RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 C4orf19Q8IY42 314 aa6.35□□□□□ -1.39
VPS53-212ENST00000572259 DBF4BQ8NFT6 615 aa6.35□□□□□ -1.39
VPS53-212ENST00000572259 OR6Y1Q8NGX8 325 aa6.35□□□□□ -1.39
VPS53-212ENST00000572259 ZNF480Q8WV37 535 aa6.35□□□□□ -1.39
VPS53-212ENST00000572259 KBTBD7Q8WVZ9 684 aa6.35□□□□□ -1.39
VPS53-212ENST00000572259 PRPF18Q99633 342 aaKnown RBP6.35□□□□□ -1.39
VPS53-212ENST00000572259 SLX1AQ9BQ83 275 aa6.35□□□□□ -1.39
VPS53-212ENST00000572259 ACAT2Q9BWD1 397 aa6.35□□□□□ -1.39
VPS53-212ENST00000572259 PABPC3Q9H361 631 aaKnown RBP6.35□□□□□ -1.39
VPS53-212ENST00000572259 ZCCHC4Q9H5U6 513 aa6.35□□□□□ -1.39
VPS53-212ENST00000572259 NOD2Q9HC29 1040 aa6.35□□□□□ -1.39
VPS53-212ENST00000572259 SACM1LQ9NTJ5 587 aa6.35□□□□□ -1.39
VPS53-212ENST00000572259 SEPT11Q9NVA2 429 aaKnown RBP6.35□□□□□ -1.39
VPS53-212ENST00000572259 TBC1D14Q9P2M4 693 aa6.35□□□□□ -1.39
VPS53-212ENST00000572259 GINS2Q9Y248 185 aa6.35□□□□□ -1.39
VPS53-212ENST00000572259 PAXBP1Q9Y5B6 917 aa6.35□□□□□ -1.39
VPS53-212ENST00000572259 GBF1Q92538 1859 aa6.34□□□□□ -1.39
VPS53-212ENST00000572259 KDM3AQ9Y4C1 1321 aa6.34□□□□□ -1.39
VPS53-212ENST00000572259 H3BNC9 293 aa6.34□□□□□ -1.39
VPS53-212ENST00000572259 PES1O00541 588 aaKnown RBP6.34□□□□□ -1.39
VPS53-212ENST00000572259 NRP1O14786 923 aa6.34□□□□□ -1.39
VPS53-212ENST00000572259 CAPN9O14815 690 aa6.34□□□□□ -1.39
VPS53-212ENST00000572259 ASAP2O43150 1006 aa6.34□□□□□ -1.39
VPS53-212ENST00000572259 FMO6PO60774 539 aa6.34□□□□□ -1.39
VPS53-212ENST00000572259 RPS6KA5O75582 802 aa6.34□□□□□ -1.39
VPS53-212ENST00000572259 CSPG5O95196 566 aa6.34□□□□□ -1.39
VPS53-212ENST00000572259 NDST3O95803 873 aa6.34□□□□□ -1.39
VPS53-212ENST00000572259 BMP15O95972 392 aa6.34□□□□□ -1.39
VPS53-212ENST00000572259 PRKCBP05771 671 aa6.34□□□□□ -1.39
VPS53-212ENST00000572259 OR52Z1P0C646 297 aa6.34□□□□□ -1.39
VPS53-212ENST00000572259 STAG3L1P0CL83 205 aa6.34□□□□□ -1.39
VPS53-212ENST00000572259 GHRP10912 638 aa6.34□□□□□ -1.39
VPS53-212ENST00000572259 XRCC6P12956 609 aaKnown RBP eCLIP6.34□□□□□ -1.39
VPS53-212ENST00000572259 GYPEP15421 78 aa6.34□□□□□ -1.39
VPS53-212ENST00000572259 TBXAS1P24557 533 aaPredicted RBP6.34□□□□□ -1.39
VPS53-212ENST00000572259 DPP6P42658 865 aa6.34□□□□□ -1.39
VPS53-212ENST00000572259 ZNF41P51814 821 aaPredicted RBP6.34□□□□□ -1.39
VPS53-212ENST00000572259 CRYBB1P53674 252 aaPredicted RBP6.34□□□□□ -1.39
VPS53-212ENST00000572259 PNLIPRP1P54315 467 aa6.34□□□□□ -1.39
VPS53-212ENST00000572259 WDR5P61964 334 aaKnown RBP6.34□□□□□ -1.39
VPS53-212ENST00000572259 AP2B1P63010 937 aa6.34□□□□□ -1.39
VPS53-212ENST00000572259 HGFACQ04756 655 aa6.34□□□□□ -1.39
VPS53-212ENST00000572259 NCBP1Q09161 790 aaKnown RBP6.34□□□□□ -1.39
VPS53-212ENST00000572259 MGAT2Q10469 447 aa6.34□□□□□ -1.39
VPS53-212ENST00000572259 PDIA5Q14554 519 aa6.34□□□□□ -1.39
VPS53-212ENST00000572259 KCNB1Q14721 858 aa6.34□□□□□ -1.39
VPS53-212ENST00000572259 C2orf76Q3KRA6 126 aa6.34□□□□□ -1.39
VPS53-212ENST00000572259 GAGE13Q4V321 117 aa6.34□□□□□ -1.39
VPS53-212ENST00000572259 XKR9Q5GH70 373 aa6.34□□□□□ -1.39
VPS53-212ENST00000572259 TCP11X2Q5H9J9 407 aa6.34□□□□□ -1.39
VPS53-212ENST00000572259 EARS2Q5JPH6 523 aaKnown RBP6.34□□□□□ -1.39
VPS53-212ENST00000572259 IYDQ6PHW0 289 aa6.34□□□□□ -1.39
VPS53-212ENST00000572259 DCLRE1AQ6PJP8 1040 aa6.34□□□□□ -1.39
VPS53-212ENST00000572259 KDELC1Q6UW63 502 aa6.34□□□□□ -1.39
VPS53-212ENST00000572259 KIAA2013Q8IYS2 634 aa6.34□□□□□ -1.39
VPS53-212ENST00000572259 RNF168Q8IYW5 571 aaPredicted RBP6.34□□□□□ -1.39
VPS53-212ENST00000572259 TBC1D21Q8IYX1 336 aa6.34□□□□□ -1.39
VPS53-212ENST00000572259 ZDHHC14Q8IZN3 488 aa6.34□□□□□ -1.39
VPS53-212ENST00000572259 MYOCDQ8IZQ8 938 aa6.34□□□□□ -1.39
VPS53-212ENST00000572259 GLIS1Q8NBF1 620 aa6.34□□□□□ -1.39
VPS53-212ENST00000572259 ZNF540Q8NDQ6 660 aa6.34□□□□□ -1.39
VPS53-212ENST00000572259 OR5M3Q8NGP4 307 aa6.34□□□□□ -1.39
VPS53-212ENST00000572259 FEZF2Q8TBJ5 459 aa6.34□□□□□ -1.39
VPS53-212ENST00000572259 TCP11Q8WWU5 503 aa6.34□□□□□ -1.39
VPS53-212ENST00000572259 RABGGTAQ92696 567 aa6.34□□□□□ -1.39
VPS53-212ENST00000572259 HAS1Q92839 578 aa6.34□□□□□ -1.39
VPS53-212ENST00000572259 EXOC4Q96A65 974 aa6.34□□□□□ -1.39
VPS53-212ENST00000572259 ZNF653Q96CK0 615 aa6.34□□□□□ -1.39
VPS53-212ENST00000572259 CEP170P1Q96L14 293 aa6.34□□□□□ -1.39
VPS53-212ENST00000572259 SAMD11Q96NU1 681 aa6.34□□□□□ -1.39
VPS53-212ENST00000572259 MTMR9Q96QG7 549 aa6.34□□□□□ -1.39
VPS53-212ENST00000572259 RAD9AQ99638 391 aa6.34□□□□□ -1.39
VPS53-212ENST00000572259 LXNQ9BS40 222 aa6.34□□□□□ -1.39
VPS53-212ENST00000572259 KRTAP4-5Q9BYR2 181 aa6.34□□□□□ -1.39
VPS53-212ENST00000572259 MAGEB5Q9BZ81 275 aa6.34□□□□□ -1.39
VPS53-212ENST00000572259 GCOM2Q9BZD3 368 aaPredicted RBP6.34□□□□□ -1.39
VPS53-212ENST00000572259 TUFT1Q9NNX1 390 aa6.34□□□□□ -1.39
VPS53-212ENST00000572259 PRDM8Q9NQV8 689 aa6.34□□□□□ -1.39
VPS53-212ENST00000572259 KCTD5Q9NXV2 234 aa6.34□□□□□ -1.39
VPS53-212ENST00000572259 RGL1Q9NZL6 768 aa6.34□□□□□ -1.39
VPS53-212ENST00000572259 DKK3Q9UBP4 350 aa6.34□□□□□ -1.39
VPS53-212ENST00000572259 INSL6Q9Y581 213 aa6.34□□□□□ -1.39
VPS53-212ENST00000572259 PCDHB1Q9Y5F3 818 aa6.34□□□□□ -1.39
VPS53-212ENST00000572259 SZT2Q5T011 3432 aa6.34□□□□□ -1.39
VPS53-212ENST00000572259 MYO7AQ13402 2215 aa6.33□□□□□ -1.4
VPS53-212ENST00000572259 DENND3A2RUS2 1198 aa6.33□□□□□ -1.4
VPS53-212ENST00000572259 GRXCR1A8MXD5 290 aa6.33□□□□□ -1.4
VPS53-212ENST00000572259 FCHO1O14526 889 aa6.33□□□□□ -1.4
VPS53-212ENST00000572259 VILLO15195 856 aa6.33□□□□□ -1.4
VPS53-212ENST00000572259 CDC14BO60729 498 aa6.33□□□□□ -1.4
VPS53-212ENST00000572259 GJB5O95377 273 aa6.33□□□□□ -1.4
VPS53-212ENST00000572259 C22orf31O95567 290 aa6.33□□□□□ -1.4
VPS53-212ENST00000572259 APBB3O95704 486 aa6.33□□□□□ -1.4
VPS53-212ENST00000572259 SFTPCP11686 197 aa6.33□□□□□ -1.4
VPS53-212ENST00000572259 LAG3P18627 525 aa6.33□□□□□ -1.4
VPS53-212ENST00000572259 MAPK3P27361 379 aaPredicted RBP6.33□□□□□ -1.4
VPS53-212ENST00000572259 GABRB3P28472 473 aa6.33□□□□□ -1.4
VPS53-212ENST00000572259 YWHABP31946 246 aaKnown RBP6.33□□□□□ -1.4
VPS53-212ENST00000572259 PSMB10P40306 273 aa6.33□□□□□ -1.4
VPS53-212ENST00000572259 PRPHP41219 470 aa6.33□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms