RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 LGMNQ99538 433 aa13.65□□□□□ -0.22
SF3A1-201ENST00000215793 TM6SF2Q9BZW4 377 aa13.65□□□□□ -0.22
SF3A1-201ENST00000215793 AKAP7Q9P0M2 348 aaPredicted RBP13.65□□□□□ -0.22
SF3A1-201ENST00000215793 TRAFD1O14545 582 aaPredicted RBP13.65□□□□□ -0.22
SF3A1-201ENST00000215793 IRF6O14896 467 aa13.65□□□□□ -0.22
SF3A1-201ENST00000215793 HYIQ5T013 277 aa13.65□□□□□ -0.22
SF3A1-201ENST00000215793 AGAP11Q8TF27 550 aa13.65□□□□□ -0.22
SF3A1-201ENST00000215793 LHX5Q9H2C1 402 aa13.65□□□□□ -0.22
SF3A1-201ENST00000215793 MRPL39Q9NYK5 338 aaKnown RBP13.65□□□□□ -0.22
SF3A1-201ENST00000215793 DERAQ9Y315 318 aa13.65□□□□□ -0.22
SF3A1-201ENST00000215793 STON1Q9Y6Q2 735 aa13.65□□□□□ -0.22
SF3A1-201ENST00000215793 TCRBV9S1A1TA0A576 114 aa13.65□□□□□ -0.23
SF3A1-201ENST00000215793 TGFB1I1O43294 461 aa13.65□□□□□ -0.23
SF3A1-201ENST00000215793 ZNF24P17028 368 aa13.65□□□□□ -0.23
SF3A1-201ENST00000215793 GPR1P46091 355 aa13.65□□□□□ -0.23
SF3A1-201ENST00000215793 RFX4Q33E94 735 aa13.65□□□□□ -0.23
SF3A1-201ENST00000215793 FOXR1Q6PIV2 292 aa13.65□□□□□ -0.23
SF3A1-201ENST00000215793 SPESP1Q6UW49 350 aa13.65□□□□□ -0.23
SF3A1-201ENST00000215793 GCNT7Q6ZNI0 430 aa13.65□□□□□ -0.23
SF3A1-201ENST00000215793 STRADAQ7RTN6 431 aa13.65□□□□□ -0.23
SF3A1-201ENST00000215793 PACS2Q86VP3 889 aa13.65□□□□□ -0.23
SF3A1-201ENST00000215793 CACUL1Q86Y37 369 aa13.65□□□□□ -0.23
SF3A1-201ENST00000215793 ARMC8Q8IUR7 673 aa13.65□□□□□ -0.23
SF3A1-201ENST00000215793 TSPAN14Q8NG11 270 aa13.65□□□□□ -0.23
SF3A1-201ENST00000215793 S100A13Q99584 98 aa13.65□□□□□ -0.23
SF3A1-201ENST00000215793 DUSP16Q9BY84 665 aa13.65□□□□□ -0.23
SF3A1-201ENST00000215793 KLHL31Q9H511 634 aa13.65□□□□□ -0.23
SF3A1-201ENST00000215793 ZNF624Q9P2J8 865 aaPredicted RBP13.65□□□□□ -0.23
SF3A1-201ENST00000215793 CRNNQ9UBG3 495 aaPredicted RBP13.65□□□□□ -0.23
SF3A1-201ENST00000215793 BTBD3Q9Y2F9 522 aa13.65□□□□□ -0.23
SF3A1-201ENST00000215793 GMPPBQ9Y5P6 360 aa13.65□□□□□ -0.23
SF3A1-201ENST00000215793 AVILO75366 819 aa13.64□□□□□ -0.23
SF3A1-201ENST00000215793 IDO1P14902 403 aa13.64□□□□□ -0.23
SF3A1-201ENST00000215793 NR1H2P55055 460 aa13.64□□□□□ -0.23
SF3A1-201ENST00000215793 NDUFA5Q16718 116 aa13.64□□□□□ -0.23
SF3A1-201ENST00000215793 USP41Q3LFD5 358 aa13.64□□□□□ -0.23
SF3A1-201ENST00000215793 NEK5Q6P3R8 708 aa13.64□□□□□ -0.23
SF3A1-201ENST00000215793 MZT2AQ6P582 158 aa13.64□□□□□ -0.23
SF3A1-201ENST00000215793 KLHL17Q6TDP4 642 aa13.64□□□□□ -0.23
SF3A1-201ENST00000215793 KRT74Q7RTS7 529 aa13.64□□□□□ -0.23
SF3A1-201ENST00000215793 R3HCC1LQ7Z5L2 792 aaKnown RBP13.64□□□□□ -0.23
SF3A1-201ENST00000215793 NDNQ99608 321 aa13.64□□□□□ -0.23
SF3A1-201ENST00000215793 NEK6Q9HC98 313 aa13.64□□□□□ -0.23
SF3A1-201ENST00000215793 SNX15Q9NRS6 342 aa13.64□□□□□ -0.23
SF3A1-201ENST00000215793 CLN6Q9NWW5 311 aa13.64□□□□□ -0.23
SF3A1-201ENST00000215793 ADGRB1O14514 1584 aa13.64□□□□□ -0.23
SF3A1-201ENST00000215793 URADA6NGE7 173 aa13.64□□□□□ -0.23
SF3A1-201ENST00000215793 MFN2O95140 757 aa13.64□□□□□ -0.23
SF3A1-201ENST00000215793 DRD4P21917 467 aa13.64□□□□□ -0.23
SF3A1-201ENST00000215793 FGFR3P22607 806 aa13.64□□□□□ -0.23
SF3A1-201ENST00000215793 PPIBP23284 216 aaKnown RBP13.64□□□□□ -0.23
SF3A1-201ENST00000215793 RPL38P63173 70 aaKnown RBP13.64□□□□□ -0.23
SF3A1-201ENST00000215793 TRABD2AQ86V40 505 aa13.64□□□□□ -0.23
SF3A1-201ENST00000215793 MON1AQ86VX9 555 aa13.64□□□□□ -0.23
SF3A1-201ENST00000215793 DENND1CQ8IV53 801 aa13.64□□□□□ -0.23
SF3A1-201ENST00000215793 MYDGFQ969H8 173 aa13.64□□□□□ -0.23
SF3A1-201ENST00000215793 TBC1D30Q9Y2I9 924 aa13.64□□□□□ -0.23
SF3A1-201ENST00000215793 TRIM17Q9Y577 477 aa13.64□□□□□ -0.23
SF3A1-201ENST00000215793 TMEM191CA6NGB0 347 aa13.64□□□□□ -0.23
SF3A1-201ENST00000215793 PTDSS1P48651 473 aaKnown RBP13.64□□□□□ -0.23
SF3A1-201ENST00000215793 NDUFAF6Q330K2 333 aa13.64□□□□□ -0.23
SF3A1-201ENST00000215793 PMF1Q6P1K2 205 aa13.64□□□□□ -0.23
SF3A1-201ENST00000215793 IZUMO1Q8IYV9 350 aa13.64□□□□□ -0.23
SF3A1-201ENST00000215793 NELL1Q92832 810 aa13.64□□□□□ -0.23
SF3A1-201ENST00000215793 SLC38A2Q96QD8 506 aa13.64□□□□□ -0.23
SF3A1-201ENST00000215793 VPS35Q96QK1 796 aa13.64□□□□□ -0.23
SF3A1-201ENST00000215793 COPS8Q99627 209 aa13.64□□□□□ -0.23
SF3A1-201ENST00000215793 RRAGCQ9HB90 399 aa13.64□□□□□ -0.23
SF3A1-201ENST00000215793 ZFP14Q9HCL3 533 aa13.64□□□□□ -0.23
SF3A1-201ENST00000215793 RNF19AQ9NV58 838 aa13.64□□□□□ -0.23
SF3A1-201ENST00000215793 VWA7Q9Y334 891 aa13.64□□□□□ -0.23
SF3A1-201ENST00000215793 LRRC14BA6NHZ5 514 aa13.64□□□□□ -0.23
SF3A1-201ENST00000215793 FFAR3O14843 346 aa13.64□□□□□ -0.23
SF3A1-201ENST00000215793 GPR42O15529 346 aa13.64□□□□□ -0.23
SF3A1-201ENST00000215793 HIST1H2ABP04908 130 aa13.64□□□□□ -0.23
SF3A1-201ENST00000215793 RAET1GQ6H3X3 334 aa13.64□□□□□ -0.23
SF3A1-201ENST00000215793 AAGABQ6PD74 315 aa13.64□□□□□ -0.23
SF3A1-201ENST00000215793 PACS1Q6VY07 963 aa13.64□□□□□ -0.23
SF3A1-201ENST00000215793 ARHGAP36Q6ZRI8 547 aa13.64□□□□□ -0.23
SF3A1-201ENST00000215793 HIST3H2AQ7L7L0 130 aa13.64□□□□□ -0.23
SF3A1-201ENST00000215793 BPIFB6Q8NFQ5 453 aa13.64□□□□□ -0.23
SF3A1-201ENST00000215793 PHF10Q8WUB8 498 aaKnown RBP13.64□□□□□ -0.23
SF3A1-201ENST00000215793 HIST1H2ACQ93077 130 aa13.64□□□□□ -0.23
SF3A1-201ENST00000215793 AGO1Q9UL18 857 aaKnown RBP13.64□□□□□ -0.23
SF3A1-201ENST00000215793 SLC9A8Q9Y2E8 581 aa13.64□□□□□ -0.23
SF3A1-201ENST00000215793 LYVE1Q9Y5Y7 322 aa13.64□□□□□ -0.23
SF3A1-201ENST00000215793 LOC100506127A0A0U1RQW1 187 aa13.63□□□□□ -0.23
SF3A1-201ENST00000215793 OR6C75A6NL08 312 aa13.63□□□□□ -0.23
SF3A1-201ENST00000215793 TBL1XO60907 577 aa13.63□□□□□ -0.23
SF3A1-201ENST00000215793 TAS2R40P59535 323 aa13.63□□□□□ -0.23
SF3A1-201ENST00000215793 MAP2K5Q13163 448 aa13.63□□□□□ -0.23
SF3A1-201ENST00000215793 IL17AQ16552 155 aa13.63□□□□□ -0.23
SF3A1-201ENST00000215793 SLC25A52Q3SY17 297 aa13.63□□□□□ -0.23
SF3A1-201ENST00000215793 NAIF1Q69YI7 327 aaPredicted RBP13.63□□□□□ -0.23
SF3A1-201ENST00000215793 SERPINA13PQ6UXR4 307 aa13.63□□□□□ -0.23
SF3A1-201ENST00000215793 FAM35AQ86V20 835 aa13.63□□□□□ -0.23
SF3A1-201ENST00000215793 RBFAQ8N0V3 343 aa13.63□□□□□ -0.23
SF3A1-201ENST00000215793 OR4L1Q8NH43 312 aa13.63□□□□□ -0.23
SF3A1-201ENST00000215793 COL26A1Q96A83 441 aa13.63□□□□□ -0.23
SF3A1-201ENST00000215793 MOXD2PA6NHM9 499 aa13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms