RNA–Protein interactions for RNA: ENST00000581021.5

SS18-218, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 588 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-218ENST00000581021 SPOPO43791 374 aa20.34■□□□□ 0.85
SS18-218ENST00000581021 CR2P20023 1033 aa20.34■□□□□ 0.85
SS18-218ENST00000581021 TEAD4Q15561 434 aa20.34■□□□□ 0.85
SS18-218ENST00000581021 SETMARQ53H47 684 aaPredicted RBP20.34■□□□□ 0.85
SS18-218ENST00000581021 FAM182AQ5T1J6 154 aa20.34■□□□□ 0.85
SS18-218ENST00000581021 ZFYVE27Q5T4F4 411 aa20.34■□□□□ 0.85
SS18-218ENST00000581021 SLC9A4Q6AI14 798 aa20.34■□□□□ 0.85
SS18-218ENST00000581021 C11orf63Q6NUN7 778 aa20.34■□□□□ 0.85
SS18-218ENST00000581021 MFSD7Q6UXD7 560 aa20.34■□□□□ 0.85
SS18-218ENST00000581021 KDM7AQ6ZMT4 941 aa20.34■□□□□ 0.85
SS18-218ENST00000581021 PRPF39Q86UA1 669 aaKnown RBP20.34■□□□□ 0.85
SS18-218ENST00000581021 MAP7D3Q8IWC1 876 aa20.34■□□□□ 0.85
SS18-218ENST00000581021 RHOT1Q8IXI2 618 aa20.34■□□□□ 0.85
SS18-218ENST00000581021 RNF25Q96BH1 459 aaPredicted RBP20.34■□□□□ 0.85
SS18-218ENST00000581021 GAREM1Q9H706 876 aa20.34■□□□□ 0.85
SS18-218ENST00000581021 DTLQ9NZJ0 730 aa20.34■□□□□ 0.85
SS18-218ENST00000581021 TPX2Q9ULW0 747 aaKnown RBP20.34■□□□□ 0.85
SS18-218ENST00000581021 TMEM131Q92545 1883 aa20.34■□□□□ 0.85
SS18-218ENST00000581021 TP53BP1Q12888 1972 aaPredicted RBP20.34■□□□□ 0.85
SS18-218ENST00000581021 SHROOM3Q8TF72 1996 aa20.34■□□□□ 0.85
SS18-218ENST00000581021 MED19A0JLT2 244 aaPredicted RBP20.33■□□□□ 0.85
SS18-218ENST00000581021 ZNF487B1APH4 448 aa20.33■□□□□ 0.85
SS18-218ENST00000581021 H0Y8X5 98 aa20.33■□□□□ 0.85
SS18-218ENST00000581021 OPHN1O60890 802 aa20.33■□□□□ 0.85
SS18-218ENST00000581021 PRKCGP05129 697 aa20.33■□□□□ 0.85
SS18-218ENST00000581021 CD38P28907 300 aa20.33■□□□□ 0.85
SS18-218ENST00000581021 MAXP61244 160 aa20.33■□□□□ 0.85
SS18-218ENST00000581021 RAD51Q06609 339 aa20.33■□□□□ 0.85
SS18-218ENST00000581021 NSUN2Q08J23 767 aaKnown RBP eCLIP20.33■□□□□ 0.85
SS18-218ENST00000581021 CCDC15Q0P6D6 951 aa20.33■□□□□ 0.85
SS18-218ENST00000581021 IHHQ14623 411 aa20.33■□□□□ 0.85
SS18-218ENST00000581021 TAZQ16635 292 aa20.33■□□□□ 0.85
SS18-218ENST00000581021 PPM1JQ5JR12 505 aa20.33■□□□□ 0.85
SS18-218ENST00000581021 PRAMEF14Q5SWL7 426 aa20.33■□□□□ 0.85
SS18-218ENST00000581021 PIP4P1Q86T03 277 aa20.33■□□□□ 0.85
SS18-218ENST00000581021 SPATS2Q86XZ4 545 aaKnown RBP20.33■□□□□ 0.85
SS18-218ENST00000581021 KRT35Q92764 455 aa20.33■□□□□ 0.85
SS18-218ENST00000581021 RAB7BQ96AH8 199 aa20.33■□□□□ 0.85
SS18-218ENST00000581021 ECHDC3Q96DC8 303 aa20.33■□□□□ 0.85
SS18-218ENST00000581021 MGME1Q9BQP7 344 aa20.33■□□□□ 0.85
SS18-218ENST00000581021 ANP32EQ9BTT0 268 aa20.33■□□□□ 0.85
SS18-218ENST00000581021 SUV39H2Q9H5I1 410 aa20.33■□□□□ 0.85
SS18-218ENST00000581021 CAAP1Q9H8G2 361 aa20.33■□□□□ 0.85
SS18-218ENST00000581021 TRIM10Q9UDY6 481 aa20.33■□□□□ 0.85
SS18-218ENST00000581021 DMTF1Q9Y222 760 aa20.33■□□□□ 0.85
SS18-218ENST00000581021 IGLON5A6NGN9 336 aa20.32■□□□□ 0.84
SS18-218ENST00000581021 TRAFD1O14545 582 aaPredicted RBP20.32■□□□□ 0.84
SS18-218ENST00000581021 PJA2O43164 708 aa20.32■□□□□ 0.84
SS18-218ENST00000581021 CDKN2BP42772 138 aa20.32■□□□□ 0.84
SS18-218ENST00000581021 SCNN1BP51168 640 aa20.32■□□□□ 0.84
SS18-218ENST00000581021 VAV2P52735 878 aa20.32■□□□□ 0.84
SS18-218ENST00000581021 SEMG2Q02383 582 aa20.32■□□□□ 0.84
SS18-218ENST00000581021 ADCY2Q08462 1091 aa20.32■□□□□ 0.84
SS18-218ENST00000581021 ZNF235Q14590 738 aa20.32■□□□□ 0.84
SS18-218ENST00000581021 LLGL1Q15334 1064 aa20.32■□□□□ 0.84
SS18-218ENST00000581021 KIAA1161Q6NSJ0 714 aa20.32■□□□□ 0.84
SS18-218ENST00000581021 NPNTQ6UXI9 565 aa20.32■□□□□ 0.84
SS18-218ENST00000581021 GCNT7Q6ZNI0 430 aa20.32■□□□□ 0.84
SS18-218ENST00000581021 ADAT2Q7Z6V5 191 aaKnown RBP20.32■□□□□ 0.84
SS18-218ENST00000581021 TTC7BQ86TV6 843 aa20.32■□□□□ 0.84
SS18-218ENST00000581021 VSIG1Q86XK7 387 aa20.32■□□□□ 0.84
SS18-218ENST00000581021 TEX26Q8N6G2 289 aa20.32■□□□□ 0.84
SS18-218ENST00000581021 DEFB124Q8NES8 71 aa20.32■□□□□ 0.84
SS18-218ENST00000581021 MAML1Q92585 1016 aa20.32■□□□□ 0.84
SS18-218ENST00000581021 TUBGCP5Q96RT8 1024 aa20.32■□□□□ 0.84
SS18-218ENST00000581021 TRPM6Q9BX84 2022 aa20.31■□□□□ 0.84
SS18-218ENST00000581021 PRAMEF26H0Y7S4 382 aa20.31■□□□□ 0.84
SS18-218ENST00000581021 PSTPIP1O43586 416 aa20.31■□□□□ 0.84
SS18-218ENST00000581021 KCNK5O95279 499 aa20.31■□□□□ 0.84
SS18-218ENST00000581021 NUDT1P36639 197 aa20.31■□□□□ 0.84
SS18-218ENST00000581021 MMP13P45452 471 aa20.31■□□□□ 0.84
SS18-218ENST00000581021 CLDN2P57739 230 aa20.31■□□□□ 0.84
SS18-218ENST00000581021 NXPH1P58417 271 aa20.31■□□□□ 0.84
SS18-218ENST00000581021 AP1S1P61966 158 aa20.31■□□□□ 0.84
SS18-218ENST00000581021 RPS21P63220 83 aaKnown RBP20.31■□□□□ 0.84
SS18-218ENST00000581021 SHBQ15464 509 aa20.31■□□□□ 0.84
SS18-218ENST00000581021 ZNF423Q2M1K9 1284 aa20.31■□□□□ 0.84
SS18-218ENST00000581021 ERMP1Q7Z2K6 904 aa20.31■□□□□ 0.84
SS18-218ENST00000581021 ZNF641Q96N77 438 aaPredicted RBP20.31■□□□□ 0.84
SS18-218ENST00000581021 CAMK1GQ96NX5 476 aa20.31■□□□□ 0.84
SS18-218ENST00000581021 TSGA13Q96PP4 275 aa20.31■□□□□ 0.84
SS18-218ENST00000581021 KLF6Q99612 283 aaPredicted RBP20.31■□□□□ 0.84
SS18-218ENST00000581021 C1QTNF2Q9BXJ5 285 aa20.31■□□□□ 0.84
SS18-218ENST00000581021 ATP13A3Q9H7F0 1226 aa20.31■□□□□ 0.84
SS18-218ENST00000581021 NOD2Q9HC29 1040 aa20.31■□□□□ 0.84
SS18-218ENST00000581021 PCDH12Q9NPG4 1184 aa20.31■□□□□ 0.84
SS18-218ENST00000581021 LUC7LQ9NQ29 371 aaKnown RBP20.31■□□□□ 0.84
SS18-218ENST00000581021 ANKRD36A6QL64 1941 aa20.31■□□□□ 0.84
SS18-218ENST00000581021 BTNL10A8MVZ5 291 aa20.3■□□□□ 0.84
SS18-218ENST00000581021 UPK3BL1B0FP48 263 aa20.3■□□□□ 0.84
SS18-218ENST00000581021 UPK3BL2E5RIL1 263 aa20.3■□□□□ 0.84
SS18-218ENST00000581021 TLR4O00206 839 aa20.3■□□□□ 0.84
SS18-218ENST00000581021 TSPAN6O43657 245 aa20.3■□□□□ 0.84
SS18-218ENST00000581021 CER1O95813 267 aa20.3■□□□□ 0.84
SS18-218ENST00000581021 KRT10P13645 584 aa20.3■□□□□ 0.84
SS18-218ENST00000581021 C21orf59P57076 290 aa20.3■□□□□ 0.84
SS18-218ENST00000581021 IL9RQ01113 521 aa20.3■□□□□ 0.84
SS18-218ENST00000581021 UGP2Q16851 508 aa20.3■□□□□ 0.84
SS18-218ENST00000581021 MARC1Q5VT66 337 aa20.3■□□□□ 0.84
SS18-218ENST00000581021 PSAPL1Q6NUJ1 521 aa20.3■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms