RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 GRK2P25098 689 aa10.73□□□□□ -0.69
CUX1-221ENST00000622516 SERPINH1P50454 418 aaKnown RBP10.73□□□□□ -0.69
CUX1-221ENST00000622516 CSHL1Q14406 222 aa10.73□□□□□ -0.69
CUX1-221ENST00000622516 TRIP4Q15650 581 aaPredicted RBP10.73□□□□□ -0.69
CUX1-221ENST00000622516 DENND1CQ8IV53 801 aa10.73□□□□□ -0.69
CUX1-221ENST00000622516 TDRD5Q8NAT2 981 aaKnown RBP10.73□□□□□ -0.69
CUX1-221ENST00000622516 PXYLP1Q8TE99 480 aa10.73□□□□□ -0.69
CUX1-221ENST00000622516 BHMTQ93088 406 aa10.73□□□□□ -0.69
CUX1-221ENST00000622516 OR52B2Q96RD2 323 aa10.73□□□□□ -0.69
CUX1-221ENST00000622516 TLE6Q9H808 572 aa10.73□□□□□ -0.69
CUX1-221ENST00000622516 CYP4F12Q9HCS2 524 aa10.73□□□□□ -0.69
CUX1-221ENST00000622516 OXSMQ9NWU1 459 aa10.73□□□□□ -0.69
CUX1-221ENST00000622516 ACOT9Q9Y305 439 aa10.73□□□□□ -0.69
CUX1-221ENST00000622516 ARL5AQ9Y689 179 aa10.73□□□□□ -0.69
CUX1-221ENST00000622516 COL4A4P53420 1690 aaPredicted RBP10.73□□□□□ -0.69
CUX1-221ENST00000622516 ANKRD12Q6UB98 2062 aa10.73□□□□□ -0.69
CUX1-221ENST00000622516 A0A0U1RQS6 177 aa10.72□□□□□ -0.69
CUX1-221ENST00000622516 OR6C75A6NL08 312 aa10.72□□□□□ -0.69
CUX1-221ENST00000622516 TMEM233B4DJY2 109 aa10.72□□□□□ -0.69
CUX1-221ENST00000622516 TSPAN3O60637 253 aa10.72□□□□□ -0.69
CUX1-221ENST00000622516 KRT36O76013 467 aa10.72□□□□□ -0.69
CUX1-221ENST00000622516 PRSS56P0CW18 603 aa10.72□□□□□ -0.69
CUX1-221ENST00000622516 PAX3P23760 479 aa10.72□□□□□ -0.69
CUX1-221ENST00000622516 EPHA3P29320 983 aa10.72□□□□□ -0.69
CUX1-221ENST00000622516 RAB10P61026 200 aa10.72□□□□□ -0.69
CUX1-221ENST00000622516 ARL13AQ5H913 290 aaPredicted RBP10.72□□□□□ -0.69
CUX1-221ENST00000622516 RALGPS1Q5JS13 557 aa10.72□□□□□ -0.69
CUX1-221ENST00000622516 SIRPB2Q5JXA9 342 aa10.72□□□□□ -0.69
CUX1-221ENST00000622516 SNX30Q5VWJ9 437 aa10.72□□□□□ -0.69
CUX1-221ENST00000622516 OR13J1Q8NGT2 312 aa10.72□□□□□ -0.69
CUX1-221ENST00000622516 HDAC10Q969S8 669 aa10.72□□□□□ -0.69
CUX1-221ENST00000622516 OLFM1Q99784 485 aa10.72□□□□□ -0.69
CUX1-221ENST00000622516 TSEN34Q9BSV6 310 aaKnown RBP10.72□□□□□ -0.69
CUX1-221ENST00000622516 RNPEPL1Q9HAU8 725 aa10.72□□□□□ -0.69
CUX1-221ENST00000622516 CYP4F11Q9HBI6 524 aa10.72□□□□□ -0.69
CUX1-221ENST00000622516 NOP53Q9NZM5 478 aaKnown RBP10.72□□□□□ -0.69
CUX1-221ENST00000622516 TAGLN3Q9UI15 199 aa10.72□□□□□ -0.69
CUX1-221ENST00000622516 FNDC3AQ9Y2H6 1198 aaKnown RBP10.72□□□□□ -0.69
CUX1-221ENST00000622516 TRIM17Q9Y577 477 aa10.72□□□□□ -0.69
CUX1-221ENST00000622516 SLC38A8A6NNN8 435 aa10.72□□□□□ -0.69
CUX1-221ENST00000622516 CSPG5O95196 566 aa10.72□□□□□ -0.69
CUX1-221ENST00000622516 PIGNO95427 931 aa10.72□□□□□ -0.69
CUX1-221ENST00000622516 ARSAP15289 507 aa10.72□□□□□ -0.69
CUX1-221ENST00000622516 MAGEA11P43364 429 aa10.72□□□□□ -0.69
CUX1-221ENST00000622516 HARS2P49590 506 aaKnown RBP10.72□□□□□ -0.69
CUX1-221ENST00000622516 SGSHP51688 502 aa10.72□□□□□ -0.69
CUX1-221ENST00000622516 NDST2P52849 883 aa10.72□□□□□ -0.69
CUX1-221ENST00000622516 SLC12A1Q13621 1099 aa10.72□□□□□ -0.69
CUX1-221ENST00000622516 PTPRRQ15256 657 aa10.72□□□□□ -0.69
CUX1-221ENST00000622516 RABGAP1LQ5R372 815 aa10.72□□□□□ -0.69
CUX1-221ENST00000622516 ARHGAP18Q8N392 663 aa10.72□□□□□ -0.69
CUX1-221ENST00000622516 ARRDC2Q8TBH0 407 aa10.72□□□□□ -0.69
CUX1-221ENST00000622516 HEXDCQ8WVB3 486 aa10.72□□□□□ -0.69
CUX1-221ENST00000622516 SEPT8Q92599 483 aa10.72□□□□□ -0.69
CUX1-221ENST00000622516 MARK4Q96L34 752 aa10.72□□□□□ -0.69
CUX1-221ENST00000622516 TSNARE1Q96NA8 513 aa10.72□□□□□ -0.69
CUX1-221ENST00000622516 FAM210AQ96ND0 272 aa10.72□□□□□ -0.69
CUX1-221ENST00000622516 NUF2Q9BZD4 464 aa10.72□□□□□ -0.69
CUX1-221ENST00000622516 CLIC5Q9NZA1 410 aa10.72□□□□□ -0.69
CUX1-221ENST00000622516 IL37Q9NZH6 218 aa10.72□□□□□ -0.69
CUX1-221ENST00000622516 MARCH4Q9P2E8 410 aaPredicted RBP10.72□□□□□ -0.69
CUX1-221ENST00000622516 ZNF212Q9UDV6 495 aa10.72□□□□□ -0.69
CUX1-221ENST00000622516 PACSIN3Q9UKS6 424 aa10.72□□□□□ -0.69
CUX1-221ENST00000622516 PCDHB12Q9Y5F1 795 aa10.72□□□□□ -0.69
CUX1-221ENST00000622516 ZFP37Q9Y6Q3 630 aaPredicted RBP10.72□□□□□ -0.69
CUX1-221ENST00000622516 KIAA0100Q14667 2235 aaKnown RBP10.72□□□□□ -0.69
CUX1-221ENST00000622516 FAM92AA1XBS5 289 aa10.71□□□□□ -0.69
CUX1-221ENST00000622516 SPECC1L-ADORA2AF8WAN1 911 aa10.71□□□□□ -0.69
CUX1-221ENST00000622516 DLX3O60479 287 aa10.71□□□□□ -0.69
CUX1-221ENST00000622516 RTN3O95197 1032 aaPredicted RBP10.71□□□□□ -0.69
CUX1-221ENST00000622516 TPBGLP0DKB5 382 aa10.71□□□□□ -0.69
CUX1-221ENST00000622516 HNRNPLP14866 589 aaKnown RBP eCLIP10.71□□□□□ -0.696e-8■■■■■ 28.9
CUX1-221ENST00000622516 TACR2P21452 398 aa10.71□□□□□ -0.69
CUX1-221ENST00000622516 CD151P48509 253 aa10.71□□□□□ -0.69
CUX1-221ENST00000622516 ALDH7A1P49419 539 aaKnown RBP10.71□□□□□ -0.69
CUX1-221ENST00000622516 CDK7P50613 346 aa10.71□□□□□ -0.69
CUX1-221ENST00000622516 SLC12A2P55011 1212 aa10.71□□□□□ -0.69
CUX1-221ENST00000622516 LBRQ14739 615 aaKnown RBP10.71□□□□□ -0.69
CUX1-221ENST00000622516 C11orf91Q3C1V1 193 aa10.71□□□□□ -0.69
CUX1-221ENST00000622516 C16orf59Q7L2K0 433 aa10.71□□□□□ -0.69
CUX1-221ENST00000622516 NPAS4Q8IUM7 802 aa10.71□□□□□ -0.69
CUX1-221ENST00000622516 KLHDC8BQ8IXV7 354 aa10.71□□□□□ -0.69
CUX1-221ENST00000622516 OR6Y1Q8NGX8 325 aa10.71□□□□□ -0.69
CUX1-221ENST00000622516 SPPL2BQ8TCT7 592 aa10.71□□□□□ -0.69
CUX1-221ENST00000622516 WBP2Q969T9 261 aa10.71□□□□□ -0.69
CUX1-221ENST00000622516 TBATAQ96M53 351 aa10.71□□□□□ -0.69
CUX1-221ENST00000622516 TUBB6Q9BUF5 446 aa10.71□□□□□ -0.69
CUX1-221ENST00000622516 EBF2Q9HAK2 575 aa10.71□□□□□ -0.69
CUX1-221ENST00000622516 SMPD4Q9NXE4 827 aa10.71□□□□□ -0.69
CUX1-221ENST00000622516 ZDHHC2Q9UIJ5 367 aa10.71□□□□□ -0.69
CUX1-221ENST00000622516 IGLV3-10A0A075B6K4 115 aa10.71□□□□□ -0.69
CUX1-221ENST00000622516 WASH4PA8MWX3 477 aa10.71□□□□□ -0.69
CUX1-221ENST00000622516 ZBTB14O43829 449 aa10.71□□□□□ -0.69
CUX1-221ENST00000622516 ZNF189O75820 626 aaPredicted RBP10.71□□□□□ -0.69
CUX1-221ENST00000622516 SEC24AO95486 1093 aa10.71□□□□□ -0.69
CUX1-221ENST00000622516 HTR7P34969 479 aa10.71□□□□□ -0.69
CUX1-221ENST00000622516 BFSP2Q13515 415 aa10.71□□□□□ -0.69
CUX1-221ENST00000622516 SERINC3Q13530 473 aa10.71□□□□□ -0.69
CUX1-221ENST00000622516 TMEM198Q66K66 360 aa10.71□□□□□ -0.69
CUX1-221ENST00000622516 KIAA1841Q6NSI8 718 aa10.71□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms