RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 MUSKO15146 869 aa14.31□□□□□ -0.12
LIG3-205ENST00000585941 INSIG1O15503 277 aa14.31□□□□□ -0.12
LIG3-205ENST00000585941 GREM1O60565 184 aa14.31□□□□□ -0.12
LIG3-205ENST00000585941 AHSGP02765 367 aa14.31□□□□□ -0.12
LIG3-205ENST00000585941 PROCP04070 461 aa14.31□□□□□ -0.12
LIG3-205ENST00000585941 CR2P20023 1033 aa14.31□□□□□ -0.12
LIG3-205ENST00000585941 GRK2P25098 689 aa14.31□□□□□ -0.12
LIG3-205ENST00000585941 CRABP2P29373 138 aa14.31□□□□□ -0.12
LIG3-205ENST00000585941 CD151P48509 253 aa14.31□□□□□ -0.12
LIG3-205ENST00000585941 SGSHP51688 502 aa14.31□□□□□ -0.12
LIG3-205ENST00000585941 ACTN3Q08043 901 aaPredicted RBP14.31□□□□□ -0.12
LIG3-205ENST00000585941 CHI3L2Q15782 390 aa14.31□□□□□ -0.12
LIG3-205ENST00000585941 SPDYAQ5MJ70 313 aa14.31□□□□□ -0.12
LIG3-205ENST00000585941 GAREM2Q75VX8 874 aa14.31□□□□□ -0.12
LIG3-205ENST00000585941 CLEC14AQ86T13 490 aa14.31□□□□□ -0.12
LIG3-205ENST00000585941 MRPL43Q8N983 215 aaKnown RBP14.31□□□□□ -0.12
LIG3-205ENST00000585941 BRSK1Q8TDC3 778 aa14.31□□□□□ -0.12
LIG3-205ENST00000585941 C10orf82Q8WW14 230 aa14.31□□□□□ -0.12
LIG3-205ENST00000585941 PPM1EQ8WY54 764 aa14.31□□□□□ -0.12
LIG3-205ENST00000585941 WBP2Q969T9 261 aa14.31□□□□□ -0.12
LIG3-205ENST00000585941 NUDCD1Q96RS6 583 aa14.31□□□□□ -0.12
LIG3-205ENST00000585941 MFSD1Q9H3U5 465 aa14.31□□□□□ -0.12
LIG3-205ENST00000585941 SCUBE2Q9NQ36 999 aa14.31□□□□□ -0.12
LIG3-205ENST00000585941 SLC2A6Q9UGQ3 507 aa14.31□□□□□ -0.12
LIG3-205ENST00000585941 FBXO5Q9UKT4 447 aa14.31□□□□□ -0.12
LIG3-205ENST00000585941 EMCNQ9ULC0 261 aa14.31□□□□□ -0.12
LIG3-205ENST00000585941 SH3BP1Q9Y3L3 701 aa14.31□□□□□ -0.12
LIG3-205ENST00000585941 CCDC78A2IDD5 438 aa14.3□□□□□ -0.12
LIG3-205ENST00000585941 SOBPA7XYQ1 873 aa14.3□□□□□ -0.12
LIG3-205ENST00000585941 ANKRD65E5RJM6 399 aa14.3□□□□□ -0.12
LIG3-205ENST00000585941 TLL1O43897 1013 aa14.3□□□□□ -0.12
LIG3-205ENST00000585941 C2P06681 752 aa14.3□□□□□ -0.12
LIG3-205ENST00000585941 DDX6P26196 483 aaKnown RBP eCLIP14.3□□□□□ -0.12
LIG3-205ENST00000585941 CTNNB1P35222 781 aa14.3□□□□□ -0.12
LIG3-205ENST00000585941 CSRP3P50461 194 aa14.3□□□□□ -0.12
LIG3-205ENST00000585941 ACVR1Q04771 509 aa14.3□□□□□ -0.12
LIG3-205ENST00000585941 BST1Q10588 318 aa14.3□□□□□ -0.12
LIG3-205ENST00000585941 SF3A3Q12874 501 aaKnown RBP eCLIP14.3□□□□□ -0.12
LIG3-205ENST00000585941 STX3Q13277 289 aa14.3□□□□□ -0.12
LIG3-205ENST00000585941 SLC12A1Q13621 1099 aa14.3□□□□□ -0.12
LIG3-205ENST00000585941 CDH18Q13634 790 aa14.3□□□□□ -0.12
LIG3-205ENST00000585941 IHHQ14623 411 aa14.3□□□□□ -0.12
LIG3-205ENST00000585941 USP10Q14694 798 aaKnown RBP14.3□□□□□ -0.12
LIG3-205ENST00000585941 GRM3Q14832 879 aa14.3□□□□□ -0.12
LIG3-205ENST00000585941 SMAD1Q15797 465 aaKnown RBP14.3□□□□□ -0.12
LIG3-205ENST00000585941 FASTKD1Q53R41 847 aaKnown RBP14.3□□□□□ -0.12
LIG3-205ENST00000585941 PPM1LQ5SGD2 360 aa14.3□□□□□ -0.12
LIG3-205ENST00000585941 ZNF470Q6ECI4 717 aa14.3□□□□□ -0.12
LIG3-205ENST00000585941 CMC1Q7Z7K0 106 aa14.3□□□□□ -0.12
LIG3-205ENST00000585941 CARNMT1Q8N4J0 409 aa14.3□□□□□ -0.12
LIG3-205ENST00000585941 PPP1R14CQ8TAE6 165 aa14.3□□□□□ -0.12
LIG3-205ENST00000585941 RDH11Q8TC12 318 aa14.3□□□□□ -0.12
LIG3-205ENST00000585941 ATXN7L3BQ96GX2 97 aa14.3□□□□□ -0.12
LIG3-205ENST00000585941 NPHS2Q9NP85 383 aa14.3□□□□□ -0.12
LIG3-205ENST00000585941 ABCF3Q9NUQ8 709 aa14.3□□□□□ -0.12
LIG3-205ENST00000585941 THAP1Q9NVV9 213 aa14.3□□□□□ -0.12
LIG3-205ENST00000585941 SLC39A10Q9ULF5 831 aa14.3□□□□□ -0.12
LIG3-205ENST00000585941 HELZP42694 1942 aaKnown RBP14.3□□□□□ -0.12
LIG3-205ENST00000585941 ALPK3Q96L96 1907 aa14.3□□□□□ -0.12
LIG3-205ENST00000585941 CXorf51AA0A1B0GTR3 108 aa14.3□□□□□ -0.12
LIG3-205ENST00000585941 GOLGA8TH3BQL2 631 aa14.3□□□□□ -0.12
LIG3-205ENST00000585941 SNNO75324 88 aaPredicted RBP14.3□□□□□ -0.12
LIG3-205ENST00000585941 H2AFYO75367 372 aaKnown RBP14.3□□□□□ -0.12
LIG3-205ENST00000585941 CRTAMO95727 393 aa14.3□□□□□ -0.12
LIG3-205ENST00000585941 STMN1P16949 149 aa14.3□□□□□ -0.12
LIG3-205ENST00000585941 HOXB8P17481 243 aaPredicted RBP14.3□□□□□ -0.12
LIG3-205ENST00000585941 SLC1A2P43004 574 aa14.3□□□□□ -0.12
LIG3-205ENST00000585941 SCTRP47872 440 aa14.3□□□□□ -0.12
LIG3-205ENST00000585941 CLCN5P51795 746 aa14.3□□□□□ -0.12
LIG3-205ENST00000585941 KPNA2P52292 529 aaKnown RBP14.3□□□□□ -0.12
LIG3-205ENST00000585941 PRAMEP78395 509 aa14.3□□□□□ -0.12
LIG3-205ENST00000585941 CYP4F8P98187 520 aa14.3□□□□□ -0.12
LIG3-205ENST00000585941 POU4F1Q01851 419 aa14.3□□□□□ -0.12
LIG3-205ENST00000585941 CYTH1Q15438 398 aa14.3□□□□□ -0.12
LIG3-205ENST00000585941 GALNTL6Q49A17 601 aa14.3□□□□□ -0.12
LIG3-205ENST00000585941 MPPE1Q53F39 396 aa14.3□□□□□ -0.12
LIG3-205ENST00000585941 PPM1JQ5JR12 505 aa14.3□□□□□ -0.12
LIG3-205ENST00000585941 RAPH1Q70E73 1250 aa14.3□□□□□ -0.12
LIG3-205ENST00000585941 METTL3Q86U44 580 aaKnown RBP14.3□□□□□ -0.12
LIG3-205ENST00000585941 CRLF3Q8IUI8 442 aa14.3□□□□□ -0.12
LIG3-205ENST00000585941 MAB21L3Q8N8X9 362 aa14.3□□□□□ -0.12
LIG3-205ENST00000585941 DCAF4L2Q8NA75 395 aa14.3□□□□□ -0.12
LIG3-205ENST00000585941 STYXQ8WUJ0 223 aa14.3□□□□□ -0.12
LIG3-205ENST00000585941 SCG3Q8WXD2 468 aaKnown RBP14.3□□□□□ -0.12
LIG3-205ENST00000585941 LRRC37BQ96QE4 947 aa14.3□□□□□ -0.12
LIG3-205ENST00000585941 TRIB3Q96RU7 358 aa14.3□□□□□ -0.12
LIG3-205ENST00000585941 SIKE1Q9BRV8 207 aa14.3□□□□□ -0.12
LIG3-205ENST00000585941 FEM1AQ9BSK4 669 aa14.3□□□□□ -0.12
LIG3-205ENST00000585941 MECRQ9BV79 373 aa14.3□□□□□ -0.12
LIG3-205ENST00000585941 NOD2Q9HC29 1040 aa14.3□□□□□ -0.12
LIG3-205ENST00000585941 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP14.3□□□□□ -0.12
LIG3-205ENST00000585941 CXXC1Q9P0U4 656 aaPredicted RBP14.3□□□□□ -0.12
LIG3-205ENST00000585941 COPG2Q9UBF2 871 aa14.3□□□□□ -0.12
LIG3-205ENST00000585941 VPS28Q9UK41 221 aa14.3□□□□□ -0.12
LIG3-205ENST00000585941 SLC12A4Q9UP95 1085 aa14.3□□□□□ -0.12
LIG3-205ENST00000585941 C2orf71A6NGG8 1288 aa14.29□□□□□ -0.12
LIG3-205ENST00000585941 LDB2O43679 373 aa14.29□□□□□ -0.12
LIG3-205ENST00000585941 ZMPSTE24O75844 475 aa14.29□□□□□ -0.12
LIG3-205ENST00000585941 CPA3P15088 417 aa14.29□□□□□ -0.12
LIG3-205ENST00000585941 GABRB3P28472 473 aa14.29□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms