RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, human

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TRIM28-211	ENST00000597968	SERINC3	Q13530	473 aa		13.79	□□□□□ -0.2
TRIM28-211	ENST00000597968	LVRN	Q6Q4G3	990 aa		13.79	□□□□□ -0.2
TRIM28-211	ENST00000597968	KDM7A	Q6ZMT4	941 aa		13.79	□□□□□ -0.2
TRIM28-211	ENST00000597968	MACC1	Q6ZN28	852 aa		13.79	□□□□□ -0.2
TRIM28-211	ENST00000597968	TMC6	Q7Z403	805 aa		13.79	□□□□□ -0.2
TRIM28-211	ENST00000597968	DNAAF5	Q86Y56	855 aa		13.79	□□□□□ -0.2
TRIM28-211	ENST00000597968	CCDC185	Q8N715	623 aa		13.79	□□□□□ -0.2
TRIM28-211	ENST00000597968	ATL2	Q8NHH9	583 aa		13.79	□□□□□ -0.2
TRIM28-211	ENST00000597968	CXorf40A	Q8TE69	158 aa		13.79	□□□□□ -0.2
TRIM28-211	ENST00000597968	CCDC97	Q96F63	343 aa	Predicted RBP	13.79	□□□□□ -0.2
TRIM28-211	ENST00000597968	ZNF641	Q96N77	438 aa	Predicted RBP	13.79	□□□□□ -0.2
TRIM28-211	ENST00000597968	KLHL32	Q96NJ5	620 aa		13.79	□□□□□ -0.2
TRIM28-211	ENST00000597968	CNPY3	Q9BT09	278 aa		13.79	□□□□□ -0.2
TRIM28-211	ENST00000597968	BOC	Q9BWV1	1114 aa		13.79	□□□□□ -0.2
TRIM28-211	ENST00000597968	DPH1	Q9BZG8	443 aa		13.79	□□□□□ -0.2
TRIM28-211	ENST00000597968	POLR1B	Q9H9Y6	1135 aa		13.79	□□□□□ -0.2
TRIM28-211	ENST00000597968	FANCL	Q9NW38	375 aa		13.79	□□□□□ -0.2
TRIM28-211	ENST00000597968		U3KQA8	63 aa		13.79	□□□□□ -0.2
TRIM28-211	ENST00000597968	IGSF10	Q6WRI0	2623 aa		13.78	□□□□□ -0.2
TRIM28-211	ENST00000597968	TSPAN11	A1L157	253 aa		13.78	□□□□□ -0.2
TRIM28-211	ENST00000597968	FER	P16591	822 aa		13.78	□□□□□ -0.2
TRIM28-211	ENST00000597968	CSNK1D	P48730	415 aa		13.78	□□□□□ -0.2
TRIM28-211	ENST00000597968	NDST2	P52849	883 aa		13.78	□□□□□ -0.2
TRIM28-211	ENST00000597968	CLDN6	P56747	220 aa		13.78	□□□□□ -0.2
TRIM28-211	ENST00000597968	NR0B2	Q15466	257 aa		13.78	□□□□□ -0.2
TRIM28-211	ENST00000597968	TMEM52B	Q4KMG9	183 aa		13.78	□□□□□ -0.2
TRIM28-211	ENST00000597968	PPP1R15B	Q5SWA1	713 aa		13.78	□□□□□ -0.2
TRIM28-211	ENST00000597968	C6orf132	Q5T0Z8	1188 aa		13.78	□□□□□ -0.2
TRIM28-211	ENST00000597968	DNAJC24	Q6P3W2	148 aa		13.78	□□□□□ -0.2
TRIM28-211	ENST00000597968	BRAT1	Q6PJG6	821 aa		13.78	□□□□□ -0.2
TRIM28-211	ENST00000597968	SASS6	Q6UVJ0	657 aa		13.78	□□□□□ -0.2
TRIM28-211	ENST00000597968	GPR155	Q7Z3F1	870 aa		13.78	□□□□□ -0.2
TRIM28-211	ENST00000597968	ZNF354C	Q86Y25	554 aa		13.78	□□□□□ -0.2
TRIM28-211	ENST00000597968	FSTL5	Q8N475	847 aa	Predicted RBP	13.78	□□□□□ -0.2
TRIM28-211	ENST00000597968	OR6C4	Q8NGE1	309 aa		13.78	□□□□□ -0.2
TRIM28-211	ENST00000597968	IFI44	Q8TCB0	444 aa		13.78	□□□□□ -0.2
TRIM28-211	ENST00000597968	MAPK15	Q8TD08	544 aa		13.78	□□□□□ -0.2
TRIM28-211	ENST00000597968	SCG3	Q8WXD2	468 aa	Known RBP	13.78	□□□□□ -0.2
TRIM28-211	ENST00000597968	WBP1	Q96G27	269 aa		13.78	□□□□□ -0.2
TRIM28-211	ENST00000597968	HIC2	Q96JB3	615 aa		13.78	□□□□□ -0.2
TRIM28-211	ENST00000597968	TUBGCP5	Q96RT8	1024 aa		13.78	□□□□□ -0.2
TRIM28-211	ENST00000597968	PCDHB18P	Q96TA0	734 aa		13.78	□□□□□ -0.2
TRIM28-211	ENST00000597968	AGPAT1	Q99943	283 aa		13.78	□□□□□ -0.2
TRIM28-211	ENST00000597968	NCAPG	Q9BPX3	1015 aa		13.78	□□□□□ -0.2
TRIM28-211	ENST00000597968	SLC13A1	Q9BZW2	595 aa		13.78	□□□□□ -0.2
TRIM28-211	ENST00000597968	THSD1	Q9NS62	852 aa		13.78	□□□□□ -0.2
TRIM28-211	ENST00000597968	APOBEC3B	Q9UH17	382 aa	Known RBP	13.78	□□□□□ -0.2
TRIM28-211	ENST00000597968	FZD10	Q9ULW2	581 aa		13.78	□□□□□ -0.2
TRIM28-211	ENST00000597968	PCDHGA8	Q9Y5G5	932 aa		13.78	□□□□□ -0.2
TRIM28-211	ENST00000597968	BAHCC1	Q9P281	2608 aa		13.78	□□□□□ -0.2
TRIM28-211	ENST00000597968	TRPM6	Q9BX84	2022 aa		13.78	□□□□□ -0.2
TRIM28-211	ENST00000597968	RASA4B	C9J798	803 aa		13.77	□□□□□ -0.21
TRIM28-211	ENST00000597968	EPHB6	O15197	1021 aa		13.77	□□□□□ -0.21
TRIM28-211	ENST00000597968	ATXN7	O15265	892 aa	Predicted RBP	13.77	□□□□□ -0.21
TRIM28-211	ENST00000597968	SPINT1	O43278	529 aa		13.77	□□□□□ -0.21
TRIM28-211	ENST00000597968	RASA4	O43374	803 aa		13.77	□□□□□ -0.21
TRIM28-211	ENST00000597968	USP12	O75317	370 aa		13.77	□□□□□ -0.21
TRIM28-211	ENST00000597968	ITPKB	P27987	946 aa		13.77	□□□□□ -0.21
TRIM28-211	ENST00000597968	RHOA	P61586	193 aa		13.77	□□□□□ -0.21
TRIM28-211	ENST00000597968	UBXN1	Q04323	297 aa		13.77	□□□□□ -0.21
TRIM28-211	ENST00000597968	TLE3	Q04726	772 aa		13.77	□□□□□ -0.21
TRIM28-211	ENST00000597968	EIF2B5	Q13144	721 aa	Known RBP	13.77	□□□□□ -0.21
TRIM28-211	ENST00000597968	ELOC	Q15369	112 aa		13.77	□□□□□ -0.21
TRIM28-211	ENST00000597968	ISX	Q2M1V0	245 aa		13.77	□□□□□ -0.21
TRIM28-211	ENST00000597968	RAB6C	Q53S08	254 aa		13.77	□□□□□ -0.21
TRIM28-211	ENST00000597968	BROX	Q5VW32	411 aa		13.77	□□□□□ -0.21
TRIM28-211	ENST00000597968	ACAD10	Q6JQN1	1059 aa		13.77	□□□□□ -0.21
TRIM28-211	ENST00000597968	ESRP1	Q6NXG1	681 aa	Known RBP	13.77	□□□□□ -0.21
TRIM28-211	ENST00000597968	PSTK	Q8IV42	348 aa	Known RBP	13.77	□□□□□ -0.21
TRIM28-211	ENST00000597968	LMX1A	Q8TE12	382 aa		13.77	□□□□□ -0.21
TRIM28-211	ENST00000597968	PCMTD1	Q96MG8	357 aa	Predicted RBP	13.77	□□□□□ -0.21
TRIM28-211	ENST00000597968	FCRL3	Q96P31	734 aa	Predicted RBP	13.77	□□□□□ -0.21
TRIM28-211	ENST00000597968	GBP4	Q96PP9	640 aa		13.77	□□□□□ -0.21
TRIM28-211	ENST00000597968	RAB6C	Q9H0N0	254 aa		13.77	□□□□□ -0.21
TRIM28-211	ENST00000597968	NOL6	Q9H6R4	1146 aa	Known RBP	13.77	□□□□□ -0.21
TRIM28-211	ENST00000597968	CCP110	O43303	1012 aa		13.76	□□□□□ -0.21
TRIM28-211	ENST00000597968	CS	O75390	466 aa	Known RBP	13.76	□□□□□ -0.21
TRIM28-211	ENST00000597968	NEBL	O76041	1014 aa		13.76	□□□□□ -0.21
TRIM28-211	ENST00000597968	ANXA6	P08133	673 aa		13.76	□□□□□ -0.21
TRIM28-211	ENST00000597968	ALPI	P09923	528 aa		13.76	□□□□□ -0.21
TRIM28-211	ENST00000597968	CDK11B	P21127	795 aa	Known RBP	13.76	□□□□□ -0.21
TRIM28-211	ENST00000597968	XPA	P23025	273 aa	Predicted RBP	13.76	□□□□□ -0.21
TRIM28-211	ENST00000597968	HTR1B	P28222	390 aa		13.76	□□□□□ -0.21
TRIM28-211	ENST00000597968	GK	P32189	559 aa		13.76	□□□□□ -0.21
TRIM28-211	ENST00000597968	GABRE	P78334	506 aa		13.76	□□□□□ -0.21
TRIM28-211	ENST00000597968	PPARD	Q03181	441 aa		13.76	□□□□□ -0.21
TRIM28-211	ENST00000597968	NSUN2	Q08J23	767 aa	Known RBP eCLIP	13.76	□□□□□ -0.21
TRIM28-211	ENST00000597968	C19orf57	Q0VDD7	668 aa		13.76	□□□□□ -0.21
TRIM28-211	ENST00000597968	RFTN1	Q14699	578 aa	Predicted RBP	13.76	□□□□□ -0.21
TRIM28-211	ENST00000597968	STX1A	Q16623	288 aa		13.76	□□□□□ -0.21
TRIM28-211	ENST00000597968	UGP2	Q16851	508 aa		13.76	□□□□□ -0.21
TRIM28-211	ENST00000597968	ZNF542P	Q5EBM4	170 aa		13.76	□□□□□ -0.21
TRIM28-211	ENST00000597968	TMCO4	Q5TGY1	634 aa		13.76	□□□□□ -0.21
TRIM28-211	ENST00000597968	ERAP2	Q6P179	960 aa		13.76	□□□□□ -0.21
TRIM28-211	ENST00000597968	SCYL2	Q6P3W7	929 aa		13.76	□□□□□ -0.21
TRIM28-211	ENST00000597968	DCUN1D2	Q6PH85	259 aa		13.76	□□□□□ -0.21
TRIM28-211	ENST00000597968	RBM44	Q6ZP01	1051 aa	Known RBP	13.76	□□□□□ -0.21
TRIM28-211	ENST00000597968	PHLDB2	Q86SQ0	1253 aa		13.76	□□□□□ -0.21
TRIM28-211	ENST00000597968	SPACA3	Q8IXA5	215 aa		13.76	□□□□□ -0.21
TRIM28-211	ENST00000597968	PHACTR4	Q8IZ21	702 aa		13.76	□□□□□ -0.21

Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms