RNA–Protein interactions for RNA: ENST00000573936.5

CHD3-216, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 749 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-216ENST00000573936 KCNK5O95279 499 aa11.16□□□□□ -0.62
CHD3-216ENST00000573936 MAP3K6O95382 1288 aa11.16□□□□□ -0.62
CHD3-216ENST00000573936 APOC2P02655 101 aa11.16□□□□□ -0.62
CHD3-216ENST00000573936 PYGMP11217 842 aa11.16□□□□□ -0.62
CHD3-216ENST00000573936 CCNB1P14635 433 aa11.16□□□□□ -0.62
CHD3-216ENST00000573936 MSNP26038 577 aaKnown RBP11.16□□□□□ -0.62
CHD3-216ENST00000573936 SERPINA4P29622 427 aa11.16□□□□□ -0.62
CHD3-216ENST00000573936 HOXD12P35452 270 aa11.16□□□□□ -0.62
CHD3-216ENST00000573936 MPLP40238 635 aa11.16□□□□□ -0.62
CHD3-216ENST00000573936 SCNN1BP51168 640 aa11.16□□□□□ -0.62
CHD3-216ENST00000573936 CCR5P51681 352 aa11.16□□□□□ -0.62
CHD3-216ENST00000573936 SUOXP51687 545 aa11.16□□□□□ -0.62
CHD3-216ENST00000573936 BCL2L1Q07817 233 aa11.16□□□□□ -0.62
CHD3-216ENST00000573936 AP1B1Q10567 949 aa11.16□□□□□ -0.62
CHD3-216ENST00000573936 CNTN1Q12860 1018 aa11.16□□□□□ -0.62
CHD3-216ENST00000573936 COL9A2Q14055 689 aaPredicted RBP11.16□□□□□ -0.62
CHD3-216ENST00000573936 RPS6KA1Q15418 735 aa11.16□□□□□ -0.62
CHD3-216ENST00000573936 POM121L1PQ3SYA9 428 aa11.16□□□□□ -0.62
CHD3-216ENST00000573936 CFAP58Q5T655 872 aa11.16□□□□□ -0.62
CHD3-216ENST00000573936 SEL1L2Q5TEA6 688 aa11.16□□□□□ -0.62
CHD3-216ENST00000573936 MEI1Q5TIA1 1274 aa11.16□□□□□ -0.62
CHD3-216ENST00000573936 KIAA0895LQ68EN5 471 aa11.16□□□□□ -0.62
CHD3-216ENST00000573936 NEK5Q6P3R8 708 aa11.16□□□□□ -0.62
CHD3-216ENST00000573936 FBXL19Q6PCT2 694 aa11.16□□□□□ -0.62
CHD3-216ENST00000573936 NPNTQ6UXI9 565 aa11.16□□□□□ -0.62
CHD3-216ENST00000573936 BBS12Q6ZW61 710 aa11.16□□□□□ -0.62
CHD3-216ENST00000573936 RABEPKQ7Z6M1 372 aa11.16□□□□□ -0.62
CHD3-216ENST00000573936 ZSCAN30Q86W11 494 aa11.16□□□□□ -0.62
CHD3-216ENST00000573936 RGL4Q8IZJ4 473 aa11.16□□□□□ -0.62
CHD3-216ENST00000573936 TTC13Q8NBP0 860 aa11.16□□□□□ -0.62
CHD3-216ENST00000573936 OR6K2Q8NGY2 324 aa11.16□□□□□ -0.62
CHD3-216ENST00000573936 CEP76Q8TAP6 659 aa11.16□□□□□ -0.62
CHD3-216ENST00000573936 ALG3Q92685 438 aa11.16□□□□□ -0.62
CHD3-216ENST00000573936 KLHL32Q96NJ5 620 aa11.16□□□□□ -0.62
CHD3-216ENST00000573936 NUDCD1Q96RS6 583 aa11.16□□□□□ -0.62
CHD3-216ENST00000573936 FERMT1Q9BQL6 677 aa11.16□□□□□ -0.62
CHD3-216ENST00000573936 MGME1Q9BQP7 344 aa11.16□□□□□ -0.62
CHD3-216ENST00000573936 HEMGNQ9BXL5 484 aa11.16□□□□□ -0.62
CHD3-216ENST00000573936 SUV39H2Q9H5I1 410 aa11.16□□□□□ -0.62
CHD3-216ENST00000573936 ATP13A3Q9H7F0 1226 aa11.16□□□□□ -0.62
CHD3-216ENST00000573936 PREBQ9HCU5 417 aa11.16□□□□□ -0.62
CHD3-216ENST00000573936 SCUBE2Q9NQ36 999 aa11.16□□□□□ -0.62
CHD3-216ENST00000573936 RBM22Q9NW64 420 aaKnown RBP eCLIP11.16□□□□□ -0.62
CHD3-216ENST00000573936 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.16□□□□□ -0.62
CHD3-216ENST00000573936 DKK3Q9UBP4 350 aa11.16□□□□□ -0.62
CHD3-216ENST00000573936 SERGEFQ9UGK8 458 aa11.16□□□□□ -0.62
CHD3-216ENST00000573936 SUSD2Q9UGT4 822 aa11.16□□□□□ -0.62
CHD3-216ENST00000573936 RALYQ9UKM9 306 aaKnown RBP11.16□□□□□ -0.62
CHD3-216ENST00000573936 PACSIN2Q9UNF0 486 aaPredicted RBP11.16□□□□□ -0.62
CHD3-216ENST00000573936 IGF2RP11717 2491 aa11.16□□□□□ -0.62
CHD3-216ENST00000573936 TBC1D3DA0A087WVF3 549 aa11.15□□□□□ -0.62
CHD3-216ENST00000573936 TBC1D3IA0A087WXS9 549 aa11.15□□□□□ -0.62
CHD3-216ENST00000573936 TBC1D3EA0A087X179 549 aa11.15□□□□□ -0.62
CHD3-216ENST00000573936 TBC1D3KA0A087X1G2 549 aa11.15□□□□□ -0.62
CHD3-216ENST00000573936 TBC1D3FA6NER0 549 aaPredicted RBP11.15□□□□□ -0.62
CHD3-216ENST00000573936 FAM47DPA6NHR8 397 aa11.15□□□□□ -0.62
CHD3-216ENST00000573936 C16orf96A6NNT2 1141 aa11.15□□□□□ -0.62
CHD3-216ENST00000573936 TBC1D3LB9A6J9 549 aa11.15□□□□□ -0.62
CHD3-216ENST00000573936 AP1G1O43747 822 aa11.15□□□□□ -0.62
CHD3-216ENST00000573936 UGT2B4P06133 528 aa11.15□□□□□ -0.62
CHD3-216ENST00000573936 PROS1P07225 676 aa11.15□□□□□ -0.62
CHD3-216ENST00000573936 TBC1D3HP0C7X1 549 aa11.15□□□□□ -0.62
CHD3-216ENST00000573936 ADRB3P13945 408 aa11.15□□□□□ -0.62
CHD3-216ENST00000573936 GNSP15586 552 aa11.15□□□□□ -0.62
CHD3-216ENST00000573936 XPAP23025 273 aaPredicted RBP11.15□□□□□ -0.62
CHD3-216ENST00000573936 GKP32189 559 aa11.15□□□□□ -0.62
CHD3-216ENST00000573936 NUDT1P36639 197 aa11.15□□□□□ -0.62
CHD3-216ENST00000573936 ADPRHP54922 357 aa11.15□□□□□ -0.62
CHD3-216ENST00000573936 CREB5Q02930 508 aa11.15□□□□□ -0.62
CHD3-216ENST00000573936 ITKQ08881 620 aa11.15□□□□□ -0.62
CHD3-216ENST00000573936 XRCC4Q13426 336 aa11.15□□□□□ -0.62
CHD3-216ENST00000573936 PIP5KL1Q5T9C9 394 aa11.15□□□□□ -0.62
CHD3-216ENST00000573936 AGBL4Q5VU57 503 aa11.15□□□□□ -0.62
CHD3-216ENST00000573936 DCAF12L1Q5VU92 463 aa11.15□□□□□ -0.62
CHD3-216ENST00000573936 TBC1D3GQ6DHY5 549 aa11.15□□□□□ -0.62
CHD3-216ENST00000573936 TBC1D3CQ6IPX1 549 aa11.15□□□□□ -0.62
CHD3-216ENST00000573936 TCEAL6Q6IPX3 200 aa11.15□□□□□ -0.62
CHD3-216ENST00000573936 NCEH1Q6PIU2 408 aa11.15□□□□□ -0.62
CHD3-216ENST00000573936 BRAT1Q6PJG6 821 aa11.15□□□□□ -0.62
CHD3-216ENST00000573936 SYT12Q8IV01 421 aa11.15□□□□□ -0.62
CHD3-216ENST00000573936 SLC41A1Q8IVJ1 513 aa11.15□□□□□ -0.62
CHD3-216ENST00000573936 TBC1D3Q8IZP1 549 aaPredicted RBP11.15□□□□□ -0.62
CHD3-216ENST00000573936 DEFB119Q8N690 84 aa11.15□□□□□ -0.62
CHD3-216ENST00000573936 TFB1MQ8WVM0 346 aaKnown RBP11.15□□□□□ -0.62
CHD3-216ENST00000573936 DNASE2BQ8WZ79 361 aa11.15□□□□□ -0.62
CHD3-216ENST00000573936 PIGKQ92643 395 aa11.15□□□□□ -0.62
CHD3-216ENST00000573936 TCEAL3Q969E4 200 aa11.15□□□□□ -0.62
CHD3-216ENST00000573936 EXOC2Q96KP1 924 aa11.15□□□□□ -0.62
CHD3-216ENST00000573936 HSPA12BQ96MM6 686 aa11.15□□□□□ -0.62
CHD3-216ENST00000573936 OLFM3Q96PB7 478 aa11.15□□□□□ -0.62
CHD3-216ENST00000573936 LGMNQ99538 433 aa11.15□□□□□ -0.62
CHD3-216ENST00000573936 POLR1EQ9GZS1 481 aaKnown RBP11.15□□□□□ -0.62
CHD3-216ENST00000573936 C6orf106Q9H6K1 298 aaPredicted RBP11.15□□□□□ -0.62
CHD3-216ENST00000573936 NT5MQ9NPB1 228 aa11.15□□□□□ -0.62
CHD3-216ENST00000573936 VPS45Q9NRW7 570 aa11.15□□□□□ -0.62
CHD3-216ENST00000573936 ZKSCAN5Q9Y2L8 839 aa11.15□□□□□ -0.62
CHD3-216ENST00000573936 PLXND1Q9Y4D7 1925 aa11.15□□□□□ -0.62
CHD3-216ENST00000573936 USP27XA6NNY8 438 aa11.14□□□□□ -0.63
CHD3-216ENST00000573936 PLK4O00444 970 aa11.14□□□□□ -0.63
CHD3-216ENST00000573936 INSIG1O15503 277 aa11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms