RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 SSTR1P30872 391 aa25.36■■□□□ 1.65
SHMT1-207ENST00000580002 SLC29A2Q14542 456 aa25.36■■□□□ 1.65
SHMT1-207ENST00000580002 ZNF234Q14588 700 aa25.36■■□□□ 1.65
SHMT1-207ENST00000580002 MYLK3Q32MK0 819 aa25.36■■□□□ 1.65
SHMT1-207ENST00000580002 CARD16Q5EG05 197 aa25.36■■□□□ 1.65
SHMT1-207ENST00000580002 EGFLAMQ63HQ2 1017 aa25.36■■□□□ 1.65
SHMT1-207ENST00000580002 PDCD6IPQ8WUM4 868 aaKnown RBP25.36■■□□□ 1.65
SHMT1-207ENST00000580002 PTPRN2Q92932 1015 aa25.36■■□□□ 1.65
SHMT1-207ENST00000580002 ISG20Q96AZ6 181 aaKnown RBP25.36■■□□□ 1.65
SHMT1-207ENST00000580002 P2RY13Q9BPV8 354 aa25.36■■□□□ 1.65
SHMT1-207ENST00000580002 TDRD1Q9BXT4 1180 aaKnown RBP25.36■■□□□ 1.65
SHMT1-207ENST00000580002 GOLGA6AQ9NYA3 693 aa25.36■■□□□ 1.65
SHMT1-207ENST00000580002 MAD1L1Q9Y6D9 718 aa25.36■■□□□ 1.65
SHMT1-207ENST00000580002 PIAS3Q9Y6X2 628 aa25.36■■□□□ 1.65
SHMT1-207ENST00000580002 A0A0U1RQS6 177 aa25.35■■□□□ 1.65
SHMT1-207ENST00000580002 SHISA7A6NL88 538 aa25.35■■□□□ 1.65
SHMT1-207ENST00000580002 K7EQS6 105 aa25.35■■□□□ 1.65
SHMT1-207ENST00000580002 RIPK2O43353 540 aa25.35■■□□□ 1.65
SHMT1-207ENST00000580002 PIAS1O75925 651 aa25.35■■□□□ 1.65
SHMT1-207ENST00000580002 PIRTP0C851 137 aa25.35■■□□□ 1.65
SHMT1-207ENST00000580002 EIF2DP41214 584 aaKnown RBP25.35■■□□□ 1.65
SHMT1-207ENST00000580002 GRIA2P42262 883 aa25.35■■□□□ 1.65
SHMT1-207ENST00000580002 MSLNQ13421 630 aaPredicted RBP25.35■■□□□ 1.65
SHMT1-207ENST00000580002 PON2Q15165 354 aa25.35■■□□□ 1.65
SHMT1-207ENST00000580002 SLC1A5Q15758 541 aa25.35■■□□□ 1.65
SHMT1-207ENST00000580002 RELL1Q8IUW5 271 aa25.35■■□□□ 1.65
SHMT1-207ENST00000580002 PYROXD1Q8WU10 500 aa25.35■■□□□ 1.65
SHMT1-207ENST00000580002 CFAP36Q96G28 342 aa25.35■■□□□ 1.65
SHMT1-207ENST00000580002 PLA2G4CQ9UP65 541 aa25.35■■□□□ 1.65
SHMT1-207ENST00000580002 TTC4O95801 387 aa25.34■■□□□ 1.65
SHMT1-207ENST00000580002 IGSF6O95976 241 aa25.34■■□□□ 1.65
SHMT1-207ENST00000580002 SHBGP04278 402 aa25.34■■□□□ 1.65
SHMT1-207ENST00000580002 ASLP04424 464 aa25.34■■□□□ 1.65
SHMT1-207ENST00000580002 SRPRAP08240 638 aaKnown RBP25.34■■□□□ 1.65
SHMT1-207ENST00000580002 SLC8A1P32418 973 aa25.34■■□□□ 1.65
SHMT1-207ENST00000580002 CCNHP51946 323 aaPredicted RBP25.34■■□□□ 1.65
SHMT1-207ENST00000580002 SEC13P55735 322 aa25.34■■□□□ 1.65
SHMT1-207ENST00000580002 CDH17Q12864 832 aa25.34■■□□□ 1.65
SHMT1-207ENST00000580002 FNDC3BQ53EP0 1204 aaKnown RBP25.34■■□□□ 1.65
SHMT1-207ENST00000580002 PCDH20Q8N6Y1 951 aaKnown RBP25.34■■□□□ 1.65
SHMT1-207ENST00000580002 CEP44Q9C0F1 390 aa25.34■■□□□ 1.65
SHMT1-207ENST00000580002 PABPC3Q9H361 631 aaKnown RBP25.34■■□□□ 1.65
SHMT1-207ENST00000580002 COL4A2P08572 1712 aa25.34■■□□□ 1.65
SHMT1-207ENST00000580002 CXorf51AA0A1B0GTR3 108 aa25.33■■□□□ 1.65
SHMT1-207ENST00000580002 SDR42E2A6NKP2 422 aa25.33■■□□□ 1.65
SHMT1-207ENST00000580002 EIF3HO15372 352 aaKnown RBP eCLIP25.33■■□□□ 1.65
SHMT1-207ENST00000580002 APODP05090 189 aa25.33■■□□□ 1.65
SHMT1-207ENST00000580002 CD72P21854 359 aa25.33■■□□□ 1.65
SHMT1-207ENST00000580002 WASP42768 502 aa25.33■■□□□ 1.65
SHMT1-207ENST00000580002 SNRPD1P62314 119 aaKnown RBP25.33■■□□□ 1.65
SHMT1-207ENST00000580002 CBLBQ13191 982 aa25.33■■□□□ 1.65
SHMT1-207ENST00000580002 POU6F1Q14863 301 aa25.33■■□□□ 1.65
SHMT1-207ENST00000580002 SMAD1Q15797 465 aaKnown RBP25.33■■□□□ 1.65
SHMT1-207ENST00000580002 LINC00523Q86TU6 105 aa25.33■■□□□ 1.65
SHMT1-207ENST00000580002 ZSWIM9Q86XI8 627 aa25.33■■□□□ 1.65
SHMT1-207ENST00000580002 IFT43Q96FT9 208 aa25.33■■□□□ 1.65
SHMT1-207ENST00000580002 ZNF778Q96MU6 729 aa25.33■■□□□ 1.65
SHMT1-207ENST00000580002 EBNA1BP2Q99848 306 aaKnown RBP25.33■■□□□ 1.65
SHMT1-207ENST00000580002 FRMD8Q9BZ67 464 aaPredicted RBP25.33■■□□□ 1.65
SHMT1-207ENST00000580002 TSPYL1Q9H0U9 437 aa25.33■■□□□ 1.65
SHMT1-207ENST00000580002 ZDHHC6Q9H6R6 413 aa25.33■■□□□ 1.65
SHMT1-207ENST00000580002 ATG2BQ96BY7 2078 aa25.33■■□□□ 1.65
SHMT1-207ENST00000580002 PALM2-AKAP2B1ALY0 433 aaPredicted RBP25.33■■□□□ 1.65
SHMT1-207ENST00000580002 TRAFD1O14545 582 aaPredicted RBP25.33■■□□□ 1.65
SHMT1-207ENST00000580002 IL12RB1P42701 662 aa25.33■■□□□ 1.65
SHMT1-207ENST00000580002 CSNK1DP48730 415 aa25.33■■□□□ 1.65
SHMT1-207ENST00000580002 CASC4Q6P4E1 433 aa25.33■■□□□ 1.65
SHMT1-207ENST00000580002 FEM1CQ96JP0 617 aa25.33■■□□□ 1.65
SHMT1-207ENST00000580002 CHRAC1Q9NRG0 131 aa25.33■■□□□ 1.65
SHMT1-207ENST00000580002 CACNA2D2Q9NY47 1150 aa25.33■■□□□ 1.65
SHMT1-207ENST00000580002 PCDHB9Q9Y5E1 797 aa25.33■■□□□ 1.65
SHMT1-207ENST00000580002 GSRP00390 522 aa25.32■■□□□ 1.64
SHMT1-207ENST00000580002 EGFP01133 1207 aa25.32■■□□□ 1.64
SHMT1-207ENST00000580002 CTSLP07711 333 aa25.32■■□□□ 1.64
SHMT1-207ENST00000580002 CES1P23141 567 aa25.32■■□□□ 1.64
SHMT1-207ENST00000580002 PRKCHP24723 683 aa25.32■■□□□ 1.64
SHMT1-207ENST00000580002 AP1S1P61966 158 aa25.32■■□□□ 1.64
SHMT1-207ENST00000580002 DNAJC21Q5F1R6 531 aaKnown RBP25.32■■□□□ 1.64
SHMT1-207ENST00000580002 TRMT10CQ7L0Y3 403 aaKnown RBP25.32■■□□□ 1.64
SHMT1-207ENST00000580002 HDXQ7Z353 690 aa25.32■■□□□ 1.64
SHMT1-207ENST00000580002 UNC5BQ8IZJ1 945 aa25.32■■□□□ 1.64
SHMT1-207ENST00000580002 LPCAT1Q8NF37 534 aa25.32■■□□□ 1.64
SHMT1-207ENST00000580002 GRIN3AQ8TCU5 1115 aa25.32■■□□□ 1.64
SHMT1-207ENST00000580002 PPP1R2P1Q96PQ5 205 aa25.32■■□□□ 1.64
SHMT1-207ENST00000580002 ARNT2Q9HBZ2 717 aa25.32■■□□□ 1.64
SHMT1-207ENST00000580002 TRPV5Q9NQA5 729 aa25.32■■□□□ 1.64
SHMT1-207ENST00000580002 MAP2K7O14733 419 aa25.31■■□□□ 1.64
SHMT1-207ENST00000580002 TIMM44O43615 452 aa25.31■■□□□ 1.64
SHMT1-207ENST00000580002 NNMTP40261 264 aa25.31■■□□□ 1.64
SHMT1-207ENST00000580002 ST8SIA6P61647 398 aa25.31■■□□□ 1.64
SHMT1-207ENST00000580002 EIF4HQ15056 248 aaKnown RBP25.31■■□□□ 1.64
SHMT1-207ENST00000580002 FSTL4Q6MZW2 842 aa25.31■■□□□ 1.64
SHMT1-207ENST00000580002 UNC5AQ6ZN44 842 aa25.31■■□□□ 1.64
SHMT1-207ENST00000580002 METTL3Q86U44 580 aaKnown RBP25.31■■□□□ 1.64
SHMT1-207ENST00000580002 IQCKQ8N0W5 287 aa25.31■■□□□ 1.64
SHMT1-207ENST00000580002 FCRL3Q96P31 734 aaPredicted RBP25.31■■□□□ 1.64
SHMT1-207ENST00000580002 ZIM3Q96PE6 472 aa25.31■■□□□ 1.64
SHMT1-207ENST00000580002 TMEM245Q9H330 911 aa25.31■■□□□ 1.64
SHMT1-207ENST00000580002 HAUS2Q9NVX0 235 aa25.31■■□□□ 1.64
SHMT1-207ENST00000580002 IL1RAPL1Q9NZN1 696 aa25.31■■□□□ 1.64
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms