RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 POLR1EQ9GZS1 481 aaKnown RBP9.39□□□□□ -0.91
VPS35-211ENST00000569950 PABPC3Q9H361 631 aaKnown RBP9.39□□□□□ -0.91
VPS35-211ENST00000569950 ZDHHC6Q9H6R6 413 aa9.39□□□□□ -0.91
VPS35-211ENST00000569950 L2HGDHQ9H9P8 463 aa9.39□□□□□ -0.91
VPS35-211ENST00000569950 FBRSQ9HAH7 460 aa9.39□□□□□ -0.91
VPS35-211ENST00000569950 ITM2CQ9NQX7 267 aa9.39□□□□□ -0.91
VPS35-211ENST00000569950 SPATA6Q9NWH7 488 aaPredicted RBP9.39□□□□□ -0.91
VPS35-211ENST00000569950 SEPT10Q9P0V9 454 aa9.39□□□□□ -0.91
VPS35-211ENST00000569950 IL36AQ9UHA7 158 aa9.39□□□□□ -0.91
VPS35-211ENST00000569950 PCYOX1Q9UHG3 505 aa9.39□□□□□ -0.91
VPS35-211ENST00000569950 MBD1Q9UIS9 605 aaPredicted RBP9.39□□□□□ -0.91
VPS35-211ENST00000569950 GGT7Q9UJ14 662 aa9.39□□□□□ -0.91
VPS35-211ENST00000569950 PCDHGC4Q9Y5F7 938 aa9.39□□□□□ -0.91
VPS35-211ENST00000569950 IGHV1OR15-9A0A0B4J2B8 117 aa9.38□□□□□ -0.91
VPS35-211ENST00000569950 CFAP69A5D8W1 941 aa9.38□□□□□ -0.91
VPS35-211ENST00000569950 F5H423 210 aaPredicted RBP9.38□□□□□ -0.91
VPS35-211ENST00000569950 AREL1O15033 823 aa9.38□□□□□ -0.91
VPS35-211ENST00000569950 MTSS1O43312 755 aa9.38□□□□□ -0.91
VPS35-211ENST00000569950 GALR2O43603 387 aaPredicted RBP9.38□□□□□ -0.91
VPS35-211ENST00000569950 BNIP3LO60238 219 aa9.38□□□□□ -0.91
VPS35-211ENST00000569950 OPHN1O60890 802 aa9.38□□□□□ -0.91
VPS35-211ENST00000569950 LILRB5O75023 590 aa9.38□□□□□ -0.91
VPS35-211ENST00000569950 ATXN1LP0C7T5 689 aaKnown RBP9.38□□□□□ -0.91
VPS35-211ENST00000569950 SP9P0CG40 484 aa9.38□□□□□ -0.91
VPS35-211ENST00000569950 TIMP2P16035 220 aa9.38□□□□□ -0.91
VPS35-211ENST00000569950 GM2AP17900 193 aa9.38□□□□□ -0.91
VPS35-211ENST00000569950 ITGB7P26010 798 aa9.38□□□□□ -0.91
VPS35-211ENST00000569950 SLC8A1P32418 973 aa9.38□□□□□ -0.91
VPS35-211ENST00000569950 P2RY2P41231 377 aa9.38□□□□□ -0.91
VPS35-211ENST00000569950 CD86P42081 329 aa9.38□□□□□ -0.91
VPS35-211ENST00000569950 FNTAP49354 379 aa9.38□□□□□ -0.91
VPS35-211ENST00000569950 FNTBP49356 437 aa9.38□□□□□ -0.91
VPS35-211ENST00000569950 TCF15Q12870 199 aa9.38□□□□□ -0.91
VPS35-211ENST00000569950 STARD3Q14849 445 aa9.38□□□□□ -0.91
VPS35-211ENST00000569950 E2F5Q15329 346 aa9.38□□□□□ -0.91
VPS35-211ENST00000569950 ANGPT1Q15389 498 aa9.38□□□□□ -0.91
VPS35-211ENST00000569950 CDKN3Q16667 212 aa9.38□□□□□ -0.91
VPS35-211ENST00000569950 P3H1Q32P28 736 aa9.38□□□□□ -0.91
VPS35-211ENST00000569950 POM121L1PQ3SYA9 428 aa9.38□□□□□ -0.91
VPS35-211ENST00000569950 ZNF776Q68DI1 518 aaPredicted RBP9.38□□□□□ -0.91
VPS35-211ENST00000569950 DENND5AQ6IQ26 1287 aa9.38□□□□□ -0.91
VPS35-211ENST00000569950 SDE2Q6IQ49 451 aa9.38□□□□□ -0.91
VPS35-211ENST00000569950 CCDC137Q6PK04 289 aaKnown RBP9.38□□□□□ -0.91
VPS35-211ENST00000569950 GDPD4Q6W3E5 623 aa9.38□□□□□ -0.91
VPS35-211ENST00000569950 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP9.38□□□□□ -0.91
VPS35-211ENST00000569950 ZBTB44Q8NCP5 570 aa9.38□□□□□ -0.91
VPS35-211ENST00000569950 PIH1D2Q8WWB5 315 aa9.38□□□□□ -0.91
VPS35-211ENST00000569950 RLN3Q8WXF3 142 aa9.38□□□□□ -0.91
VPS35-211ENST00000569950 MAGOHBQ96A72 148 aaKnown RBP9.38□□□□□ -0.91
VPS35-211ENST00000569950 LRIG1Q96JA1 1093 aa9.38□□□□□ -0.91
VPS35-211ENST00000569950 KLHL32Q96NJ5 620 aa9.38□□□□□ -0.91
VPS35-211ENST00000569950 TUBGCP5Q96RT8 1024 aa9.38□□□□□ -0.91
VPS35-211ENST00000569950 ORAI3Q9BRQ5 295 aa9.38□□□□□ -0.91
VPS35-211ENST00000569950 C1QTNF1Q9BXJ1 281 aa9.38□□□□□ -0.91
VPS35-211ENST00000569950 HDAC8Q9BY41 377 aa9.38□□□□□ -0.91
VPS35-211ENST00000569950 TPSD1Q9BZJ3 242 aa9.38□□□□□ -0.91
VPS35-211ENST00000569950 DKK3Q9UBP4 350 aa9.38□□□□□ -0.91
VPS35-211ENST00000569950 RNF14Q9UBS8 474 aa9.38□□□□□ -0.91
VPS35-211ENST00000569950 FBXO4Q9UKT5 387 aa9.38□□□□□ -0.91
VPS35-211ENST00000569950 TRHDEQ9UKU6 1024 aa9.38□□□□□ -0.91
VPS35-211ENST00000569950 ZNF148Q9UQR1 794 aa9.38□□□□□ -0.91
VPS35-211ENST00000569950 PPIL1Q9Y3C6 166 aa9.38□□□□□ -0.91
VPS35-211ENST00000569950 PLXNB3Q9ULL4 1909 aa9.38□□□□□ -0.91
VPS35-211ENST00000569950 EP300Q09472 2414 aaPredicted RBP9.37□□□□□ -0.91
VPS35-211ENST00000569950 CCDC163A0A0D9SF12 145 aa9.37□□□□□ -0.91
VPS35-211ENST00000569950 A0A0U1RQS6 177 aa9.37□□□□□ -0.91
VPS35-211ENST00000569950 LOC285095A0A1B0GVY8 99 aa9.37□□□□□ -0.91
VPS35-211ENST00000569950 TCRBV7S3A2A0A539 114 aa9.37□□□□□ -0.91
VPS35-211ENST00000569950 C16orf96A6NNT2 1141 aa9.37□□□□□ -0.91
VPS35-211ENST00000569950 SYNCRIPO60506 623 aaKnown RBP9.37□□□□□ -0.91
VPS35-211ENST00000569950 SOCS5O75159 536 aa9.37□□□□□ -0.91
VPS35-211ENST00000569950 URI1O94763 535 aaPredicted RBP9.37□□□□□ -0.91
VPS35-211ENST00000569950 PGLSO95336 258 aa9.37□□□□□ -0.91
VPS35-211ENST00000569950 IL1BP01584 269 aa9.37□□□□□ -0.91
VPS35-211ENST00000569950 PRNPP04156 253 aa9.37□□□□□ -0.91
VPS35-211ENST00000569950 C5AR1P21730 350 aa9.37□□□□□ -0.91
VPS35-211ENST00000569950 BCKDHBP21953 392 aa9.37□□□□□ -0.91
VPS35-211ENST00000569950 STIP1P31948 543 aaKnown RBP9.37□□□□□ -0.91
VPS35-211ENST00000569950 ACSL1P33121 698 aa9.37□□□□□ -0.91
VPS35-211ENST00000569950 GRIA1P42261 906 aa9.37□□□□□ -0.91
VPS35-211ENST00000569950 MAGEA6P43360 314 aa9.37□□□□□ -0.91
VPS35-211ENST00000569950 MRPS25P82663 173 aaKnown RBP9.37□□□□□ -0.91
VPS35-211ENST00000569950 ZBTB16Q05516 673 aa9.37□□□□□ -0.91
VPS35-211ENST00000569950 C2orf54Q08AI8 447 aa9.37□□□□□ -0.91
VPS35-211ENST00000569950 RALGDSQ12967 914 aa9.37□□□□□ -0.91
VPS35-211ENST00000569950 SRSF5Q13243 272 aaKnown RBP9.37□□□□□ -0.91
VPS35-211ENST00000569950 SEMA5AQ13591 1074 aa9.37□□□□□ -0.91
VPS35-211ENST00000569950 WHAMMP3Q1A5X7 153 aa9.37□□□□□ -0.91
VPS35-211ENST00000569950 ZNF528Q3MIS6 628 aa9.37□□□□□ -0.91
VPS35-211ENST00000569950 ZNF805Q5CZA5 627 aa9.37□□□□□ -0.91
VPS35-211ENST00000569950 LRRC73Q5JTD7 316 aa9.37□□□□□ -0.91
VPS35-211ENST00000569950 FAXCQ5TGI0 409 aa9.37□□□□□ -0.91
VPS35-211ENST00000569950 RANBP10Q6VN20 620 aa9.37□□□□□ -0.91
VPS35-211ENST00000569950 ZNF534Q76KX8 674 aa9.37□□□□□ -0.91
VPS35-211ENST00000569950 PID1Q7Z2X4 250 aa9.37□□□□□ -0.91
VPS35-211ENST00000569950 WDR5BQ86VZ2 330 aa9.37□□□□□ -0.91
VPS35-211ENST00000569950 CBARPQ8N350 705 aaPredicted RBP9.37□□□□□ -0.91
VPS35-211ENST00000569950 NOA1Q8NC60 698 aaKnown RBP9.37□□□□□ -0.91
VPS35-211ENST00000569950 ATL2Q8NHH9 583 aa9.37□□□□□ -0.91
VPS35-211ENST00000569950 EID2BQ96D98 161 aa9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms