RNA–Protein interactions for RNA: ENST00000585121.5

SS18-225, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-225ENST00000585121 RENBPP51606 427 aa12.52□□□□□ -0.4
SS18-225ENST00000585121 IL10RBQ08334 325 aa12.52□□□□□ -0.4
SS18-225ENST00000585121 DPYSQ14117 519 aa12.52□□□□□ -0.4
SS18-225ENST00000585121 KRT81Q14533 505 aa12.52□□□□□ -0.4
SS18-225ENST00000585121 TMCO4Q5TGY1 634 aa12.52□□□□□ -0.4
SS18-225ENST00000585121 AFMIDQ63HM1 303 aa12.52□□□□□ -0.4
SS18-225ENST00000585121 ERAP2Q6P179 960 aa12.52□□□□□ -0.4
SS18-225ENST00000585121 TMCO3Q6UWJ1 677 aa12.52□□□□□ -0.4
SS18-225ENST00000585121 Q6ZSR6 202 aa12.52□□□□□ -0.4
SS18-225ENST00000585121 CYP4V2Q6ZWL3 525 aaPredicted RBP12.52□□□□□ -0.4
SS18-225ENST00000585121 H2AFVQ71UI9 128 aa12.52□□□□□ -0.4
SS18-225ENST00000585121 ABI3BPQ7Z7G0 1075 aa12.52□□□□□ -0.4
SS18-225ENST00000585121 GALNT15Q8N3T1 639 aa12.52□□□□□ -0.4
SS18-225ENST00000585121 DENND6BQ8NEG7 585 aa12.52□□□□□ -0.4
SS18-225ENST00000585121 ZNF564Q8TBZ8 553 aaPredicted RBP12.52□□□□□ -0.4
SS18-225ENST00000585121 NSMCE1Q8WV22 266 aa12.52□□□□□ -0.4
SS18-225ENST00000585121 IFT43Q96FT9 208 aa12.52□□□□□ -0.4
SS18-225ENST00000585121 EXOC2Q96KP1 924 aa12.52□□□□□ -0.4
SS18-225ENST00000585121 ZNF641Q96N77 438 aaPredicted RBP12.52□□□□□ -0.4
SS18-225ENST00000585121 TUBGCP5Q96RT8 1024 aa12.52□□□□□ -0.4
SS18-225ENST00000585121 C1QTNF2Q9BXJ5 285 aa12.52□□□□□ -0.4
SS18-225ENST00000585121 SUV39H2Q9H5I1 410 aa12.52□□□□□ -0.4
SS18-225ENST00000585121 ATP13A3Q9H7F0 1226 aa12.52□□□□□ -0.4
SS18-225ENST00000585121 PDFQ9HBH1 243 aa12.52□□□□□ -0.4
SS18-225ENST00000585121 CTTNBP2NLQ9P2B4 639 aa12.52□□□□□ -0.4
SS18-225ENST00000585121 MAP1BP46821 2468 aaKnown RBP12.52□□□□□ -0.41
SS18-225ENST00000585121 C1QTNF9BB2RNN3 333 aa12.52□□□□□ -0.41
SS18-225ENST00000585121 AREL1O15033 823 aa12.52□□□□□ -0.41
SS18-225ENST00000585121 INSIG1O15503 277 aa12.52□□□□□ -0.41
SS18-225ENST00000585121 TM7SF2O76062 418 aa12.52□□□□□ -0.41
SS18-225ENST00000585121 PIGNO95427 931 aa12.52□□□□□ -0.41
SS18-225ENST00000585121 C1SP09871 688 aa12.52□□□□□ -0.41
SS18-225ENST00000585121 C1QTNF9P0C862 333 aa12.52□□□□□ -0.41
SS18-225ENST00000585121 RARAP10276 462 aa12.52□□□□□ -0.41
SS18-225ENST00000585121 ALPPL2P10696 532 aa12.52□□□□□ -0.41
SS18-225ENST00000585121 TIMP2P16035 220 aa12.52□□□□□ -0.41
SS18-225ENST00000585121 SERPINA4P29622 427 aa12.52□□□□□ -0.41
SS18-225ENST00000585121 NSUN2Q08J23 767 aaKnown RBP eCLIP12.52□□□□□ -0.41
SS18-225ENST00000585121 BRAT1Q6PJG6 821 aa12.52□□□□□ -0.41
SS18-225ENST00000585121 KYAT3Q6YP21 454 aaKnown RBP12.52□□□□□ -0.41
SS18-225ENST00000585121 GCNT7Q6ZNI0 430 aa12.52□□□□□ -0.41
SS18-225ENST00000585121 POLNQ7Z5Q5 900 aa12.52□□□□□ -0.41
SS18-225ENST00000585121 SRLQ86TD4 932 aa12.52□□□□□ -0.41
SS18-225ENST00000585121 ARHGAP12Q8IWW6 846 aa12.52□□□□□ -0.41
SS18-225ENST00000585121 BBS5Q8N3I7 341 aa12.52□□□□□ -0.41
SS18-225ENST00000585121 GATA6Q92908 595 aa12.52□□□□□ -0.41
SS18-225ENST00000585121 BTBD6Q96KE9 485 aa12.52□□□□□ -0.41
SS18-225ENST00000585121 ZNF599Q96NL3 588 aa12.52□□□□□ -0.41
SS18-225ENST00000585121 UVRAGQ9P2Y5 699 aa12.52□□□□□ -0.41
SS18-225ENST00000585121 SEPT3Q9UH03 358 aa12.52□□□□□ -0.41
SS18-225ENST00000585121 ITM2BQ9Y287 266 aa12.52□□□□□ -0.41
SS18-225ENST00000585121 CACNA1BQ00975 2339 aa12.51□□□□□ -0.41
SS18-225ENST00000585121 NEMP2A6NFY4 417 aa12.51□□□□□ -0.41
SS18-225ENST00000585121 AKR1B10O60218 316 aa12.51□□□□□ -0.41
SS18-225ENST00000585121 MMP20O60882 483 aa12.51□□□□□ -0.41
SS18-225ENST00000585121 SDC3O75056 442 aa12.51□□□□□ -0.41
SS18-225ENST00000585121 AMPD1P23109 780 aa12.51□□□□□ -0.41
SS18-225ENST00000585121 CDH6P55285 790 aa12.51□□□□□ -0.41
SS18-225ENST00000585121 HNRNPKP61978 463 aaKnown RBP eCLIP12.51□□□□□ -0.41
SS18-225ENST00000585121 BCL2L1Q07817 233 aa12.51□□□□□ -0.41
SS18-225ENST00000585121 FGL2Q14314 439 aa12.51□□□□□ -0.41
SS18-225ENST00000585121 ZNF235Q14590 738 aa12.51□□□□□ -0.41
SS18-225ENST00000585121 LBRQ14739 615 aaKnown RBP12.51□□□□□ -0.41
SS18-225ENST00000585121 SLC18A3Q16572 532 aa12.51□□□□□ -0.41
SS18-225ENST00000585121 LRRC73Q5JTD7 316 aa12.51□□□□□ -0.41
SS18-225ENST00000585121 VSTM4Q8IW00 320 aa12.51□□□□□ -0.41
SS18-225ENST00000585121 TSEN2Q8NCE0 465 aaKnown RBP12.51□□□□□ -0.41
SS18-225ENST00000585121 RNF214Q8ND24 703 aa12.51□□□□□ -0.41
SS18-225ENST00000585121 BMFQ96LC9 184 aa12.51□□□□□ -0.41
SS18-225ENST00000585121 CSPG4P5Q96PW8 444 aa12.51□□□□□ -0.41
SS18-225ENST00000585121 DNAJC7Q99615 494 aa12.51□□□□□ -0.41
SS18-225ENST00000585121 PCDH18Q9HCL0 1135 aa12.51□□□□□ -0.41
SS18-225ENST00000585121 DNAJC28Q9NX36 388 aa12.51□□□□□ -0.41
SS18-225ENST00000585121 TOR4AQ9NXH8 423 aa12.51□□□□□ -0.41
SS18-225ENST00000585121 GGT7Q9UJ14 662 aa12.51□□□□□ -0.41
SS18-225ENST00000585121 PCDHGA1Q9Y5H4 931 aa12.51□□□□□ -0.41
SS18-225ENST00000585121 CHD5Q8TDI0 1954 aa12.51□□□□□ -0.41
SS18-225ENST00000585121 SSU72P8A0A1W2PR75 194 aa12.5□□□□□ -0.41
SS18-225ENST00000585121 POM121BA6NF01 834 aa12.5□□□□□ -0.41
SS18-225ENST00000585121 H3BM21 787 aa12.5□□□□□ -0.41
SS18-225ENST00000585121 RAD51BO15315 384 aa12.5□□□□□ -0.41
SS18-225ENST00000585121 DKK1O94907 266 aa12.5□□□□□ -0.41
SS18-225ENST00000585121 TCF4P15884 667 aa12.5□□□□□ -0.41
SS18-225ENST00000585121 DGKAP23743 735 aa12.5□□□□□ -0.41
SS18-225ENST00000585121 HSPA9P38646 679 aaKnown RBP12.5□□□□□ -0.41
SS18-225ENST00000585121 SCNN1BP51168 640 aa12.5□□□□□ -0.41
SS18-225ENST00000585121 THOP1P52888 689 aa12.5□□□□□ -0.41
SS18-225ENST00000585121 POLR2LP62875 67 aaKnown RBP12.5□□□□□ -0.41
SS18-225ENST00000585121 SLC25A11Q02978 314 aaKnown RBP12.5□□□□□ -0.41
SS18-225ENST00000585121 PTK2BQ14289 1009 aa12.5□□□□□ -0.41
SS18-225ENST00000585121 UGP2Q16851 508 aa12.5□□□□□ -0.41
SS18-225ENST00000585121 TMEM52BQ4KMG9 183 aa12.5□□□□□ -0.41
SS18-225ENST00000585121 ARHGAP36Q6ZRI8 547 aa12.5□□□□□ -0.41
SS18-225ENST00000585121 TMPRSS7Q7RTY8 843 aa12.5□□□□□ -0.41
SS18-225ENST00000585121 LRRC49Q8IUZ0 686 aa12.5□□□□□ -0.41
SS18-225ENST00000585121 MAP7D3Q8IWC1 876 aa12.5□□□□□ -0.41
SS18-225ENST00000585121 ATPAF2Q8N5M1 289 aa12.5□□□□□ -0.41
SS18-225ENST00000585121 NPWQ8N729 165 aa12.5□□□□□ -0.41
SS18-225ENST00000585121 KDF1Q8NAX2 398 aaPredicted RBP12.5□□□□□ -0.41
SS18-225ENST00000585121 CCDC42Q96M95 316 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms