RNA–Protein interactions for RNA: ENST00000635861.1

CLN3-241, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,404 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-241ENST00000635861 DNAJC24Q6P3W2 148 aa18.66■□□□□ 0.58
CLN3-241ENST00000635861 PHLDB2Q86SQ0 1253 aa18.66■□□□□ 0.58
CLN3-241ENST00000635861 ZNF354CQ86Y25 554 aa18.66■□□□□ 0.58
CLN3-241ENST00000635861 UMODL1-AS1Q8N2C9 162 aa18.66■□□□□ 0.58
CLN3-241ENST00000635861 LSM14AQ8ND56 463 aaKnown RBP18.66■□□□□ 0.58
CLN3-241ENST00000635861 OR6K2Q8NGY2 324 aa18.66■□□□□ 0.58
CLN3-241ENST00000635861 TPCN2Q8NHX9 752 aa18.66■□□□□ 0.58
CLN3-241ENST00000635861 GLMNQ92990 594 aa18.66■□□□□ 0.58
CLN3-241ENST00000635861 CENPTQ96BT3 561 aa18.66■□□□□ 0.58
CLN3-241ENST00000635861 ABCG4Q9H172 646 aa18.66■□□□□ 0.58
CLN3-241ENST00000635861 PRORYQ9H606 182 aa18.66■□□□□ 0.58
CLN3-241ENST00000635861 SPASTQ9UBP0 616 aa18.66■□□□□ 0.58
CLN3-241ENST00000635861 U3KQA8 63 aa18.66■□□□□ 0.58
CLN3-241ENST00000635861 MGAQ8IWI9 3026 aa18.66■□□□□ 0.58
CLN3-241ENST00000635861 EIF3CLB5ME19 914 aaKnown RBP18.66■□□□□ 0.58
CLN3-241ENST00000635861 SPINT1O43278 529 aa18.66■□□□□ 0.58
CLN3-241ENST00000635861 CCP110O43303 1012 aa18.66■□□□□ 0.58
CLN3-241ENST00000635861 GJB6O95452 261 aa18.66■□□□□ 0.58
CLN3-241ENST00000635861 GKP32189 559 aa18.66■□□□□ 0.58
CLN3-241ENST00000635861 RHOAP61586 193 aa18.66■□□□□ 0.58
CLN3-241ENST00000635861 ELP6Q0PNE2 266 aa18.66■□□□□ 0.58
CLN3-241ENST00000635861 SASS6Q6UVJ0 657 aa18.66■□□□□ 0.58
CLN3-241ENST00000635861 TTC7BQ86TV6 843 aa18.66■□□□□ 0.58
CLN3-241ENST00000635861 WDR48Q8TAF3 677 aa18.66■□□□□ 0.58
CLN3-241ENST00000635861 IFI44Q8TCB0 444 aa18.66■□□□□ 0.58
CLN3-241ENST00000635861 CXorf40AQ8TE69 158 aa18.66■□□□□ 0.58
CLN3-241ENST00000635861 VCPIP1Q96JH7 1222 aa18.66■□□□□ 0.58
CLN3-241ENST00000635861 EIF3CQ99613 913 aaKnown RBP18.66■□□□□ 0.58
CLN3-241ENST00000635861 IL12RB2Q99665 862 aa18.66■□□□□ 0.58
CLN3-241ENST00000635861 AGPAT1Q99943 283 aa18.66■□□□□ 0.58
CLN3-241ENST00000635861 CNPY3Q9BT09 278 aa18.66■□□□□ 0.58
CLN3-241ENST00000635861 NOL6Q9H6R4 1146 aaKnown RBP18.66■□□□□ 0.58
CLN3-241ENST00000635861 FZD10Q9ULW2 581 aa18.66■□□□□ 0.58
CLN3-241ENST00000635861 EME2A4GXA9 379 aaPredicted RBP18.65■□□□□ 0.58
CLN3-241ENST00000635861 NEBLO76041 1014 aa18.65■□□□□ 0.58
CLN3-241ENST00000635861 FERP16591 822 aa18.65■□□□□ 0.58
CLN3-241ENST00000635861 ITPKBP27987 946 aa18.65■□□□□ 0.58
CLN3-241ENST00000635861 LSSP48449 732 aa18.65■□□□□ 0.58
CLN3-241ENST00000635861 RPIAP49247 311 aa18.65■□□□□ 0.58
CLN3-241ENST00000635861 ERVPABLB-1P60509 514 aa18.65■□□□□ 0.58
CLN3-241ENST00000635861 UBXN1Q04323 297 aa18.65■□□□□ 0.58
CLN3-241ENST00000635861 EIF2B5Q13144 721 aaKnown RBP18.65■□□□□ 0.58
CLN3-241ENST00000635861 SERINC3Q13530 473 aa18.65■□□□□ 0.58
CLN3-241ENST00000635861 STX1AQ16623 288 aa18.65■□□□□ 0.58
CLN3-241ENST00000635861 PPP1R15BQ5SWA1 713 aa18.65■□□□□ 0.58
CLN3-241ENST00000635861 ATXN7L2Q5T6C5 722 aaPredicted RBP18.65■□□□□ 0.58
CLN3-241ENST00000635861 IGF2-ASQ6U949 168 aa18.65■□□□□ 0.58
CLN3-241ENST00000635861 MACC1Q6ZN28 852 aa18.65■□□□□ 0.58
CLN3-241ENST00000635861 ZNF248Q8NDW4 579 aa18.65■□□□□ 0.58
CLN3-241ENST00000635861 MAPK15Q8TD08 544 aa18.65■□□□□ 0.58
CLN3-241ENST00000635861 BBC3Q96PG8 261 aaPredicted RBP18.65■□□□□ 0.58
CLN3-241ENST00000635861 MAGEB5Q9BZ81 275 aa18.65■□□□□ 0.58
CLN3-241ENST00000635861 SEPT11Q9NVA2 429 aaKnown RBP18.65■□□□□ 0.58
CLN3-241ENST00000635861 APOBEC3BQ9UH17 382 aaKnown RBP18.65■□□□□ 0.58
CLN3-241ENST00000635861 GGT7Q9UJ14 662 aa18.65■□□□□ 0.58
CLN3-241ENST00000635861 ITM2BQ9Y287 266 aa18.65■□□□□ 0.58
CLN3-241ENST00000635861 KIF26BQ2KJY2 2108 aa18.64■□□□□ 0.57
CLN3-241ENST00000635861 TMEM110-MUSTN1A8MSY1 372 aa18.64■□□□□ 0.57
CLN3-241ENST00000635861 RASA4BC9J798 803 aa18.64■□□□□ 0.57
CLN3-241ENST00000635861 RASA4O43374 803 aa18.64■□□□□ 0.57
CLN3-241ENST00000635861 PEX5P50542 639 aa18.64■□□□□ 0.57
CLN3-241ENST00000635861 BLKP51451 505 aa18.64■□□□□ 0.57
CLN3-241ENST00000635861 PCBP4P57723 403 aaKnown RBP18.64■□□□□ 0.57
CLN3-241ENST00000635861 SCYL2Q6P3W7 929 aa18.64■□□□□ 0.57
CLN3-241ENST00000635861 DNAAF5Q86Y56 855 aa18.64■□□□□ 0.57
CLN3-241ENST00000635861 PYROXD2Q8N2H3 581 aa18.64■□□□□ 0.57
CLN3-241ENST00000635861 SDR16C5Q8N3Y7 309 aa18.64■□□□□ 0.57
CLN3-241ENST00000635861 MCEEQ96PE7 176 aa18.64■□□□□ 0.57
CLN3-241ENST00000635861 BOCQ9BWV1 1114 aa18.64■□□□□ 0.57
CLN3-241ENST00000635861 POLR1BQ9H9Y6 1135 aa18.64■□□□□ 0.57
CLN3-241ENST00000635861 KLF15Q9UIH9 416 aa18.64■□□□□ 0.57
CLN3-241ENST00000635861 MYO6Q9UM54 1294 aa18.64■□□□□ 0.57
CLN3-241ENST00000635861 PCDHB1Q9Y5F3 818 aa18.64■□□□□ 0.57
CLN3-241ENST00000635861 ATMQ13315 3056 aa18.63■□□□□ 0.57
CLN3-241ENST00000635861 HELZ2Q9BYK8 2649 aaKnown RBP18.63■□□□□ 0.57
CLN3-241ENST00000635861 TEX51A0A1B0GUA7 166 aa18.63■□□□□ 0.57
CLN3-241ENST00000635861 TSPAN11A1L157 253 aa18.63■□□□□ 0.57
CLN3-241ENST00000635861 LMO7DNF2Z398 122 aa18.63■□□□□ 0.57
CLN3-241ENST00000635861 CREB3O43889 395 aa18.63■□□□□ 0.57
CLN3-241ENST00000635861 CSO75390 466 aaKnown RBP18.63■□□□□ 0.57
CLN3-241ENST00000635861 TCEA3O75764 348 aa18.63■□□□□ 0.57
CLN3-241ENST00000635861 CDK11BP21127 795 aaKnown RBP18.63■□□□□ 0.57
CLN3-241ENST00000635861 XPAP23025 273 aaPredicted RBP18.63■□□□□ 0.57
CLN3-241ENST00000635861 IGFALSP35858 605 aa18.63■□□□□ 0.57
CLN3-241ENST00000635861 NDST2P52849 883 aa18.63■□□□□ 0.57
CLN3-241ENST00000635861 NR0B2Q15466 257 aa18.63■□□□□ 0.57
CLN3-241ENST00000635861 TMEM52BQ4KMG9 183 aa18.63■□□□□ 0.57
CLN3-241ENST00000635861 ACAD10Q6JQN1 1059 aa18.63■□□□□ 0.57
CLN3-241ENST00000635861 DCUN1D2Q6PH85 259 aa18.63■□□□□ 0.57
CLN3-241ENST00000635861 LEKR1Q6ZMV7 388 aa18.63■□□□□ 0.57
CLN3-241ENST00000635861 PHACTR4Q8IZ21 702 aa18.63■□□□□ 0.57
CLN3-241ENST00000635861 TP53I13Q8NBR0 393 aaPredicted RBP18.63■□□□□ 0.57
CLN3-241ENST00000635861 LMX1AQ8TE12 382 aa18.63■□□□□ 0.57
CLN3-241ENST00000635861 NAT6Q93015 286 aa18.63■□□□□ 0.57
CLN3-241ENST00000635861 HMCESQ96FZ2 354 aa18.63■□□□□ 0.57
CLN3-241ENST00000635861 CRELD1Q96HD1 420 aa18.63■□□□□ 0.57
CLN3-241ENST00000635861 SLC13A1Q9BZW2 595 aa18.63■□□□□ 0.57
CLN3-241ENST00000635861 UBA2Q9UBT2 640 aaPredicted RBP18.63■□□□□ 0.57
CLN3-241ENST00000635861 USP12O75317 370 aa18.62■□□□□ 0.57
CLN3-241ENST00000635861 TIMP2P16035 220 aa18.62■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms