RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 CREB5Q02930 508 aa16.72■□□□□ 0.27
CCDC28A-202ENST00000611852 BCL2L1Q07817 233 aa16.72■□□□□ 0.27
CCDC28A-202ENST00000611852 ITKQ08881 620 aa16.72■□□□□ 0.27
CCDC28A-202ENST00000611852 XRCC4Q13426 336 aa16.72■□□□□ 0.27
CCDC28A-202ENST00000611852 TBC1D3GQ6DHY5 549 aa16.72■□□□□ 0.27
CCDC28A-202ENST00000611852 TBC1D3CQ6IPX1 549 aa16.72■□□□□ 0.27
CCDC28A-202ENST00000611852 CYP2U1Q7Z449 544 aa16.72■□□□□ 0.27
CCDC28A-202ENST00000611852 TBC1D3Q8IZP1 549 aaPredicted RBP16.72■□□□□ 0.27
CCDC28A-202ENST00000611852 CNTD1Q8N815 330 aa16.72■□□□□ 0.27
CCDC28A-202ENST00000611852 HCAR2Q8TDS4 363 aa16.72■□□□□ 0.27
CCDC28A-202ENST00000611852 SEMA3CQ99985 751 aa16.72■□□□□ 0.27
CCDC28A-202ENST00000611852 ARRDC1-AS1Q9H2J1 176 aa16.72■□□□□ 0.27
CCDC28A-202ENST00000611852 HAUS2Q9NVX0 235 aa16.72■□□□□ 0.27
CCDC28A-202ENST00000611852 ATP8A1Q9Y2Q0 1164 aa16.72■□□□□ 0.27
CCDC28A-202ENST00000611852 PCDHGA5Q9Y5G8 931 aa16.72■□□□□ 0.27
CCDC28A-202ENST00000611852 ANKRD36A6QL64 1941 aa16.72■□□□□ 0.27
CCDC28A-202ENST00000611852 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP16.71■□□□□ 0.27
CCDC28A-202ENST00000611852 TSPAN11A1L157 253 aa16.71■□□□□ 0.27
CCDC28A-202ENST00000611852 MEI4A8MW99 385 aa16.71■□□□□ 0.27
CCDC28A-202ENST00000611852 HACD1B0YJ81 288 aa16.71■□□□□ 0.27
CCDC28A-202ENST00000611852 TRAFD1O14545 582 aaPredicted RBP16.71■□□□□ 0.27
CCDC28A-202ENST00000611852 KCNK3O14649 394 aa16.71■□□□□ 0.27
CCDC28A-202ENST00000611852 GFRA3O60609 400 aa16.71■□□□□ 0.27
CCDC28A-202ENST00000611852 NEBLO76041 1014 aa16.71■□□□□ 0.27
CCDC28A-202ENST00000611852 IGHV4-34P06331 123 aa16.71■□□□□ 0.27
CCDC28A-202ENST00000611852 ABL2P42684 1182 aa16.71■□□□□ 0.27
CCDC28A-202ENST00000611852 FAM182AQ5T1J6 154 aa16.71■□□□□ 0.27
CCDC28A-202ENST00000611852 SYCP2LQ5T4T6 812 aa16.71■□□□□ 0.27
CCDC28A-202ENST00000611852 SEL1L2Q5TEA6 688 aa16.71■□□□□ 0.27
CCDC28A-202ENST00000611852 KIAA0895LQ68EN5 471 aa16.71■□□□□ 0.27
CCDC28A-202ENST00000611852 DNASE2BQ8WZ79 361 aa16.71■□□□□ 0.27
CCDC28A-202ENST00000611852 BIRC7Q96CA5 298 aa16.71■□□□□ 0.27
CCDC28A-202ENST00000611852 ECHDC3Q96DC8 303 aa16.71■□□□□ 0.27
CCDC28A-202ENST00000611852 QKIQ96PU8 341 aaKnown RBP eCLIP16.71■□□□□ 0.27
CCDC28A-202ENST00000611852 FAM118BQ9BPY3 351 aa16.71■□□□□ 0.27
CCDC28A-202ENST00000611852 CEP41Q9BYV8 373 aa16.71■□□□□ 0.27
CCDC28A-202ENST00000611852 PREBQ9HCU5 417 aa16.71■□□□□ 0.27
CCDC28A-202ENST00000611852 TMEM74BQ9NUR3 256 aa16.71■□□□□ 0.27
CCDC28A-202ENST00000611852 SEPT10Q9P0V9 454 aa16.71■□□□□ 0.27
CCDC28A-202ENST00000611852 PILRBQ9UKJ0 227 aa16.71■□□□□ 0.27
CCDC28A-202ENST00000611852 JRKLQ9Y4A0 524 aa16.71■□□□□ 0.27
CCDC28A-202ENST00000611852 TTLL3Q9Y4R7 772 aa16.71■□□□□ 0.27
CCDC28A-202ENST00000611852 FRYLO94915 3013 aa16.71■□□□□ 0.27
CCDC28A-202ENST00000611852 TCRBV7S2A1N4TA0A589 114 aa16.7■□□□□ 0.26
CCDC28A-202ENST00000611852 GOLGA6L9A6NEM1 432 aa16.7■□□□□ 0.26
CCDC28A-202ENST00000611852 FSBPO95073 299 aa16.7■□□□□ 0.26
CCDC28A-202ENST00000611852 TIMP2P16035 220 aa16.7■□□□□ 0.26
CCDC28A-202ENST00000611852 CES1P23141 567 aa16.7■□□□□ 0.26
CCDC28A-202ENST00000611852 PTPN3P26045 913 aa16.7■□□□□ 0.26
CCDC28A-202ENST00000611852 MAOBP27338 520 aa16.7■□□□□ 0.26
CCDC28A-202ENST00000611852 MPLP40238 635 aa16.7■□□□□ 0.26
CCDC28A-202ENST00000611852 PPP2CBP62714 309 aa16.7■□□□□ 0.26
CCDC28A-202ENST00000611852 PPP2CAP67775 309 aa16.7■□□□□ 0.26
CCDC28A-202ENST00000611852 DSC2Q02487 901 aa16.7■□□□□ 0.26
CCDC28A-202ENST00000611852 IHHQ14623 411 aa16.7■□□□□ 0.26
CCDC28A-202ENST00000611852 SLC45A4Q5BKX6 768 aa16.7■□□□□ 0.26
CCDC28A-202ENST00000611852 ZNF569Q5MCW4 686 aa16.7■□□□□ 0.26
CCDC28A-202ENST00000611852 WDR45BQ5MNZ6 344 aa16.7■□□□□ 0.26
CCDC28A-202ENST00000611852 PEAR1Q5VY43 1037 aaPredicted RBP16.7■□□□□ 0.26
CCDC28A-202ENST00000611852 BRAT1Q6PJG6 821 aa16.7■□□□□ 0.26
CCDC28A-202ENST00000611852 TTC7BQ86TV6 843 aa16.7■□□□□ 0.26
CCDC28A-202ENST00000611852 ZSWIM9Q86XI8 627 aa16.7■□□□□ 0.26
CCDC28A-202ENST00000611852 SYT12Q8IV01 421 aa16.7■□□□□ 0.26
CCDC28A-202ENST00000611852 DCLK2Q8N568 766 aa16.7■□□□□ 0.26
CCDC28A-202ENST00000611852 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP16.7■□□□□ 0.26
CCDC28A-202ENST00000611852 ARRDC2Q8TBH0 407 aa16.7■□□□□ 0.26
CCDC28A-202ENST00000611852 HTR3CQ8WXA8 447 aa16.7■□□□□ 0.26
CCDC28A-202ENST00000611852 PIGKQ92643 395 aa16.7■□□□□ 0.26
CCDC28A-202ENST00000611852 RAB7BQ96AH8 199 aa16.7■□□□□ 0.26
CCDC28A-202ENST00000611852 PCDHGC4Q9Y5F7 938 aa16.7■□□□□ 0.26
CCDC28A-202ENST00000611852 FADS3Q9Y5Q0 445 aa16.7■□□□□ 0.26
CCDC28A-202ENST00000611852 WDR87Q6ZQQ6 2873 aa16.7■□□□□ 0.26
CCDC28A-202ENST00000611852 ATXN2Q99700 1313 aaKnown RBP16.7■□□□□ 0.26
CCDC28A-202ENST00000611852 FAM186AA6NE01 2351 aa16.7■□□□□ 0.26
CCDC28A-202ENST00000611852 H7C0C1 242 aa16.7■□□□□ 0.26
CCDC28A-202ENST00000611852 ENC1O14682 589 aa16.7■□□□□ 0.26
CCDC28A-202ENST00000611852 AREL1O15033 823 aa16.7■□□□□ 0.26
CCDC28A-202ENST00000611852 SPINT1O43278 529 aa16.7■□□□□ 0.26
CCDC28A-202ENST00000611852 MTSS1O43312 755 aa16.7■□□□□ 0.26
CCDC28A-202ENST00000611852 HTRA2O43464 458 aaPredicted RBP16.7■□□□□ 0.26
CCDC28A-202ENST00000611852 AP1G1O43747 822 aa16.7■□□□□ 0.26
CCDC28A-202ENST00000611852 KIF5CO60282 957 aa16.7■□□□□ 0.26
CCDC28A-202ENST00000611852 SOCS5O75159 536 aa16.7■□□□□ 0.26
CCDC28A-202ENST00000611852 ATP5OP48047 213 aa16.7■□□□□ 0.26
CCDC28A-202ENST00000611852 CCR5P51681 352 aa16.7■□□□□ 0.26
CCDC28A-202ENST00000611852 EIF3EP60228 445 aaKnown RBP16.7■□□□□ 0.26
CCDC28A-202ENST00000611852 NIPAL4Q0D2K0 466 aa16.7■□□□□ 0.26
CCDC28A-202ENST00000611852 WASHC5Q12768 1159 aa16.7■□□□□ 0.26
CCDC28A-202ENST00000611852 UGP2Q16851 508 aa16.7■□□□□ 0.26
CCDC28A-202ENST00000611852 TEX44Q53QW1 395 aa16.7■□□□□ 0.26
CCDC28A-202ENST00000611852 LRRC73Q5JTD7 316 aa16.7■□□□□ 0.26
CCDC28A-202ENST00000611852 PLA2G2CQ5R387 149 aa16.7■□□□□ 0.26
CCDC28A-202ENST00000611852 CFAP58Q5T655 872 aa16.7■□□□□ 0.26
CCDC28A-202ENST00000611852 NEK5Q6P3R8 708 aa16.7■□□□□ 0.26
CCDC28A-202ENST00000611852 SLC13A5Q86YT5 568 aaPredicted RBP16.7■□□□□ 0.26
CCDC28A-202ENST00000611852 RGL4Q8IZJ4 473 aa16.7■□□□□ 0.26
CCDC28A-202ENST00000611852 SLC35F6Q8N357 371 aa16.7■□□□□ 0.26
CCDC28A-202ENST00000611852 TTC13Q8NBP0 860 aa16.7■□□□□ 0.26
CCDC28A-202ENST00000611852 SNX19Q92543 992 aa16.7■□□□□ 0.26
CCDC28A-202ENST00000611852 SPOCK2Q92563 424 aa16.7■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms