RNA–Protein interactions for RNA: ENST00000642137.1

LINC00339-213, long intergenic non-protein coding RNA 339, humanhuman

BASIC

Gene LINC00339, Length 222 nt, Biotype transcribed processed pseudogene, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-213ENST00000642137 SATB1Q01826 763 aa12.44□□□□□ -0.42
LINC00339-213ENST00000642137 DUPD1Q68J44 220 aa12.44□□□□□ -0.42
LINC00339-213ENST00000642137 KIAA1211LQ6NV74 962 aa12.44□□□□□ -0.42
LINC00339-213ENST00000642137 KDELC1Q6UW63 502 aa12.44□□□□□ -0.42
LINC00339-213ENST00000642137 TMPRSS6Q8IU80 811 aa12.44□□□□□ -0.42
LINC00339-213ENST00000642137 CAMK1DQ8IU85 385 aa12.44□□□□□ -0.42
LINC00339-213ENST00000642137 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP12.44□□□□□ -0.42
LINC00339-213ENST00000642137 BBOF1Q8ND07 529 aa12.44□□□□□ -0.42
LINC00339-213ENST00000642137 OR6K2Q8NGY2 324 aa12.44□□□□□ -0.42
LINC00339-213ENST00000642137 PIP4K2CQ8TBX8 421 aa12.44□□□□□ -0.42
LINC00339-213ENST00000642137 SPOCK2Q92563 424 aa12.44□□□□□ -0.42
LINC00339-213ENST00000642137 OXNAD1Q96HP4 312 aaPredicted RBP12.44□□□□□ -0.42
LINC00339-213ENST00000642137 MRGPRX2Q96LB1 330 aa12.44□□□□□ -0.42
LINC00339-213ENST00000642137 TRIM51Q9BSJ1 452 aa12.44□□□□□ -0.42
LINC00339-213ENST00000642137 MLPHQ9BV36 600 aaPredicted RBP12.44□□□□□ -0.42
LINC00339-213ENST00000642137 EIF2B3Q9NR50 452 aaKnown RBP12.44□□□□□ -0.42
LINC00339-213ENST00000642137 UBP1Q9NZI7 540 aa12.44□□□□□ -0.42
LINC00339-213ENST00000642137 TPX2Q9ULW0 747 aaKnown RBP12.44□□□□□ -0.42
LINC00339-213ENST00000642137 PCDHGC4Q9Y5F7 938 aa12.44□□□□□ -0.42
LINC00339-213ENST00000642137 RAI2Q9Y5P3 530 aa12.44□□□□□ -0.42
LINC00339-213ENST00000642137 TECTAO75443 2155 aa12.44□□□□□ -0.42
LINC00339-213ENST00000642137 E7EVH7 732 aa12.43□□□□□ -0.42
LINC00339-213ENST00000642137 TNFRSF10AO00220 468 aa12.43□□□□□ -0.42
LINC00339-213ENST00000642137 RIOK3O14730 519 aaKnown RBP12.43□□□□□ -0.42
LINC00339-213ENST00000642137 PMPCBO75439 489 aa12.43□□□□□ -0.42
LINC00339-213ENST00000642137 SUN1O94901 812 aa12.43□□□□□ -0.42
LINC00339-213ENST00000642137 AP2A1O95782 977 aa12.43□□□□□ -0.42
LINC00339-213ENST00000642137 PRLP01236 227 aa12.43□□□□□ -0.42
LINC00339-213ENST00000642137 IL1BP01584 269 aa12.43□□□□□ -0.42
LINC00339-213ENST00000642137 TPSB2P20231 275 aa12.43□□□□□ -0.42
LINC00339-213ENST00000642137 ADRA1AP35348 466 aa12.43□□□□□ -0.42
LINC00339-213ENST00000642137 LMAN1P49257 510 aa12.43□□□□□ -0.42
LINC00339-213ENST00000642137 WNT3AP56704 352 aa12.43□□□□□ -0.42
LINC00339-213ENST00000642137 RPL26P61254 145 aaKnown RBP12.43□□□□□ -0.42
LINC00339-213ENST00000642137 RPS14P62263 151 aaKnown RBP12.43□□□□□ -0.42
LINC00339-213ENST00000642137 POLR2LP62875 67 aaKnown RBP12.43□□□□□ -0.42
LINC00339-213ENST00000642137 BASP1P80723 227 aaKnown RBP12.43□□□□□ -0.42
LINC00339-213ENST00000642137 SLC7A5Q01650 507 aa12.43□□□□□ -0.42
LINC00339-213ENST00000642137 ZBTB16Q05516 673 aa12.43□□□□□ -0.42
LINC00339-213ENST00000642137 CDK18Q07002 472 aa12.43□□□□□ -0.42
LINC00339-213ENST00000642137 SFSWAPQ12872 951 aaKnown RBP12.43□□□□□ -0.42
LINC00339-213ENST00000642137 TRAF2Q12933 501 aa12.43□□□□□ -0.42
LINC00339-213ENST00000642137 TPSAB1Q15661 275 aa12.43□□□□□ -0.42
LINC00339-213ENST00000642137 ZNF805Q5CZA5 627 aa12.43□□□□□ -0.42
LINC00339-213ENST00000642137 ARMC12Q5T9G4 340 aa12.43□□□□□ -0.42
LINC00339-213ENST00000642137 FAXCQ5TGI0 409 aa12.43□□□□□ -0.42
LINC00339-213ENST00000642137 ZNF776Q68DI1 518 aaPredicted RBP12.43□□□□□ -0.42
LINC00339-213ENST00000642137 RANBP10Q6VN20 620 aa12.43□□□□□ -0.42
LINC00339-213ENST00000642137 LINC00523Q86TU6 105 aa12.43□□□□□ -0.42
LINC00339-213ENST00000642137 MMAAQ8IVH4 418 aaKnown RBP12.43□□□□□ -0.42
LINC00339-213ENST00000642137 CAMKK1Q8N5S9 505 aa12.43□□□□□ -0.42
LINC00339-213ENST00000642137 PDCD7Q8N8D1 485 aaKnown RBP12.43□□□□□ -0.42
LINC00339-213ENST00000642137 LRRN4CLQ8ND94 238 aa12.43□□□□□ -0.42
LINC00339-213ENST00000642137 SEC14L1Q92503 715 aa12.43□□□□□ -0.42
LINC00339-213ENST00000642137 CPT1BQ92523 772 aa12.43□□□□□ -0.42
LINC00339-213ENST00000642137 PBXIP1Q96AQ6 731 aa12.43□□□□□ -0.42
LINC00339-213ENST00000642137 ECHDC3Q96DC8 303 aa12.43□□□□□ -0.42
LINC00339-213ENST00000642137 FEM1CQ96JP0 617 aa12.43□□□□□ -0.42
LINC00339-213ENST00000642137 KLHL32Q96NJ5 620 aa12.43□□□□□ -0.42
LINC00339-213ENST00000642137 TDRD1Q9BXT4 1180 aaKnown RBP12.43□□□□□ -0.42
LINC00339-213ENST00000642137 LRRC40Q9H9A6 602 aa12.43□□□□□ -0.42
LINC00339-213ENST00000642137 WHRNQ9P202 907 aa12.43□□□□□ -0.42
LINC00339-213ENST00000642137 DKK3Q9UBP4 350 aa12.43□□□□□ -0.42
LINC00339-213ENST00000642137 DMGDHQ9UI17 866 aaKnown RBP12.43□□□□□ -0.42
LINC00339-213ENST00000642137 SARDHQ9UL12 918 aa12.43□□□□□ -0.42
LINC00339-213ENST00000642137 PHTF1Q9UMS5 762 aa12.43□□□□□ -0.42
LINC00339-213ENST00000642137 SCML1Q9UN30 329 aa12.43□□□□□ -0.42
LINC00339-213ENST00000642137 RPL26L1Q9UNX3 145 aaKnown RBP12.43□□□□□ -0.42
LINC00339-213ENST00000642137 SNX24Q9Y343 169 aa12.43□□□□□ -0.42
LINC00339-213ENST00000642137 PPIL1Q9Y3C6 166 aa12.43□□□□□ -0.42
LINC00339-213ENST00000642137 UNC80Q8N2C7 3258 aa12.42□□□□□ -0.42
LINC00339-213ENST00000642137 TSPAN11A1L157 253 aa12.42□□□□□ -0.42
LINC00339-213ENST00000642137 F5H423 210 aaPredicted RBP12.42□□□□□ -0.42
LINC00339-213ENST00000642137 ALDH1A2O94788 518 aa12.42□□□□□ -0.42
LINC00339-213ENST00000642137 HEXIM1O94992 359 aaKnown RBP12.42□□□□□ -0.42
LINC00339-213ENST00000642137 PGLSO95336 258 aa12.42□□□□□ -0.42
LINC00339-213ENST00000642137 PAPSS2O95340 614 aaPredicted RBP12.42□□□□□ -0.42
LINC00339-213ENST00000642137 PIGNO95427 931 aa12.42□□□□□ -0.42
LINC00339-213ENST00000642137 ADH1BP00325 375 aa12.42□□□□□ -0.42
LINC00339-213ENST00000642137 UGT2B4P06133 528 aa12.42□□□□□ -0.42
LINC00339-213ENST00000642137 C5AR1P21730 350 aa12.42□□□□□ -0.42
LINC00339-213ENST00000642137 SLC8A1P32418 973 aa12.42□□□□□ -0.42
LINC00339-213ENST00000642137 RPL21P46778 160 aaKnown RBP12.42□□□□□ -0.42
LINC00339-213ENST00000642137 CXCL12P48061 93 aa12.42□□□□□ -0.42
LINC00339-213ENST00000642137 SARNPP82979 210 aaKnown RBP12.42□□□□□ -0.42
LINC00339-213ENST00000642137 CCDC15Q0P6D6 951 aa12.42□□□□□ -0.42
LINC00339-213ENST00000642137 MTAPQ13126 283 aa12.42□□□□□ -0.42
LINC00339-213ENST00000642137 KCNJ11Q14654 390 aa12.42□□□□□ -0.42
LINC00339-213ENST00000642137 CST6Q15828 149 aa12.42□□□□□ -0.42
LINC00339-213ENST00000642137 KCTD19Q17RG1 926 aaPredicted RBP12.42□□□□□ -0.42
LINC00339-213ENST00000642137 RNASEH2BQ5TBB1 312 aaKnown RBP12.42□□□□□ -0.42
LINC00339-213ENST00000642137 IZUMO3Q5VZ72 239 aa12.42□□□□□ -0.42
LINC00339-213ENST00000642137 NAPEPLDQ6IQ20 393 aa12.42□□□□□ -0.42
LINC00339-213ENST00000642137 BRAT1Q6PJG6 821 aa12.42□□□□□ -0.42
LINC00339-213ENST00000642137 HOOK3Q86VS8 718 aa12.42□□□□□ -0.42
LINC00339-213ENST00000642137 PPIL6Q8IXY8 311 aa12.42□□□□□ -0.42
LINC00339-213ENST00000642137 NDUFAF2Q8N183 169 aa12.42□□□□□ -0.42
LINC00339-213ENST00000642137 TAB3Q8N5C8 712 aaPredicted RBP12.42□□□□□ -0.42
LINC00339-213ENST00000642137 NAT8LQ8N9F0 302 aa12.42□□□□□ -0.42
LINC00339-213ENST00000642137 MCUQ8NE86 351 aa12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms