RNA–Protein interactions for RNA: ENST00000590499.1

SMAD4-211, Transcript of SMAD family member 4, humanhuman

TSL 4

Gene SMAD4, Length 545 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-211ENST00000590499 NPWQ8N729 165 aa11.39□□□□□ -0.59
SMAD4-211ENST00000590499 OR2I1PQ8NGU4 316 aa11.39□□□□□ -0.59
SMAD4-211ENST00000590499 ZNF564Q8TBZ8 553 aaPredicted RBP11.39□□□□□ -0.59
SMAD4-211ENST00000590499 GRIN3AQ8TCU5 1115 aa11.39□□□□□ -0.59
SMAD4-211ENST00000590499 TEKT4Q8WW24 435 aa11.39□□□□□ -0.59
SMAD4-211ENST00000590499 CASKIN2Q8WXE0 1202 aa11.39□□□□□ -0.59
SMAD4-211ENST00000590499 HEPHQ9BQS7 1158 aa11.39□□□□□ -0.59
SMAD4-211ENST00000590499 GTPBP2Q9BX10 602 aaKnown RBP11.39□□□□□ -0.59
SMAD4-211ENST00000590499 HDAC8Q9BY41 377 aa11.39□□□□□ -0.59
SMAD4-211ENST00000590499 TM6SF2Q9BZW4 377 aa11.39□□□□□ -0.59
SMAD4-211ENST00000590499 RBSNQ9H1K0 784 aa11.39□□□□□ -0.59
SMAD4-211ENST00000590499 DONSONQ9NYP3 566 aa11.39□□□□□ -0.59
SMAD4-211ENST00000590499 CWC15Q9P013 229 aaKnown RBP11.39□□□□□ -0.59
SMAD4-211ENST00000590499 UVRAGQ9P2Y5 699 aa11.39□□□□□ -0.59
SMAD4-211ENST00000590499 TPX2Q9ULW0 747 aaKnown RBP11.39□□□□□ -0.59
SMAD4-211ENST00000590499 HPCAL4Q9UM19 191 aa11.39□□□□□ -0.59
SMAD4-211ENST00000590499 CHD8Q9HCK8 2581 aa11.39□□□□□ -0.59
SMAD4-211ENST00000590499 ANKRD36A6QL64 1941 aa11.39□□□□□ -0.59
SMAD4-211ENST00000590499 A0A1B0GVT2 93 aa11.38□□□□□ -0.59
SMAD4-211ENST00000590499 A0A1W2PR77 199 aa11.38□□□□□ -0.59
SMAD4-211ENST00000590499 MYO1FO00160 1098 aa11.38□□□□□ -0.59
SMAD4-211ENST00000590499 KPNA3O00505 521 aaPredicted RBP11.38□□□□□ -0.59
SMAD4-211ENST00000590499 WNT9AO14904 365 aa11.38□□□□□ -0.59
SMAD4-211ENST00000590499 BUB1O43683 1085 aa11.38□□□□□ -0.59
SMAD4-211ENST00000590499 TPM1P09493 284 aa11.38□□□□□ -0.59
SMAD4-211ENST00000590499 TMEM253P0C7T8 217 aa11.38□□□□□ -0.59
SMAD4-211ENST00000590499 RARAP10276 462 aa11.38□□□□□ -0.59
SMAD4-211ENST00000590499 ITGB7P26010 798 aa11.38□□□□□ -0.59
SMAD4-211ENST00000590499 CSNK1EP49674 416 aaKnown RBP11.38□□□□□ -0.59
SMAD4-211ENST00000590499 RACK1P63244 317 aaKnown RBP11.38□□□□□ -0.59
SMAD4-211ENST00000590499 LAYNQ6UX15 382 aa11.38□□□□□ -0.59
SMAD4-211ENST00000590499 ERN2Q76MJ5 926 aaKnown RBP11.38□□□□□ -0.59
SMAD4-211ENST00000590499 POLNQ7Z5Q5 900 aa11.38□□□□□ -0.59
SMAD4-211ENST00000590499 PIP4P1Q86T03 277 aa11.38□□□□□ -0.59
SMAD4-211ENST00000590499 CPNE8Q86YQ8 564 aa11.38□□□□□ -0.59
SMAD4-211ENST00000590499 CNGA4Q8IV77 575 aa11.38□□□□□ -0.59
SMAD4-211ENST00000590499 TC2NQ8N9U0 490 aa11.38□□□□□ -0.59
SMAD4-211ENST00000590499 OR2AP1Q8NGE2 309 aa11.38□□□□□ -0.59
SMAD4-211ENST00000590499 FAM71BQ8TC56 605 aa11.38□□□□□ -0.59
SMAD4-211ENST00000590499 CELF6Q96J87 481 aaKnown RBP11.38□□□□□ -0.59
SMAD4-211ENST00000590499 LRIG1Q96JA1 1093 aa11.38□□□□□ -0.59
SMAD4-211ENST00000590499 SLC6A18Q96N87 628 aa11.38□□□□□ -0.59
SMAD4-211ENST00000590499 TRIM5Q9C035 493 aa11.38□□□□□ -0.59
SMAD4-211ENST00000590499 SLC39A8Q9C0K1 460 aa11.38□□□□□ -0.59
SMAD4-211ENST00000590499 NHEJ1Q9H9Q4 299 aaPredicted RBP11.38□□□□□ -0.59
SMAD4-211ENST00000590499 PREBQ9HCU5 417 aa11.38□□□□□ -0.59
SMAD4-211ENST00000590499 STAU2Q9NUL3 570 aaKnown RBP eCLIP11.38□□□□□ -0.59
SMAD4-211ENST00000590499 ZNHIT6Q9NWK9 470 aaKnown RBP11.38□□□□□ -0.59
SMAD4-211ENST00000590499 HECAQ9UBI9 543 aaPredicted RBP11.38□□□□□ -0.59
SMAD4-211ENST00000590499 LHX3Q9UBR4 397 aa11.38□□□□□ -0.59
SMAD4-211ENST00000590499 SHROOM3Q8TF72 1996 aa11.37□□□□□ -0.59
SMAD4-211ENST00000590499 TBC1D3DA0A087WVF3 549 aa11.37□□□□□ -0.59
SMAD4-211ENST00000590499 TBC1D3IA0A087WXS9 549 aa11.37□□□□□ -0.59
SMAD4-211ENST00000590499 TBC1D3EA0A087X179 549 aa11.37□□□□□ -0.59
SMAD4-211ENST00000590499 TBC1D3KA0A087X1G2 549 aa11.37□□□□□ -0.59
SMAD4-211ENST00000590499 TBC1D3FA6NER0 549 aaPredicted RBP11.37□□□□□ -0.59
SMAD4-211ENST00000590499 TBC1D3LB9A6J9 549 aa11.37□□□□□ -0.59
SMAD4-211ENST00000590499 AKR1B15C9JRZ8 316 aaPredicted RBP11.37□□□□□ -0.59
SMAD4-211ENST00000590499 H3BRJ5 948 aa11.37□□□□□ -0.59
SMAD4-211ENST00000590499 J3KR12 359 aa11.37□□□□□ -0.59
SMAD4-211ENST00000590499 VILLO15195 856 aa11.37□□□□□ -0.59
SMAD4-211ENST00000590499 AKR1B10O60218 316 aa11.37□□□□□ -0.59
SMAD4-211ENST00000590499 PRAMEF11O60813 436 aa11.37□□□□□ -0.59
SMAD4-211ENST00000590499 OPHN1O60890 802 aa11.37□□□□□ -0.59
SMAD4-211ENST00000590499 PROSCO94903 275 aa11.37□□□□□ -0.59
SMAD4-211ENST00000590499 KCNK5O95279 499 aa11.37□□□□□ -0.59
SMAD4-211ENST00000590499 WNT1P04628 370 aa11.37□□□□□ -0.59
SMAD4-211ENST00000590499 H2AFZP0C0S5 128 aa11.37□□□□□ -0.59
SMAD4-211ENST00000590499 TBC1D3HP0C7X1 549 aa11.37□□□□□ -0.59
SMAD4-211ENST00000590499 CD59P13987 128 aa11.37□□□□□ -0.59
SMAD4-211ENST00000590499 CSRP1P21291 193 aaKnown RBP11.37□□□□□ -0.59
SMAD4-211ENST00000590499 GKP32189 559 aa11.37□□□□□ -0.59
SMAD4-211ENST00000590499 PAPOLAP51003 745 aaKnown RBP11.37□□□□□ -0.59
SMAD4-211ENST00000590499 DNA2P51530 1060 aa11.37□□□□□ -0.59
SMAD4-211ENST00000590499 ARSEP51690 589 aa11.37□□□□□ -0.59
SMAD4-211ENST00000590499 ATXN3P54252 364 aaPredicted RBP11.37□□□□□ -0.59
SMAD4-211ENST00000590499 SNRPD1P62314 119 aaKnown RBP11.37□□□□□ -0.59
SMAD4-211ENST00000590499 CYTH1Q15438 398 aa11.37□□□□□ -0.59
SMAD4-211ENST00000590499 DBN1Q16643 649 aa11.37□□□□□ -0.59
SMAD4-211ENST00000590499 KIF19Q2TAC6 998 aa11.37□□□□□ -0.59
SMAD4-211ENST00000590499 MYLK3Q32MK0 819 aa11.37□□□□□ -0.59
SMAD4-211ENST00000590499 UAP1L1Q3KQV9 507 aa11.37□□□□□ -0.59
SMAD4-211ENST00000590499 OXLD1Q5BKU9 147 aa11.37□□□□□ -0.59
SMAD4-211ENST00000590499 ATXN7L2Q5T6C5 722 aaPredicted RBP11.37□□□□□ -0.59
SMAD4-211ENST00000590499 TBC1D3GQ6DHY5 549 aa11.37□□□□□ -0.59
SMAD4-211ENST00000590499 TBC1D3CQ6IPX1 549 aa11.37□□□□□ -0.59
SMAD4-211ENST00000590499 H2AFVQ71UI9 128 aa11.37□□□□□ -0.59
SMAD4-211ENST00000590499 PARS2Q7L3T8 475 aaKnown RBP11.37□□□□□ -0.59
SMAD4-211ENST00000590499 GAS2L3Q86XJ1 694 aa11.37□□□□□ -0.59
SMAD4-211ENST00000590499 TP53INP2Q8IXH6 220 aa11.37□□□□□ -0.59
SMAD4-211ENST00000590499 TBC1D3Q8IZP1 549 aaPredicted RBP11.37□□□□□ -0.59
SMAD4-211ENST00000590499 NETO2Q8NC67 525 aa11.37□□□□□ -0.59
SMAD4-211ENST00000590499 OR6K2Q8NGY2 324 aa11.37□□□□□ -0.59
SMAD4-211ENST00000590499 CTNNBL1Q8WYA6 563 aaPredicted RBP11.37□□□□□ -0.59
SMAD4-211ENST00000590499 CSPG4P5Q96PW8 444 aa11.37□□□□□ -0.59
SMAD4-211ENST00000590499 DEF6Q9H4E7 631 aa11.37□□□□□ -0.59
SMAD4-211ENST00000590499 ZDHHC6Q9H6R6 413 aa11.37□□□□□ -0.59
SMAD4-211ENST00000590499 ZWILCHQ9H900 591 aa11.37□□□□□ -0.59
SMAD4-211ENST00000590499 IL21RQ9HBE5 538 aa11.37□□□□□ -0.59
SMAD4-211ENST00000590499 PCDH18Q9HCL0 1135 aa11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms