RNA–Protein interactions for RNA: ENST00000599322.5

LIG1-218, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 620 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-218ENST00000599322 EBF2Q9HAK2 575 aa14.32□□□□□ -0.12
LIG1-218ENST00000599322 PCDH18Q9HCL0 1135 aa14.32□□□□□ -0.12
LIG1-218ENST00000599322 DKK3Q9UBP4 350 aa14.32□□□□□ -0.12
LIG1-218ENST00000599322 HS3ST3A1Q9Y663 406 aa14.32□□□□□ -0.12
LIG1-218ENST00000599322 SLCO1B1Q9Y6L6 691 aa14.32□□□□□ -0.12
LIG1-218ENST00000599322 CACNA1EQ15878 2313 aa14.32□□□□□ -0.12
LIG1-218ENST00000599322 A0A1W2PQ67 120 aa14.31□□□□□ -0.12
LIG1-218ENST00000599322 A6NNZ2 444 aa14.31□□□□□ -0.12
LIG1-218ENST00000599322 TMEM110-MUSTN1A8MSY1 372 aa14.31□□□□□ -0.12
LIG1-218ENST00000599322 PAK4O96013 591 aaPredicted RBP14.31□□□□□ -0.12
LIG1-218ENST00000599322 IL1R2P27930 398 aa14.31□□□□□ -0.12
LIG1-218ENST00000599322 MAN1A1P33908 653 aa14.31□□□□□ -0.12
LIG1-218ENST00000599322 ARHGAP25P42331 645 aa14.31□□□□□ -0.12
LIG1-218ENST00000599322 CSNK1DP48730 415 aa14.31□□□□□ -0.12
LIG1-218ENST00000599322 NSUN2Q08J23 767 aaKnown RBP eCLIP14.31□□□□□ -0.12
LIG1-218ENST00000599322 DPYSQ14117 519 aa14.31□□□□□ -0.12
LIG1-218ENST00000599322 MESDQ14696 234 aa14.31□□□□□ -0.12
LIG1-218ENST00000599322 SPA17Q15506 151 aa14.31□□□□□ -0.12
LIG1-218ENST00000599322 ZNF284Q2VY69 593 aa14.31□□□□□ -0.12
LIG1-218ENST00000599322 BRAT1Q6PJG6 821 aa14.31□□□□□ -0.12
LIG1-218ENST00000599322 EXOC2Q96KP1 924 aa14.31□□□□□ -0.12
LIG1-218ENST00000599322 ZNF830Q96NB3 372 aaPredicted RBP14.31□□□□□ -0.12
LIG1-218ENST00000599322 CHP1Q99653 195 aa14.31□□□□□ -0.12
LIG1-218ENST00000599322 MAK16Q9BXY0 300 aaKnown RBP14.31□□□□□ -0.12
LIG1-218ENST00000599322 PCOLCE2Q9UKZ9 415 aa14.31□□□□□ -0.12
LIG1-218ENST00000599322 INTUQ9ULD6 942 aa14.31□□□□□ -0.12
LIG1-218ENST00000599322 NYNRINQ9P2P1 1898 aaKnown RBP14.31□□□□□ -0.12
LIG1-218ENST00000599322 ZZEF1O43149 2961 aa14.3□□□□□ -0.12
LIG1-218ENST00000599322 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP14.3□□□□□ -0.12
LIG1-218ENST00000599322 TM7SF2O76062 418 aa14.3□□□□□ -0.12
LIG1-218ENST00000599322 WNT1P04628 370 aa14.3□□□□□ -0.12
LIG1-218ENST00000599322 KRT10P13645 584 aa14.3□□□□□ -0.12
LIG1-218ENST00000599322 CYLC1P35663 651 aaPredicted RBP14.3□□□□□ -0.12
LIG1-218ENST00000599322 AP1S1P61966 158 aa14.3□□□□□ -0.12
LIG1-218ENST00000599322 IL9RQ01113 521 aa14.3□□□□□ -0.12
LIG1-218ENST00000599322 SLC25A11Q02978 314 aaKnown RBP14.3□□□□□ -0.12
LIG1-218ENST00000599322 LBRQ14739 615 aaKnown RBP14.3□□□□□ -0.12
LIG1-218ENST00000599322 MARC1Q5VT66 337 aa14.3□□□□□ -0.12
LIG1-218ENST00000599322 AFMIDQ63HM1 303 aa14.3□□□□□ -0.12
LIG1-218ENST00000599322 SEL1L3Q68CR1 1132 aa14.3□□□□□ -0.12
LIG1-218ENST00000599322 UNQ6494/PRO21346Q6UXR6 183 aa14.3□□□□□ -0.12
LIG1-218ENST00000599322 CYP4V2Q6ZWL3 525 aaPredicted RBP14.3□□□□□ -0.12
LIG1-218ENST00000599322 PTAR1Q7Z6K3 402 aaPredicted RBP14.3□□□□□ -0.12
LIG1-218ENST00000599322 NDUFAF2Q8N183 169 aa14.3□□□□□ -0.12
LIG1-218ENST00000599322 SLC35G2Q8TBE7 412 aa14.3□□□□□ -0.12
LIG1-218ENST00000599322 TRAF3IP1Q8TDR0 691 aaPredicted RBP14.3□□□□□ -0.12
LIG1-218ENST00000599322 ASB12Q8WXK4 309 aa14.3□□□□□ -0.12
LIG1-218ENST00000599322 CAMK1GQ96NX5 476 aa14.3□□□□□ -0.12
LIG1-218ENST00000599322 PDFQ9HBH1 243 aa14.3□□□□□ -0.12
LIG1-218ENST00000599322 SPTLC3Q9NUV7 552 aa14.3□□□□□ -0.12
LIG1-218ENST00000599322 LHX3Q9UBR4 397 aa14.3□□□□□ -0.12
LIG1-218ENST00000599322 FTSJ1Q9UET6 329 aa14.3□□□□□ -0.12
LIG1-218ENST00000599322 RALYQ9UKM9 306 aaKnown RBP14.3□□□□□ -0.12
LIG1-218ENST00000599322 SPEGQ15772 3267 aa14.29□□□□□ -0.12
LIG1-218ENST00000599322 IGLON5A6NGN9 336 aa14.29□□□□□ -0.12
LIG1-218ENST00000599322 TNFSF14O43557 240 aa14.29□□□□□ -0.12
LIG1-218ENST00000599322 ALPPL2P10696 532 aa14.29□□□□□ -0.12
LIG1-218ENST00000599322 MX2P20592 715 aa14.29□□□□□ -0.12
LIG1-218ENST00000599322 MAGEA1P43355 309 aa14.29□□□□□ -0.12
LIG1-218ENST00000599322 NOP2P46087 812 aaKnown RBP14.29□□□□□ -0.12
LIG1-218ENST00000599322 RABIFP47224 123 aa14.29□□□□□ -0.12
LIG1-218ENST00000599322 RXRGP48443 463 aa14.29□□□□□ -0.12
LIG1-218ENST00000599322 SCNN1BP51168 640 aa14.29□□□□□ -0.12
LIG1-218ENST00000599322 THOP1P52888 689 aa14.29□□□□□ -0.12
LIG1-218ENST00000599322 PTK2BQ14289 1009 aa14.29□□□□□ -0.12
LIG1-218ENST00000599322 ASTE1Q2TB18 679 aaPredicted RBP14.29□□□□□ -0.12
LIG1-218ENST00000599322 TMEM259Q4ZIN3 620 aa14.29□□□□□ -0.12
LIG1-218ENST00000599322 PRAMEF14Q5SWL7 426 aa14.29□□□□□ -0.12
LIG1-218ENST00000599322 TIGD7Q6NT04 549 aaPredicted RBP14.29□□□□□ -0.12
LIG1-218ENST00000599322 DBX2Q6ZNG2 339 aa14.29□□□□□ -0.12
LIG1-218ENST00000599322 ARHGAP12Q8IWW6 846 aa14.29□□□□□ -0.12
LIG1-218ENST00000599322 CCDC170Q8IYT3 715 aa14.29□□□□□ -0.12
LIG1-218ENST00000599322 NETO2Q8NC67 525 aa14.29□□□□□ -0.12
LIG1-218ENST00000599322 TSEN2Q8NCE0 465 aaKnown RBP14.29□□□□□ -0.12
LIG1-218ENST00000599322 DENND6BQ8NEG7 585 aa14.29□□□□□ -0.12
LIG1-218ENST00000599322 RFFLQ8WZ73 363 aa14.29□□□□□ -0.12
LIG1-218ENST00000599322 LENG8Q96PV6 779 aaPredicted RBP14.29□□□□□ -0.12
LIG1-218ENST00000599322 PSKH2Q96QS6 385 aa14.29□□□□□ -0.12
LIG1-218ENST00000599322 ZNF670Q9BS34 389 aa14.29□□□□□ -0.12
LIG1-218ENST00000599322 PACSIN1Q9BY11 444 aa14.29□□□□□ -0.12
LIG1-218ENST00000599322 SCUBE2Q9NQ36 999 aa14.29□□□□□ -0.12
LIG1-218ENST00000599322 EVA1BQ9NVM1 165 aa14.29□□□□□ -0.12
LIG1-218ENST00000599322 KLHL11Q9NVR0 708 aa14.29□□□□□ -0.12
LIG1-218ENST00000599322 ZFR2Q9UPR6 939 aaKnown RBP14.29□□□□□ -0.12
LIG1-218ENST00000599322 TP53BP1Q12888 1972 aaPredicted RBP14.29□□□□□ -0.12
LIG1-218ENST00000599322 NEMP2A6NFY4 417 aa14.28□□□□□ -0.12
LIG1-218ENST00000599322 GOLGA8CPA6NN73 597 aa14.28□□□□□ -0.12
LIG1-218ENST00000599322 GOLGA6L6A8MZA4 724 aa14.28□□□□□ -0.12
LIG1-218ENST00000599322 C10orf142B7Z368 130 aa14.28□□□□□ -0.12
LIG1-218ENST00000599322 H3BM21 787 aa14.28□□□□□ -0.12
LIG1-218ENST00000599322 TOR1BO14657 336 aa14.28□□□□□ -0.12
LIG1-218ENST00000599322 WNT9AO14904 365 aa14.28□□□□□ -0.12
LIG1-218ENST00000599322 LZTS3O60299 673 aaPredicted RBP14.28□□□□□ -0.12
LIG1-218ENST00000599322 LDOC1O95751 146 aaPredicted RBP14.28□□□□□ -0.12
LIG1-218ENST00000599322 IGF2RP11717 2491 aa14.28□□□□□ -0.12
LIG1-218ENST00000599322 CDK4P11802 303 aa14.28□□□□□ -0.12
LIG1-218ENST00000599322 TCF4P15884 667 aa14.28□□□□□ -0.12
LIG1-218ENST00000599322 TIMP2P16035 220 aa14.28□□□□□ -0.12
LIG1-218ENST00000599322 ABL2P42684 1182 aa14.28□□□□□ -0.12
LIG1-218ENST00000599322 SLC1A1P43005 524 aa14.28□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms