RNA–Protein interactions for RNA: ENST00000578519.5

SKA2-204, Transcript of spindle and kinetochore associated complex subunit 2, humanhuman

TSL 3

Gene SKA2, Length 894 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA2-204ENST00000578519 KIRREL3Q8IZU9 778 aa11.23□□□□□ -0.61
SKA2-204ENST00000578519 MICALL1Q8N3F8 863 aa11.23□□□□□ -0.61
SKA2-204ENST00000578519 ARL14EPQ8N8R7 260 aaPredicted RBP11.23□□□□□ -0.61
SKA2-204ENST00000578519 KLHL23Q8NBE8 558 aa11.23□□□□□ -0.61
SKA2-204ENST00000578519 C2CD4AQ8NCU7 369 aaPredicted RBP11.23□□□□□ -0.61
SKA2-204ENST00000578519 TTC8Q8TAM2 541 aa11.23□□□□□ -0.61
SKA2-204ENST00000578519 ARRDC2Q8TBH0 407 aa11.23□□□□□ -0.61
SKA2-204ENST00000578519 ACDQ96AP0 544 aa11.23□□□□□ -0.61
SKA2-204ENST00000578519 VWCEQ96DN2 955 aa11.23□□□□□ -0.61
SKA2-204ENST00000578519 C2orf49Q9BVC5 232 aaPredicted RBP11.23□□□□□ -0.61
SKA2-204ENST00000578519 RNF38Q9H0F5 515 aa11.23□□□□□ -0.61
SKA2-204ENST00000578519 ATXN3LQ9H3M9 355 aa11.23□□□□□ -0.61
SKA2-204ENST00000578519 MFSD1Q9H3U5 465 aa11.23□□□□□ -0.61
SKA2-204ENST00000578519 STN1Q9H668 368 aaKnown RBP11.23□□□□□ -0.61
SKA2-204ENST00000578519 TREX1Q9NSU2 369 aa11.23□□□□□ -0.61
SKA2-204ENST00000578519 FBXO5Q9UKT4 447 aa11.23□□□□□ -0.61
SKA2-204ENST00000578519 SLC39A10Q9ULF5 831 aa11.23□□□□□ -0.61
SKA2-204ENST00000578519 ACOT9Q9Y305 439 aa11.23□□□□□ -0.61
SKA2-204ENST00000578519 CPQQ9Y646 472 aa11.23□□□□□ -0.61
SKA2-204ENST00000578519 SCN5AQ14524 2016 aa11.23□□□□□ -0.61
SKA2-204ENST00000578519 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP11.22□□□□□ -0.61
SKA2-204ENST00000578519 HMX2A2RU54 273 aa11.22□□□□□ -0.61
SKA2-204ENST00000578519 C2orf78A6NCI8 922 aa11.22□□□□□ -0.61
SKA2-204ENST00000578519 GOLGA8CPA6NN73 597 aa11.22□□□□□ -0.61
SKA2-204ENST00000578519 CBX4O00257 560 aa11.22□□□□□ -0.61
SKA2-204ENST00000578519 TLL1O43897 1013 aa11.22□□□□□ -0.61
SKA2-204ENST00000578519 CCDC22O60826 627 aa11.22□□□□□ -0.61
SKA2-204ENST00000578519 XYLBO75191 536 aa11.22□□□□□ -0.61
SKA2-204ENST00000578519 DNAJC8O75937 253 aaPredicted RBP11.22□□□□□ -0.61
SKA2-204ENST00000578519 GLP2RO95838 553 aa11.22□□□□□ -0.61
SKA2-204ENST00000578519 KLKB1P03952 638 aa11.22□□□□□ -0.61
SKA2-204ENST00000578519 ALDOAP04075 364 aaKnown RBP11.22□□□□□ -0.61
SKA2-204ENST00000578519 C2P06681 752 aa11.22□□□□□ -0.61
SKA2-204ENST00000578519 PTPN2P17706 415 aa11.22□□□□□ -0.61
SKA2-204ENST00000578519 CTNNB1P35222 781 aa11.22□□□□□ -0.61
SKA2-204ENST00000578519 PPARGP37231 505 aaPredicted RBP11.22□□□□□ -0.61
SKA2-204ENST00000578519 ARCN1P48444 511 aaKnown RBP11.22□□□□□ -0.61
SKA2-204ENST00000578519 HK2P52789 917 aa11.22□□□□□ -0.61
SKA2-204ENST00000578519 RAB10P61026 200 aa11.22□□□□□ -0.61
SKA2-204ENST00000578519 MAXP61244 160 aa11.22□□□□□ -0.61
SKA2-204ENST00000578519 RPS24P62847 133 aaKnown RBP11.22□□□□□ -0.61
SKA2-204ENST00000578519 OLIG2Q13516 323 aa11.22□□□□□ -0.61
SKA2-204ENST00000578519 FASTKD1Q53R41 847 aaKnown RBP11.22□□□□□ -0.61
SKA2-204ENST00000578519 SIRPB2Q5JXA9 342 aa11.22□□□□□ -0.61
SKA2-204ENST00000578519 FAM182AQ5T1J6 154 aa11.22□□□□□ -0.61
SKA2-204ENST00000578519 KDELC2Q7Z4H8 507 aa11.22□□□□□ -0.61
SKA2-204ENST00000578519 TBC1D1Q86TI0 1168 aaPredicted RBP11.22□□□□□ -0.61
SKA2-204ENST00000578519 FAM217AQ8IXS0 508 aa11.22□□□□□ -0.61
SKA2-204ENST00000578519 UNC5BQ8IZJ1 945 aa11.22□□□□□ -0.61
SKA2-204ENST00000578519 CARNMT1Q8N4J0 409 aa11.22□□□□□ -0.61
SKA2-204ENST00000578519 OR7D4Q8NG98 312 aa11.22□□□□□ -0.61
SKA2-204ENST00000578519 OR6P1Q8NGX9 317 aa11.22□□□□□ -0.61
SKA2-204ENST00000578519 AUTS2Q8WXX7 1259 aa11.22□□□□□ -0.61
SKA2-204ENST00000578519 HERVK_113Q902F9 699 aa11.22□□□□□ -0.61
SKA2-204ENST00000578519 RMDN1Q96DB5 314 aa11.22□□□□□ -0.61
SKA2-204ENST00000578519 CCDC126Q96EE4 140 aa11.22□□□□□ -0.61
SKA2-204ENST00000578519 SCYL1Q96KG9 808 aa11.22□□□□□ -0.61
SKA2-204ENST00000578519 SAMD11Q96NU1 681 aa11.22□□□□□ -0.61
SKA2-204ENST00000578519 AGAP2Q99490 1192 aa11.22□□□□□ -0.61
SKA2-204ENST00000578519 TRIM56Q9BRZ2 755 aaKnown RBP11.22□□□□□ -0.61
SKA2-204ENST00000578519 WWP1Q9H0M0 922 aa11.22□□□□□ -0.61
SKA2-204ENST00000578519 RASSF4Q9H2L5 321 aa11.22□□□□□ -0.61
SKA2-204ENST00000578519 NMRAL1Q9HBL8 299 aa11.22□□□□□ -0.61
SKA2-204ENST00000578519 KCNK4Q9NYG8 393 aa11.22□□□□□ -0.61
SKA2-204ENST00000578519 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP11.22□□□□□ -0.61
SKA2-204ENST00000578519 KIAA1522Q9P206 1035 aaPredicted RBP11.22□□□□□ -0.61
SKA2-204ENST00000578519 VPS28Q9UK41 221 aa11.22□□□□□ -0.61
SKA2-204ENST00000578519 PSAT1Q9Y617 370 aa11.22□□□□□ -0.61
SKA2-204ENST00000578519 FAM95CA0A1B0GW59 222 aa11.21□□□□□ -0.61
SKA2-204ENST00000578519 E2F8A0AVK6 867 aa11.21□□□□□ -0.61
SKA2-204ENST00000578519 MROH6A6NGR9 719 aa11.21□□□□□ -0.61
SKA2-204ENST00000578519 TMEM114B3SHH9 223 aa11.21□□□□□ -0.61
SKA2-204ENST00000578519 H3BNC9 293 aa11.21□□□□□ -0.61
SKA2-204ENST00000578519 ZNF197O14709 1029 aa11.21□□□□□ -0.61
SKA2-204ENST00000578519 RPP40O75818 363 aaKnown RBP11.21□□□□□ -0.61
SKA2-204ENST00000578519 AHSGP02765 367 aa11.21□□□□□ -0.61
SKA2-204ENST00000578519 PROCP04070 461 aa11.21□□□□□ -0.61
SKA2-204ENST00000578519 MMP2P08253 660 aa11.21□□□□□ -0.61
SKA2-204ENST00000578519 HNRNPA1P09651 372 aaKnown RBP eCLIP11.21□□□□□ -0.61
SKA2-204ENST00000578519 MYL2P10916 166 aa11.21□□□□□ -0.61
SKA2-204ENST00000578519 RALBP11234 206 aa11.21□□□□□ -0.61
SKA2-204ENST00000578519 MYL4P12829 197 aa11.21□□□□□ -0.61
SKA2-204ENST00000578519 ITGB8P26012 769 aa11.21□□□□□ -0.61
SKA2-204ENST00000578519 HOXD9P28356 352 aaPredicted RBP11.21□□□□□ -0.61
SKA2-204ENST00000578519 HOXA9P31269 272 aa11.21□□□□□ -0.61
SKA2-204ENST00000578519 SLC26A3P40879 764 aa11.21□□□□□ -0.61
SKA2-204ENST00000578519 SCTRP47872 440 aa11.21□□□□□ -0.61
SKA2-204ENST00000578519 LEPRP48357 1165 aaKnown RBP11.21□□□□□ -0.61
SKA2-204ENST00000578519 SCNN1BP51168 640 aa11.21□□□□□ -0.61
SKA2-204ENST00000578519 LBX1P52954 281 aa11.21□□□□□ -0.61
SKA2-204ENST00000578519 RPL26P61254 145 aaKnown RBP11.21□□□□□ -0.61
SKA2-204ENST00000578519 AP1S1P61966 158 aa11.21□□□□□ -0.61
SKA2-204ENST00000578519 GRM3Q14832 879 aa11.21□□□□□ -0.61
SKA2-204ENST00000578519 TAF1AQ15573 450 aaPredicted RBP11.21□□□□□ -0.61
SKA2-204ENST00000578519 FAM83EQ2M2I3 478 aa11.21□□□□□ -0.61
SKA2-204ENST00000578519 AGAP9Q5VTM2 703 aa11.21□□□□□ -0.61
SKA2-204ENST00000578519 FAM45BPQ6NSW5 357 aa11.21□□□□□ -0.61
SKA2-204ENST00000578519 Q6ZNB5 142 aa11.21□□□□□ -0.61
SKA2-204ENST00000578519 C16orf59Q7L2K0 433 aa11.21□□□□□ -0.61
SKA2-204ENST00000578519 MFN1Q8IWA4 741 aa11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms