RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 SLCO3A1Q9UIG8 710 aa13.83□□□□□ -0.2
CCDC40-209ENST00000573474 SLC8A2Q9UPR5 921 aa13.83□□□□□ -0.2
CCDC40-209ENST00000573474 RAI2Q9Y5P3 530 aa13.83□□□□□ -0.2
CCDC40-209ENST00000573474 REV3LO60673 3130 aa13.83□□□□□ -0.2
CCDC40-209ENST00000573474 AGPSO00116 658 aa13.82□□□□□ -0.2
CCDC40-209ENST00000573474 OPA1O60313 960 aa13.82□□□□□ -0.2
CCDC40-209ENST00000573474 SHBGP04278 402 aa13.82□□□□□ -0.2
CCDC40-209ENST00000573474 FGF1P05230 155 aa13.82□□□□□ -0.2
CCDC40-209ENST00000573474 ATXN1LP0C7T5 689 aaKnown RBP13.82□□□□□ -0.2
CCDC40-209ENST00000573474 SSTR1P30872 391 aa13.82□□□□□ -0.2
CCDC40-209ENST00000573474 CHRNA4P43681 627 aa13.82□□□□□ -0.2
CCDC40-209ENST00000573474 ST8SIA6P61647 398 aa13.82□□□□□ -0.2
CCDC40-209ENST00000573474 CRADDP78560 199 aa13.82□□□□□ -0.2
CCDC40-209ENST00000573474 KDSRQ06136 332 aa13.82□□□□□ -0.2
CCDC40-209ENST00000573474 SMAD2Q15796 467 aaKnown RBP13.82□□□□□ -0.2
CCDC40-209ENST00000573474 AAK1Q2M2I8 961 aa13.82□□□□□ -0.2
CCDC40-209ENST00000573474 MYLK3Q32MK0 819 aa13.82□□□□□ -0.2
CCDC40-209ENST00000573474 LEXMQ3ZCV2 418 aa13.82□□□□□ -0.2
CCDC40-209ENST00000573474 PCID2Q5JVF3 399 aa13.82□□□□□ -0.2
CCDC40-209ENST00000573474 SIRPB2Q5JXA9 342 aa13.82□□□□□ -0.2
CCDC40-209ENST00000573474 STEAP4Q687X5 459 aa13.82□□□□□ -0.2
CCDC40-209ENST00000573474 UNC5AQ6ZN44 842 aa13.82□□□□□ -0.2
CCDC40-209ENST00000573474 CAPN12Q6ZSI9 719 aa13.82□□□□□ -0.2
CCDC40-209ENST00000573474 NUDT18Q6ZVK8 323 aa13.82□□□□□ -0.2
CCDC40-209ENST00000573474 MTERF4Q7Z6M4 381 aaKnown RBP13.82□□□□□ -0.2
CCDC40-209ENST00000573474 CROCCP2Q86T23 111 aa13.82□□□□□ -0.2
CCDC40-209ENST00000573474 PHTF2Q8N3S3 785 aa13.82□□□□□ -0.2
CCDC40-209ENST00000573474 TERB1Q8NA31 727 aa13.82□□□□□ -0.2
CCDC40-209ENST00000573474 KDM1BQ8NB78 822 aa13.82□□□□□ -0.2
CCDC40-209ENST00000573474 OR2W6PQ8NHA6 318 aa13.82□□□□□ -0.2
CCDC40-209ENST00000573474 CYB5D2Q8WUJ1 264 aa13.82□□□□□ -0.2
CCDC40-209ENST00000573474 SORCS1Q8WY21 1168 aa13.82□□□□□ -0.2
CCDC40-209ENST00000573474 PKNOX2Q96KN3 472 aa13.82□□□□□ -0.2
CCDC40-209ENST00000573474 TDRD1Q9BXT4 1180 aaKnown RBP13.82□□□□□ -0.2
CCDC40-209ENST00000573474 ROPN1BQ9BZX4 212 aaPredicted RBP13.82□□□□□ -0.2
CCDC40-209ENST00000573474 TNKS2Q9H2K2 1166 aa13.82□□□□□ -0.2
CCDC40-209ENST00000573474 ROPN1Q9HAT0 212 aaPredicted RBP13.82□□□□□ -0.2
CCDC40-209ENST00000573474 EVLQ9UI08 416 aaPredicted RBP13.82□□□□□ -0.2
CCDC40-209ENST00000573474 PLA2G4CQ9UP65 541 aa13.82□□□□□ -0.2
CCDC40-209ENST00000573474 CHKBQ9Y259 395 aa13.82□□□□□ -0.2
CCDC40-209ENST00000573474 PCDHGC4Q9Y5F7 938 aa13.82□□□□□ -0.2
CCDC40-209ENST00000573474 FAM237BA0A1B0GVD1 139 aa13.81□□□□□ -0.2
CCDC40-209ENST00000573474 TBC1D3BA6NDS4 549 aa13.81□□□□□ -0.2
CCDC40-209ENST00000573474 PRRT4C9JH25 899 aa13.81□□□□□ -0.2
CCDC40-209ENST00000573474 TCEA3O75764 348 aa13.81□□□□□ -0.2
CCDC40-209ENST00000573474 POP4O95707 220 aaKnown RBP13.81□□□□□ -0.2
CCDC40-209ENST00000573474 POLBP06746 335 aa13.81□□□□□ -0.2
CCDC40-209ENST00000573474 IVLP07476 585 aa13.81□□□□□ -0.2
CCDC40-209ENST00000573474 ALADP13716 330 aa13.81□□□□□ -0.2
CCDC40-209ENST00000573474 ADRA1DP25100 572 aa13.81□□□□□ -0.2
CCDC40-209ENST00000573474 STX2P32856 288 aa13.81□□□□□ -0.2
CCDC40-209ENST00000573474 GRIA2P42262 883 aa13.81□□□□□ -0.2
CCDC40-209ENST00000573474 RAD51Q06609 339 aa13.81□□□□□ -0.2
CCDC40-209ENST00000573474 BCL2L1Q07817 233 aa13.81□□□□□ -0.2
CCDC40-209ENST00000573474 ZNF844Q08AG5 666 aa13.81□□□□□ -0.2
CCDC40-209ENST00000573474 MESP2Q0VG99 397 aa13.81□□□□□ -0.2
CCDC40-209ENST00000573474 TRAF2Q12933 501 aa13.81□□□□□ -0.2
CCDC40-209ENST00000573474 PTPRNQ16849 979 aa13.81□□□□□ -0.2
CCDC40-209ENST00000573474 HABP4Q5JVS0 413 aaKnown RBP13.81□□□□□ -0.2
CCDC40-209ENST00000573474 SPANXN3Q5MJ09 141 aa13.81□□□□□ -0.2
CCDC40-209ENST00000573474 CEP85LQ5SZL2 805 aa13.81□□□□□ -0.2
CCDC40-209ENST00000573474 CYS1Q717R9 158 aa13.81□□□□□ -0.2
CCDC40-209ENST00000573474 RYBPQ8N488 228 aaPredicted RBP13.81□□□□□ -0.2
CCDC40-209ENST00000573474 PPHLN1Q8NEY8 458 aaKnown RBP13.81□□□□□ -0.2
CCDC40-209ENST00000573474 GSDMBQ8TAX9 411 aa13.81□□□□□ -0.2
CCDC40-209ENST00000573474 FBF1Q8TES7 1133 aa13.81□□□□□ -0.2
CCDC40-209ENST00000573474 FRS2Q8WU20 508 aa13.81□□□□□ -0.2
CCDC40-209ENST00000573474 PTCD2Q8WV60 388 aaKnown RBP13.81□□□□□ -0.2
CCDC40-209ENST00000573474 UCMAQ8WVF2 138 aa13.81□□□□□ -0.2
CCDC40-209ENST00000573474 TUBGCP5Q96RT8 1024 aa13.81□□□□□ -0.2
CCDC40-209ENST00000573474 RANBP9Q96S59 729 aa13.81□□□□□ -0.2
CCDC40-209ENST00000573474 KIFC1Q9BW19 673 aa13.81□□□□□ -0.2
CCDC40-209ENST00000573474 ADGRE3Q9BY15 652 aa13.81□□□□□ -0.2
CCDC40-209ENST00000573474 CPEB1Q9BZB8 566 aaKnown RBP13.81□□□□□ -0.2
CCDC40-209ENST00000573474 ATP13A3Q9H7F0 1226 aa13.81□□□□□ -0.2
CCDC40-209ENST00000573474 KCNK12Q9HB15 430 aa13.81□□□□□ -0.2
CCDC40-209ENST00000573474 MRM3Q9HC36 420 aaKnown RBP13.81□□□□□ -0.2
CCDC40-209ENST00000573474 TRPV5Q9NQA5 729 aa13.81□□□□□ -0.2
CCDC40-209ENST00000573474 HECAQ9UBI9 543 aaPredicted RBP13.81□□□□□ -0.2
CCDC40-209ENST00000573474 LIMD1Q9UGP4 676 aa13.81□□□□□ -0.2
CCDC40-209ENST00000573474 SOX13Q9UN79 622 aa13.81□□□□□ -0.2
CCDC40-209ENST00000573474 BRWD1Q9NSI6 2320 aa13.8□□□□□ -0.2
CCDC40-209ENST00000573474 GOLGA6L10A6NI86 522 aa13.8□□□□□ -0.2
CCDC40-209ENST00000573474 TTC34A8MYJ7 566 aa13.8□□□□□ -0.2
CCDC40-209ENST00000573474 SOCS5O75159 536 aa13.8□□□□□ -0.2
CCDC40-209ENST00000573474 USP1O94782 785 aa13.8□□□□□ -0.2
CCDC40-209ENST00000573474 KAT7O95251 611 aa13.8□□□□□ -0.2
CCDC40-209ENST00000573474 PRLP01236 227 aa13.8□□□□□ -0.2
CCDC40-209ENST00000573474 APODP05090 189 aa13.8□□□□□ -0.2
CCDC40-209ENST00000573474 RECQLP46063 649 aaPredicted RBP13.8□□□□□ -0.2
CCDC40-209ENST00000573474 MSLNQ13421 630 aaPredicted RBP13.8□□□□□ -0.2
CCDC40-209ENST00000573474 LAMB3Q13751 1172 aa13.8□□□□□ -0.2
CCDC40-209ENST00000573474 FRG1Q14331 258 aaKnown RBP13.8□□□□□ -0.2
CCDC40-209ENST00000573474 GRM3Q14832 879 aa13.8□□□□□ -0.2
CCDC40-209ENST00000573474 POU6F1Q14863 301 aa13.8□□□□□ -0.2
CCDC40-209ENST00000573474 PUS10Q3MIT2 529 aaKnown RBP13.8□□□□□ -0.2
CCDC40-209ENST00000573474 ANKRD20A4Q4UJ75 823 aa13.8□□□□□ -0.2
CCDC40-209ENST00000573474 ARMC12Q5T9G4 340 aa13.8□□□□□ -0.2
CCDC40-209ENST00000573474 PKN3Q6P5Z2 889 aa13.8□□□□□ -0.2
CCDC40-209ENST00000573474 TMEM135Q86UB9 458 aa13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms