0GVY8 99 aa13.32□□□□□ -0.28
SLIRP-201ENST00000238688 TMEM120BA0PK00 339 aa13.32□□□□□ -0.28
SLIRP-201ENST00000238688 OTOL1A6NHN0 477 aaPredicted RBP13.32□□□□□ -0.28
SLIRP-201ENST00000238688 H0Y626 953 aa13.32□□□□□ -0.28
SLIRP-201ENST00000238688 J3KR12 359 aa13.32□□□□□ -0.28
SLIRP-201ENST00000238688 SIN3BO75182 1162 aa13.32□□□□□ -0.28
SLIRP-201ENST00000238688 LMNAP02545 664 aaKnown RBP13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms