RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 OTUB2Q96DC9 234 aa17.03■□□□□ 0.32
CLN3-252ENST00000636907 AGAP2Q99490 1192 aa17.03■□□□□ 0.32
CLN3-252ENST00000636907 TREX1Q9NSU2 369 aa17.03■□□□□ 0.32
CLN3-252ENST00000636907 SLC2A6Q9UGQ3 507 aa17.03■□□□□ 0.32
CLN3-252ENST00000636907 PDE4DIPQ5VU43 2346 aa17.03■□□□□ 0.32
CLN3-252ENST00000636907 HEATR9A2RTY3 570 aa17.02■□□□□ 0.32
CLN3-252ENST00000636907 FAM47DPA6NHR8 397 aa17.02■□□□□ 0.32
CLN3-252ENST00000636907 GOLGA8RI6L899 631 aa17.02■□□□□ 0.32
CLN3-252ENST00000636907 LINC01565O15544 149 aa17.02■□□□□ 0.32
CLN3-252ENST00000636907 PRPF4O43172 522 aaKnown RBP eCLIP17.02■□□□□ 0.32
CLN3-252ENST00000636907 SMAD6O43541 496 aaKnown RBP17.02■□□□□ 0.32
CLN3-252ENST00000636907 NDST3O95803 873 aa17.02■□□□□ 0.32
CLN3-252ENST00000636907 TYRP14679 529 aa17.02■□□□□ 0.32
CLN3-252ENST00000636907 FSHRP23945 695 aa17.02■□□□□ 0.32
CLN3-252ENST00000636907 BMP8BP34820 402 aa17.02■□□□□ 0.32
CLN3-252ENST00000636907 NSUN2Q08J23 767 aaKnown RBP eCLIP17.02■□□□□ 0.32
CLN3-252ENST00000636907 HYAL1Q12794 435 aa17.02■□□□□ 0.32
CLN3-252ENST00000636907 SLC12A1Q13621 1099 aa17.02■□□□□ 0.32
CLN3-252ENST00000636907 PDPK2PQ6A1A2 396 aa17.02■□□□□ 0.32
CLN3-252ENST00000636907 NCEH1Q6PIU2 408 aa17.02■□□□□ 0.32
CLN3-252ENST00000636907 GPR149Q86SP6 731 aa17.02■□□□□ 0.32
CLN3-252ENST00000636907 ATP2A3Q93084 1043 aa17.02■□□□□ 0.32
CLN3-252ENST00000636907 TDRD1Q9BXT4 1180 aaKnown RBP17.02■□□□□ 0.32
CLN3-252ENST00000636907 IARS2Q9NSE4 1012 aaKnown RBP17.02■□□□□ 0.32
CLN3-252ENST00000636907 SMG5Q9UPR3 1016 aaKnown RBP17.02■□□□□ 0.32
CLN3-252ENST00000636907 CHKBQ9Y259 395 aa17.02■□□□□ 0.32
CLN3-252ENST00000636907 MYOFQ9NZM1 2061 aa17.02■□□□□ 0.31
CLN3-252ENST00000636907 GOLGA8TH3BQL2 631 aa17.01■□□□□ 0.31
CLN3-252ENST00000636907 SLC9A3R1O14745 358 aaPredicted RBP17.01■□□□□ 0.31
CLN3-252ENST00000636907 TYROBPO43914 113 aa17.01■□□□□ 0.31
CLN3-252ENST00000636907 VIPR2P41587 438 aa17.01■□□□□ 0.31
CLN3-252ENST00000636907 LRRC14Q15048 493 aa17.01■□□□□ 0.31
CLN3-252ENST00000636907 CNGA3Q16281 694 aa17.01■□□□□ 0.31
CLN3-252ENST00000636907 FUT11Q495W5 492 aa17.01■□□□□ 0.31
CLN3-252ENST00000636907 TCEAL5Q5H9L2 206 aa17.01■□□□□ 0.31
CLN3-252ENST00000636907 FAM78AQ5JUQ0 283 aa17.01■□□□□ 0.31
CLN3-252ENST00000636907 ATXN7L2Q5T6C5 722 aaPredicted RBP17.01■□□□□ 0.31
CLN3-252ENST00000636907 MROH9Q5TGP6 573 aa17.01■□□□□ 0.31
CLN3-252ENST00000636907 ARMC3Q5W041 872 aa17.01■□□□□ 0.31
CLN3-252ENST00000636907 TMEM184AQ6ZMB5 413 aa17.01■□□□□ 0.31
CLN3-252ENST00000636907 SH2D5Q6ZV89 423 aa17.01■□□□□ 0.31
CLN3-252ENST00000636907 MTBPQ96DY7 904 aa17.01■□□□□ 0.31
CLN3-252ENST00000636907 CPNE1Q99829 537 aa17.01■□□□□ 0.31
CLN3-252ENST00000636907 NSUN3Q9H649 340 aaKnown RBP17.01■□□□□ 0.31
CLN3-252ENST00000636907 MLXIPLQ9NP71 852 aa17.01■□□□□ 0.31
CLN3-252ENST00000636907 SSU72Q9NP77 194 aaKnown RBP17.01■□□□□ 0.31
CLN3-252ENST00000636907 MARK1Q9P0L2 795 aa17.01■□□□□ 0.31
CLN3-252ENST00000636907 RAI2Q9Y5P3 530 aa17.01■□□□□ 0.31
CLN3-252ENST00000636907 PRKCGP05129 697 aa17.01■□□□□ 0.31
CLN3-252ENST00000636907 F7P08709 466 aaPredicted RBP17.01■□□□□ 0.31
CLN3-252ENST00000636907 PYGBP11216 843 aa17.01■□□□□ 0.31
CLN3-252ENST00000636907 CNTFP26441 200 aa17.01■□□□□ 0.31
CLN3-252ENST00000636907 ARNTP27540 789 aa17.01■□□□□ 0.31
CLN3-252ENST00000636907 GBP2P32456 591 aaPredicted RBP17.01■□□□□ 0.31
CLN3-252ENST00000636907 GP5P40197 560 aa17.01■□□□□ 0.31
CLN3-252ENST00000636907 CTSOP43234 321 aaPredicted RBP17.01■□□□□ 0.31
CLN3-252ENST00000636907 ARCN1P48444 511 aaKnown RBP17.01■□□□□ 0.31
CLN3-252ENST00000636907 SLC18A2Q05940 514 aa17.01■□□□□ 0.31
CLN3-252ENST00000636907 TSTD2Q5T7W7 516 aa17.01■□□□□ 0.31
CLN3-252ENST00000636907 GET4Q7L5D6 327 aaPredicted RBP17.01■□□□□ 0.31
CLN3-252ENST00000636907 FGF13Q92913 245 aa17.01■□□□□ 0.31
CLN3-252ENST00000636907 ASB16Q96NS5 453 aa17.01■□□□□ 0.31
CLN3-252ENST00000636907 DUS2Q9NX74 493 aaKnown RBP17.01■□□□□ 0.31
CLN3-252ENST00000636907 NKIRAS1Q9NYS0 192 aa17.01■□□□□ 0.31
CLN3-252ENST00000636907 ARIH1Q9Y4X5 557 aaPredicted RBP17.01■□□□□ 0.31
CLN3-252ENST00000636907 PCDHGC4Q9Y5F7 938 aa17.01■□□□□ 0.31
CLN3-252ENST00000636907 RFPL1O75677 317 aa17■□□□□ 0.31
CLN3-252ENST00000636907 VAPBO95292 243 aa17■□□□□ 0.31
CLN3-252ENST00000636907 PRLP01236 227 aa17■□□□□ 0.31
CLN3-252ENST00000636907 PABPC1P11940 636 aaKnown RBP17■□□□□ 0.31
CLN3-252ENST00000636907 CA4P22748 312 aa17■□□□□ 0.31
CLN3-252ENST00000636907 RPA3P35244 121 aaPredicted RBP17■□□□□ 0.31
CLN3-252ENST00000636907 SLC18A1P54219 525 aa17■□□□□ 0.31
CLN3-252ENST00000636907 TRAF2Q12933 501 aa17■□□□□ 0.31
CLN3-252ENST00000636907 GRTP1Q5TC63 336 aa17■□□□□ 0.31
CLN3-252ENST00000636907 KIAA0930Q6ICG6 404 aaPredicted RBP17■□□□□ 0.31
CLN3-252ENST00000636907 ANKRD54Q6NXT1 300 aa17■□□□□ 0.31
CLN3-252ENST00000636907 SYCE2Q6PIF2 218 aa17■□□□□ 0.31
CLN3-252ENST00000636907 STRA8Q7Z7C7 330 aa17■□□□□ 0.31
CLN3-252ENST00000636907 SRLQ86TD4 932 aa17■□□□□ 0.31
CLN3-252ENST00000636907 EFHBQ8N7U6 833 aa17■□□□□ 0.31
CLN3-252ENST00000636907 BANPQ8N9N5 519 aa17■□□□□ 0.31
CLN3-252ENST00000636907 BLOC1S5Q8TDH9 187 aa17■□□□□ 0.31
CLN3-252ENST00000636907 DENND1AQ8TEH3 1009 aa17■□□□□ 0.31
CLN3-252ENST00000636907 OSCP1Q8WVF1 389 aa17■□□□□ 0.31
CLN3-252ENST00000636907 ALKBH8Q96BT7 664 aaKnown RBP17■□□□□ 0.31
CLN3-252ENST00000636907 TM6SF2Q9BZW4 377 aa17■□□□□ 0.31
CLN3-252ENST00000636907 TXNDC16Q9P2K2 825 aa17■□□□□ 0.31
CLN3-252ENST00000636907 GGA2Q9UJY4 613 aa17■□□□□ 0.31
CLN3-252ENST00000636907 MROH6A6NGR9 719 aa16.99■□□□□ 0.31
CLN3-252ENST00000636907 LDB2O43679 373 aa16.99■□□□□ 0.31
CLN3-252ENST00000636907 PAPSS2O95340 614 aaPredicted RBP16.99■□□□□ 0.31
CLN3-252ENST00000636907 PDHA1P08559 390 aa16.99■□□□□ 0.31
CLN3-252ENST00000636907 PIRTP0C851 137 aa16.99■□□□□ 0.31
CLN3-252ENST00000636907 ALADP13716 330 aa16.99■□□□□ 0.31
CLN3-252ENST00000636907 PAMP19021 973 aa16.99■□□□□ 0.31
CLN3-252ENST00000636907 STK19P49842 368 aaPredicted RBP16.99■□□□□ 0.31
CLN3-252ENST00000636907 SLC20A2Q08357 652 aa16.99■□□□□ 0.31
CLN3-252ENST00000636907 DHCR24Q15392 516 aa16.99■□□□□ 0.31
CLN3-252ENST00000636907 RALGPS1Q5JS13 557 aa16.99■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms