RNA–Protein interactions for RNA: ENST00000637823.1

CLN6-223, Transcript of CLN6, transmembrane ER protein, human

TSL 5

Gene CLN6, Length 717 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN6-223	ENST00000637823	CRADD	P78560	199 aa		11.89	□□□□□ -0.51
CLN6-223	ENST00000637823	LAMB3	Q13751	1172 aa		11.89	□□□□□ -0.51
CLN6-223	ENST00000637823	CCDC85B	Q15834	202 aa	Predicted RBP	11.89	□□□□□ -0.51
CLN6-223	ENST00000637823	GEN1	Q17RS7	908 aa		11.89	□□□□□ -0.51
CLN6-223	ENST00000637823	ACCSL	Q4AC99	568 aa		11.89	□□□□□ -0.51
CLN6-223	ENST00000637823	SIRPB2	Q5JXA9	342 aa		11.89	□□□□□ -0.51
CLN6-223	ENST00000637823	DGKK	Q5KSL6	1271 aa		11.89	□□□□□ -0.51
CLN6-223	ENST00000637823	SPANXN3	Q5MJ09	141 aa		11.89	□□□□□ -0.51
CLN6-223	ENST00000637823	ATXN7L2	Q5T6C5	722 aa	Predicted RBP	11.89	□□□□□ -0.51
CLN6-223	ENST00000637823	TMEM215	Q68D42	235 aa		11.89	□□□□□ -0.51
CLN6-223	ENST00000637823	UNC5A	Q6ZN44	842 aa		11.89	□□□□□ -0.51
CLN6-223	ENST00000637823	CAPN12	Q6ZSI9	719 aa		11.89	□□□□□ -0.51
CLN6-223	ENST00000637823	C12orf40	Q86WS4	652 aa		11.89	□□□□□ -0.51
CLN6-223	ENST00000637823	SLC25A41	Q8N5S1	370 aa		11.89	□□□□□ -0.51
CLN6-223	ENST00000637823	FBF1	Q8TES7	1133 aa		11.89	□□□□□ -0.51
CLN6-223	ENST00000637823	PTCD2	Q8WV60	388 aa	Known RBP	11.89	□□□□□ -0.51
CLN6-223	ENST00000637823	EXOC2	Q96KP1	924 aa		11.89	□□□□□ -0.51
CLN6-223	ENST00000637823	NSMCE3	Q96MG7	304 aa		11.89	□□□□□ -0.51
CLN6-223	ENST00000637823	TRIB3	Q96RU7	358 aa		11.89	□□□□□ -0.51
CLN6-223	ENST00000637823	RANBP9	Q96S59	729 aa		11.89	□□□□□ -0.51
CLN6-223	ENST00000637823	RPP25	Q9BUL9	199 aa	Known RBP	11.89	□□□□□ -0.51
CLN6-223	ENST00000637823	KIFC1	Q9BW19	673 aa		11.89	□□□□□ -0.51
CLN6-223	ENST00000637823	ACSS3	Q9H6R3	686 aa		11.89	□□□□□ -0.51
CLN6-223	ENST00000637823	TMBIM4	Q9HC24	238 aa		11.89	□□□□□ -0.51
CLN6-223	ENST00000637823	MRM3	Q9HC36	420 aa	Known RBP	11.89	□□□□□ -0.51
CLN6-223	ENST00000637823	ELOVL2	Q9NXB9	296 aa		11.89	□□□□□ -0.51
CLN6-223	ENST00000637823	FETUB	Q9UGM5	382 aa		11.89	□□□□□ -0.51
CLN6-223	ENST00000637823	SLCO3A1	Q9UIG8	710 aa		11.89	□□□□□ -0.51
CLN6-223	ENST00000637823	SLC8A2	Q9UPR5	921 aa		11.89	□□□□□ -0.51
CLN6-223	ENST00000637823	FAM237B	A0A1B0GVD1	139 aa		11.88	□□□□□ -0.51
CLN6-223	ENST00000637823	PALM2-AKAP2	B1ALY0	433 aa	Predicted RBP	11.88	□□□□□ -0.51
CLN6-223	ENST00000637823	GOLGA8K	D6RF30	607 aa		11.88	□□□□□ -0.51
CLN6-223	ENST00000637823	ALDH1A2	O94788	518 aa		11.88	□□□□□ -0.51
CLN6-223	ENST00000637823	POP4	O95707	220 aa	Known RBP	11.88	□□□□□ -0.51
CLN6-223	ENST00000637823	SYF2	O95926	243 aa	Known RBP	11.88	□□□□□ -0.51
CLN6-223	ENST00000637823	DLD	P09622	509 aa	Known RBP	11.88	□□□□□ -0.51
CLN6-223	ENST00000637823	ATXN1L	P0C7T5	689 aa	Known RBP	11.88	□□□□□ -0.51
CLN6-223	ENST00000637823	ALAD	P13716	330 aa		11.88	□□□□□ -0.51
CLN6-223	ENST00000637823	GJA4	P35212	333 aa		11.88	□□□□□ -0.51
CLN6-223	ENST00000637823	RAD51	Q06609	339 aa		11.88	□□□□□ -0.51
CLN6-223	ENST00000637823	FRG1	Q14331	258 aa	Known RBP	11.88	□□□□□ -0.51
CLN6-223	ENST00000637823	GRM3	Q14832	879 aa		11.88	□□□□□ -0.51
CLN6-223	ENST00000637823	DLG2	Q15700	870 aa		11.88	□□□□□ -0.51
CLN6-223	ENST00000637823	KLHL38	Q2WGJ6	581 aa		11.88	□□□□□ -0.51
CLN6-223	ENST00000637823	MYLK3	Q32MK0	819 aa		11.88	□□□□□ -0.51
CLN6-223	ENST00000637823	KRT71	Q3SY84	523 aa		11.88	□□□□□ -0.51
CLN6-223	ENST00000637823	CARD16	Q5EG05	197 aa		11.88	□□□□□ -0.51
CLN6-223	ENST00000637823	C22orf39	Q6P5X5	142 aa		11.88	□□□□□ -0.51
CLN6-223	ENST00000637823	PKN3	Q6P5Z2	889 aa		11.88	□□□□□ -0.51
CLN6-223	ENST00000637823	ZNF449	Q6P9G9	518 aa		11.88	□□□□□ -0.51
CLN6-223	ENST00000637823	TMEM135	Q86UB9	458 aa		11.88	□□□□□ -0.51
CLN6-223	ENST00000637823	RNF135	Q8IUD6	432 aa		11.88	□□□□□ -0.51
CLN6-223	ENST00000637823	PLCD3	Q8N3E9	789 aa		11.88	□□□□□ -0.51
CLN6-223	ENST00000637823	KDM1B	Q8NB78	822 aa		11.88	□□□□□ -0.51
CLN6-223	ENST00000637823	PPHLN1	Q8NEY8	458 aa	Known RBP	11.88	□□□□□ -0.51
CLN6-223	ENST00000637823	OR2AP1	Q8NGE2	309 aa		11.88	□□□□□ -0.51
CLN6-223	ENST00000637823	GSDMB	Q8TAX9	411 aa		11.88	□□□□□ -0.51
CLN6-223	ENST00000637823	NXPE3	Q969Y0	559 aa		11.88	□□□□□ -0.51
CLN6-223	ENST00000637823	MRGPRX3	Q96LB0	322 aa		11.88	□□□□□ -0.51
CLN6-223	ENST00000637823	CYTH2	Q99418	400 aa		11.88	□□□□□ -0.51
CLN6-223	ENST00000637823	ADGRE3	Q9BY15	652 aa		11.88	□□□□□ -0.51
CLN6-223	ENST00000637823	CIPC	Q9C0C6	399 aa		11.88	□□□□□ -0.51
CLN6-223	ENST00000637823	BRD9	Q9H8M2	597 aa		11.88	□□□□□ -0.51
CLN6-223	ENST00000637823	PLAC1	Q9HBJ0	212 aa		11.88	□□□□□ -0.51
CLN6-223	ENST00000637823	GTSE1	Q9NYZ3	720 aa		11.88	□□□□□ -0.51
CLN6-223	ENST00000637823	MOCS1	Q9NZB8	636 aa		11.88	□□□□□ -0.51
CLN6-223	ENST00000637823	EVL	Q9UI08	416 aa	Predicted RBP	11.88	□□□□□ -0.51
CLN6-223	ENST00000637823	SLC24A2	Q9UI40	661 aa		11.88	□□□□□ -0.51
CLN6-223	ENST00000637823	CHKB	Q9Y259	395 aa		11.88	□□□□□ -0.51
CLN6-223	ENST00000637823	PCDHGC4	Q9Y5F7	938 aa		11.88	□□□□□ -0.51
CLN6-223	ENST00000637823	RAI2	Q9Y5P3	530 aa		11.88	□□□□□ -0.51
CLN6-223	ENST00000637823	NUMBL	Q9Y6R0	609 aa		11.88	□□□□□ -0.51
CLN6-223	ENST00000637823	FAM169A	Q9Y6X4	670 aa		11.88	□□□□□ -0.51
CLN6-223	ENST00000637823	COL4A3	Q01955	1670 aa		11.87	□□□□□ -0.51
CLN6-223	ENST00000637823	C5orf42	Q9H799	3197 aa		11.87	□□□□□ -0.51
CLN6-223	ENST00000637823	EXOC1L	A0A1B0GW35	172 aa		11.87	□□□□□ -0.51
CLN6-223	ENST00000637823	TCRBV9S1A1T	A0A576	114 aa		11.87	□□□□□ -0.51
CLN6-223	ENST00000637823	TLDC2	A0PJX2	215 aa		11.87	□□□□□ -0.51
CLN6-223	ENST00000637823	HEATR9	A2RTY3	570 aa		11.87	□□□□□ -0.51
CLN6-223	ENST00000637823	ARNTL	O00327	626 aa		11.87	□□□□□ -0.51
CLN6-223	ENST00000637823	USP1	O94782	785 aa		11.87	□□□□□ -0.51
CLN6-223	ENST00000637823	PRL	P01236	227 aa		11.87	□□□□□ -0.51
CLN6-223	ENST00000637823	PRKCH	P24723	683 aa		11.87	□□□□□ -0.51
CLN6-223	ENST00000637823	OPRD1	P41143	372 aa		11.87	□□□□□ -0.51
CLN6-223	ENST00000637823	CHRNA4	P43681	627 aa		11.87	□□□□□ -0.51
CLN6-223	ENST00000637823	RPL26	P61254	145 aa	Known RBP	11.87	□□□□□ -0.51
CLN6-223	ENST00000637823	ST8SIA6	P61647	398 aa		11.87	□□□□□ -0.51
CLN6-223	ENST00000637823	BCL2L1	Q07817	233 aa		11.87	□□□□□ -0.51
CLN6-223	ENST00000637823	TRAF2	Q12933	501 aa		11.87	□□□□□ -0.51
CLN6-223	ENST00000637823	MSLN	Q13421	630 aa	Predicted RBP	11.87	□□□□□ -0.51
CLN6-223	ENST00000637823	POU6F1	Q14863	301 aa		11.87	□□□□□ -0.51
CLN6-223	ENST00000637823	CRYM	Q14894	314 aa		11.87	□□□□□ -0.51
CLN6-223	ENST00000637823	EIF4H	Q15056	248 aa	Known RBP	11.87	□□□□□ -0.51
CLN6-223	ENST00000637823	SKIV2L	Q15477	1246 aa	Known RBP	11.87	□□□□□ -0.51
CLN6-223	ENST00000637823	LONRF1	Q17RB8	773 aa		11.87	□□□□□ -0.51
CLN6-223	ENST00000637823	ANKRD20A4	Q4UJ75	823 aa		11.87	□□□□□ -0.51
CLN6-223	ENST00000637823	AGBL2	Q5U5Z8	902 aa		11.87	□□□□□ -0.51
CLN6-223	ENST00000637823	NUDT18	Q6ZVK8	323 aa		11.87	□□□□□ -0.51
CLN6-223	ENST00000637823	NLRP9	Q7RTR0	991 aa		11.87	□□□□□ -0.51
CLN6-223	ENST00000637823	TDRP	Q86YL5	185 aa		11.87	□□□□□ -0.51

Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms