RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 TEX26Q8N6G2 289 aa12.04□□□□□ -0.48
LIG3-213ENST00000590630 KRT35Q92764 455 aa12.04□□□□□ -0.48
LIG3-213ENST00000590630 MGME1Q9BQP7 344 aa12.04□□□□□ -0.48
LIG3-213ENST00000590630 ORAI3Q9BRQ5 295 aa12.04□□□□□ -0.48
LIG3-213ENST00000590630 EDEM2Q9BV94 578 aa12.04□□□□□ -0.48
LIG3-213ENST00000590630 ZDHHC5Q9C0B5 715 aa12.04□□□□□ -0.48
LIG3-213ENST00000590630 AMACRQ9UHK6 382 aa12.04□□□□□ -0.48
LIG3-213ENST00000590630 CDV3Q9UKY7 258 aaKnown RBP12.04□□□□□ -0.48
LIG3-213ENST00000590630 DMTF1Q9Y222 760 aa12.04□□□□□ -0.48
LIG3-213ENST00000590630 PCDHA3Q9Y5H8 950 aa12.04□□□□□ -0.48
LIG3-213ENST00000590630 HEY1Q9Y5J3 304 aa12.04□□□□□ -0.48
LIG3-213ENST00000590630 CABIN1Q9Y6J0 2220 aa12.04□□□□□ -0.48
LIG3-213ENST00000590630 TMEM131Q92545 1883 aa12.04□□□□□ -0.48
LIG3-213ENST00000590630 LRRK1Q38SD2 2015 aa12.03□□□□□ -0.48
LIG3-213ENST00000590630 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP12.03□□□□□ -0.48
LIG3-213ENST00000590630 TSPAN11A1L157 253 aa12.03□□□□□ -0.48
LIG3-213ENST00000590630 ARHGAP33O14559 1287 aa12.03□□□□□ -0.48
LIG3-213ENST00000590630 MUSKO15146 869 aa12.03□□□□□ -0.48
LIG3-213ENST00000590630 MATN3O15232 486 aa12.03□□□□□ -0.48
LIG3-213ENST00000590630 INSIG1O15503 277 aa12.03□□□□□ -0.48
LIG3-213ENST00000590630 TSPAN6O43657 245 aa12.03□□□□□ -0.48
LIG3-213ENST00000590630 KRT86O43790 486 aa12.03□□□□□ -0.48
LIG3-213ENST00000590630 GDF9O60383 454 aa12.03□□□□□ -0.48
LIG3-213ENST00000590630 RNGTTO60942 597 aaKnown RBP12.03□□□□□ -0.48
LIG3-213ENST00000590630 PCDH8O95206 1070 aa12.03□□□□□ -0.48
LIG3-213ENST00000590630 MAP3K6O95382 1288 aa12.03□□□□□ -0.48
LIG3-213ENST00000590630 PIGNO95427 931 aa12.03□□□□□ -0.48
LIG3-213ENST00000590630 ENGP17813 658 aa12.03□□□□□ -0.48
LIG3-213ENST00000590630 CTNNA2P26232 953 aa12.03□□□□□ -0.48
LIG3-213ENST00000590630 GRIA4P48058 902 aa12.03□□□□□ -0.48
LIG3-213ENST00000590630 MARCKSL1P49006 195 aa12.03□□□□□ -0.48
LIG3-213ENST00000590630 NR2C2P49116 596 aa12.03□□□□□ -0.48
LIG3-213ENST00000590630 SCNN1BP51168 640 aa12.03□□□□□ -0.48
LIG3-213ENST00000590630 COPS2P61201 443 aa12.03□□□□□ -0.48
LIG3-213ENST00000590630 PPIDQ08752 370 aaKnown RBP12.03□□□□□ -0.48
LIG3-213ENST00000590630 SLC10A2Q12908 348 aaPredicted RBP12.03□□□□□ -0.48
LIG3-213ENST00000590630 PDK1Q15118 436 aa12.03□□□□□ -0.48
LIG3-213ENST00000590630 TEAD4Q15561 434 aa12.03□□□□□ -0.48
LIG3-213ENST00000590630 PPP2R5EQ16537 467 aa12.03□□□□□ -0.48
LIG3-213ENST00000590630 CFAP58Q5T655 872 aa12.03□□□□□ -0.48
LIG3-213ENST00000590630 KIAA1161Q6NSJ0 714 aa12.03□□□□□ -0.48
LIG3-213ENST00000590630 BZW1Q7L1Q6 419 aaKnown RBP12.03□□□□□ -0.48
LIG3-213ENST00000590630 TTC7BQ86TV6 843 aa12.03□□□□□ -0.48
LIG3-213ENST00000590630 HORMAD1Q86X24 394 aa12.03□□□□□ -0.48
LIG3-213ENST00000590630 CCDC50Q8IVM0 306 aa12.03□□□□□ -0.48
LIG3-213ENST00000590630 CCNYQ8ND76 341 aa12.03□□□□□ -0.48
LIG3-213ENST00000590630 MAML1Q92585 1016 aa12.03□□□□□ -0.48
LIG3-213ENST00000590630 NUDCD1Q96RS6 583 aa12.03□□□□□ -0.48
LIG3-213ENST00000590630 BRD8Q9H0E9 1235 aa12.03□□□□□ -0.48
LIG3-213ENST00000590630 SUV39H2Q9H5I1 410 aa12.03□□□□□ -0.48
LIG3-213ENST00000590630 TM9SF3Q9HD45 589 aa12.03□□□□□ -0.48
LIG3-213ENST00000590630 TMEM9BQ9NQ34 198 aa12.03□□□□□ -0.48
LIG3-213ENST00000590630 RXFP3Q9NSD7 469 aa12.03□□□□□ -0.48
LIG3-213ENST00000590630 TRIM10Q9UDY6 481 aa12.03□□□□□ -0.48
LIG3-213ENST00000590630 FADS3Q9Y5Q0 445 aa12.03□□□□□ -0.48
LIG3-213ENST00000590630 A0A1W2PQU0 124 aa12.02□□□□□ -0.49
LIG3-213ENST00000590630 MIF4GDA9UHW6 222 aaKnown RBP12.02□□□□□ -0.49
LIG3-213ENST00000590630 NEMP1O14524 444 aa12.02□□□□□ -0.49
LIG3-213ENST00000590630 PPP1R12AO14974 1030 aaPredicted RBP12.02□□□□□ -0.49
LIG3-213ENST00000590630 AREL1O15033 823 aa12.02□□□□□ -0.49
LIG3-213ENST00000590630 CST8O60676 142 aa12.02□□□□□ -0.49
LIG3-213ENST00000590630 SOCS5O75159 536 aa12.02□□□□□ -0.49
LIG3-213ENST00000590630 CCDC175P0C221 793 aa12.02□□□□□ -0.49
LIG3-213ENST00000590630 CCNB1P14635 433 aa12.02□□□□□ -0.49
LIG3-213ENST00000590630 CR2P20023 1033 aa12.02□□□□□ -0.49
LIG3-213ENST00000590630 TGM2P21980 687 aa12.02□□□□□ -0.49
LIG3-213ENST00000590630 XPAP23025 273 aaPredicted RBP12.02□□□□□ -0.49
LIG3-213ENST00000590630 MAT2AP31153 395 aaKnown RBP12.02□□□□□ -0.49
LIG3-213ENST00000590630 ABL2P42684 1182 aa12.02□□□□□ -0.49
LIG3-213ENST00000590630 ATXN3P54252 364 aaPredicted RBP12.02□□□□□ -0.49
LIG3-213ENST00000590630 RWDD2BP57060 319 aa12.02□□□□□ -0.49
LIG3-213ENST00000590630 DYNLT1P63172 113 aa12.02□□□□□ -0.49
LIG3-213ENST00000590630 RPS21P63220 83 aaKnown RBP12.02□□□□□ -0.49
LIG3-213ENST00000590630 CCZ1BP86790 482 aa12.02□□□□□ -0.49
LIG3-213ENST00000590630 CCZ1P86791 482 aaPredicted RBP12.02□□□□□ -0.49
LIG3-213ENST00000590630 BCL2L1Q07817 233 aa12.02□□□□□ -0.49
LIG3-213ENST00000590630 ELP6Q0PNE2 266 aa12.02□□□□□ -0.49
LIG3-213ENST00000590630 RSPO4Q2I0M5 234 aaPredicted RBP12.02□□□□□ -0.49
LIG3-213ENST00000590630 ZNF284Q2VY69 593 aa12.02□□□□□ -0.49
LIG3-213ENST00000590630 TMEM259Q4ZIN3 620 aa12.02□□□□□ -0.49
LIG3-213ENST00000590630 STPG1Q5TH74 334 aa12.02□□□□□ -0.49
LIG3-213ENST00000590630 NAPEPLDQ6IQ20 393 aa12.02□□□□□ -0.49
LIG3-213ENST00000590630 IL27RAQ6UWB1 636 aa12.02□□□□□ -0.49
LIG3-213ENST00000590630 PEX26Q7Z412 305 aa12.02□□□□□ -0.49
LIG3-213ENST00000590630 NT5DC3Q86UY8 548 aa12.02□□□□□ -0.49
LIG3-213ENST00000590630 CAMK1DQ8IU85 385 aa12.02□□□□□ -0.49
LIG3-213ENST00000590630 CCDC13Q8IYE1 715 aa12.02□□□□□ -0.49
LIG3-213ENST00000590630 PGBD5Q8N414 524 aa12.02□□□□□ -0.49
LIG3-213ENST00000590630 UBE2Q2Q8WVN8 375 aa12.02□□□□□ -0.49
LIG3-213ENST00000590630 SPOCK2Q92563 424 aa12.02□□□□□ -0.49
LIG3-213ENST00000590630 ANP32BQ92688 251 aaKnown RBP12.02□□□□□ -0.49
LIG3-213ENST00000590630 SKA1Q96BD8 255 aa12.02□□□□□ -0.49
LIG3-213ENST00000590630 ECHDC3Q96DC8 303 aa12.02□□□□□ -0.49
LIG3-213ENST00000590630 FEM1CQ96JP0 617 aa12.02□□□□□ -0.49
LIG3-213ENST00000590630 SERAC1Q96JX3 654 aa12.02□□□□□ -0.49
LIG3-213ENST00000590630 OLFM3Q96PB7 478 aa12.02□□□□□ -0.49
LIG3-213ENST00000590630 LGMNQ99538 433 aa12.02□□□□□ -0.49
LIG3-213ENST00000590630 POLR1EQ9GZS1 481 aaKnown RBP12.02□□□□□ -0.49
LIG3-213ENST00000590630 EBF2Q9HAK2 575 aa12.02□□□□□ -0.49
LIG3-213ENST00000590630 SCUBE2Q9NQ36 999 aa12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms