RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-225ENST00000569063 H2AFVQ71UI9 128 aa20.53■□□□□ 0.88
CLK3-225ENST00000569063 KANSL1Q7Z3B3 1105 aa20.53■□□□□ 0.88
CLK3-225ENST00000569063 TP53INP2Q8IXH6 220 aa20.53■□□□□ 0.88
CLK3-225ENST00000569063 PNPLA1Q8N8W4 532 aa20.53■□□□□ 0.88
CLK3-225ENST00000569063 TSEN2Q8NCE0 465 aaKnown RBP20.53■□□□□ 0.88
CLK3-225ENST00000569063 OR13H1Q8NG92 308 aa20.53■□□□□ 0.88
CLK3-225ENST00000569063 FAM71BQ8TC56 605 aa20.53■□□□□ 0.88
CLK3-225ENST00000569063 CTNNBL1Q8WYA6 563 aaPredicted RBP20.53■□□□□ 0.88
CLK3-225ENST00000569063 TSC1Q92574 1164 aa20.53■□□□□ 0.88
CLK3-225ENST00000569063 ZNF641Q96N77 438 aaPredicted RBP20.53■□□□□ 0.88
CLK3-225ENST00000569063 KLF6Q99612 283 aaPredicted RBP20.53■□□□□ 0.88
CLK3-225ENST00000569063 DEF6Q9H4E7 631 aa20.53■□□□□ 0.88
CLK3-225ENST00000569063 SUV39H2Q9H5I1 410 aa20.53■□□□□ 0.88
CLK3-225ENST00000569063 SP110Q9HB58 689 aa20.53■□□□□ 0.88
CLK3-225ENST00000569063 PCDH18Q9HCL0 1135 aa20.53■□□□□ 0.88
CLK3-225ENST00000569063 GPR27Q9NS67 375 aa20.53■□□□□ 0.88
CLK3-225ENST00000569063 KLHL11Q9NVR0 708 aa20.53■□□□□ 0.88
CLK3-225ENST00000569063 IPO11Q9UI26 975 aaKnown RBP20.53■□□□□ 0.88
CLK3-225ENST00000569063 LCMT1Q9UIC8 334 aa20.53■□□□□ 0.88
CLK3-225ENST00000569063 TSPAN11A1L157 253 aa20.52■□□□□ 0.88
CLK3-225ENST00000569063 A6NNZ2 444 aa20.52■□□□□ 0.88
CLK3-225ENST00000569063 RAD51BO15315 384 aa20.52■□□□□ 0.88
CLK3-225ENST00000569063 BUB1BO60566 1050 aaPredicted RBP20.52■□□□□ 0.88
CLK3-225ENST00000569063 MFAP3LO75121 409 aa20.52■□□□□ 0.88
CLK3-225ENST00000569063 PIGNO95427 931 aa20.52■□□□□ 0.88
CLK3-225ENST00000569063 HADHQ16836 314 aaKnown RBP20.52■□□□□ 0.88
CLK3-225ENST00000569063 KYAT3Q6YP21 454 aaKnown RBP20.52■□□□□ 0.88
CLK3-225ENST00000569063 Q6ZSR6 202 aa20.52■□□□□ 0.88
CLK3-225ENST00000569063 SRLQ86TD4 932 aa20.52■□□□□ 0.88
CLK3-225ENST00000569063 DCP2Q8IU60 420 aaKnown RBP20.52■□□□□ 0.88
CLK3-225ENST00000569063 ZNF599Q96NL3 588 aa20.52■□□□□ 0.88
CLK3-225ENST00000569063 PACSIN1Q9BY11 444 aa20.52■□□□□ 0.88
CLK3-225ENST00000569063 ETNK2Q9NVF9 386 aa20.52■□□□□ 0.88
CLK3-225ENST00000569063 CTTNBP2NLQ9P2B4 639 aa20.52■□□□□ 0.88
CLK3-225ENST00000569063 RCOR3Q9P2K3 495 aaPredicted RBP20.52■□□□□ 0.88
CLK3-225ENST00000569063 FTSJ1Q9UET6 329 aa20.52■□□□□ 0.88
CLK3-225ENST00000569063 KLK13Q9UKR3 277 aa20.52■□□□□ 0.88
CLK3-225ENST00000569063 MSRB2Q9Y3D2 182 aa20.52■□□□□ 0.88
CLK3-225ENST00000569063 COL5A1P20908 1838 aaPredicted RBP20.52■□□□□ 0.88
CLK3-225ENST00000569063 POM121BA6NF01 834 aa20.51■□□□□ 0.87
CLK3-225ENST00000569063 AKR1B10O60218 316 aa20.51■□□□□ 0.87
CLK3-225ENST00000569063 PROSCO94903 275 aa20.51■□□□□ 0.87
CLK3-225ENST00000569063 TMEM253P0C7T8 217 aa20.51■□□□□ 0.87
CLK3-225ENST00000569063 IL4RP24394 825 aa20.51■□□□□ 0.87
CLK3-225ENST00000569063 RGRP47804 291 aa20.51■□□□□ 0.87
CLK3-225ENST00000569063 ADKP55263 362 aaKnown RBP20.51■□□□□ 0.87
CLK3-225ENST00000569063 SLC22A18ASQ8N1D0 253 aa20.51■□□□□ 0.87
CLK3-225ENST00000569063 DENND6BQ8NEG7 585 aa20.51■□□□□ 0.87
CLK3-225ENST00000569063 IFT43Q96FT9 208 aa20.51■□□□□ 0.87
CLK3-225ENST00000569063 PSKH2Q96QS6 385 aa20.51■□□□□ 0.87
CLK3-225ENST00000569063 CHP1Q99653 195 aa20.51■□□□□ 0.87
CLK3-225ENST00000569063 CINPQ9BW66 212 aaPredicted RBP20.51■□□□□ 0.87
CLK3-225ENST00000569063 TMEM121BQ9BXQ6 578 aaPredicted RBP20.51■□□□□ 0.87
CLK3-225ENST00000569063 CALN1Q9BXU9 219 aa20.51■□□□□ 0.87
CLK3-225ENST00000569063 SPEGQ15772 3267 aa20.51■□□□□ 0.87
CLK3-225ENST00000569063 CABIN1Q9Y6J0 2220 aa20.51■□□□□ 0.87
CLK3-225ENST00000569063 TRPM6Q9BX84 2022 aa20.51■□□□□ 0.87
CLK3-225ENST00000569063 FPGTO14772 594 aa20.5■□□□□ 0.87
CLK3-225ENST00000569063 ITIH2P19823 946 aa20.5■□□□□ 0.87
CLK3-225ENST00000569063 SSR1P43307 286 aaKnown RBP20.5■□□□□ 0.87
CLK3-225ENST00000569063 ARSEP51690 589 aa20.5■□□□□ 0.87
CLK3-225ENST00000569063 CDH6P55285 790 aa20.5■□□□□ 0.87
CLK3-225ENST00000569063 ELP6Q0PNE2 266 aa20.5■□□□□ 0.87
CLK3-225ENST00000569063 KRT81Q14533 505 aa20.5■□□□□ 0.87
CLK3-225ENST00000569063 UGP2Q16851 508 aa20.5■□□□□ 0.87
CLK3-225ENST00000569063 TMEM52BQ4KMG9 183 aa20.5■□□□□ 0.87
CLK3-225ENST00000569063 LRRC73Q5JTD7 316 aa20.5■□□□□ 0.87
CLK3-225ENST00000569063 BRAT1Q6PJG6 821 aa20.5■□□□□ 0.87
CLK3-225ENST00000569063 SARM1Q6SZW1 724 aa20.5■□□□□ 0.87
CLK3-225ENST00000569063 UNQ6494/PRO21346Q6UXR6 183 aa20.5■□□□□ 0.87
CLK3-225ENST00000569063 CAMK1DQ8IU85 385 aa20.5■□□□□ 0.87
CLK3-225ENST00000569063 EID2Q8N6I1 236 aa20.5■□□□□ 0.87
CLK3-225ENST00000569063 GATA6Q92908 595 aa20.5■□□□□ 0.87
CLK3-225ENST00000569063 CENPTQ96BT3 561 aa20.5■□□□□ 0.87
CLK3-225ENST00000569063 ATP13A3Q9H7F0 1226 aa20.5■□□□□ 0.87
CLK3-225ENST00000569063 NHEJ1Q9H9Q4 299 aaPredicted RBP20.5■□□□□ 0.87
CLK3-225ENST00000569063 SEPT3Q9UH03 358 aa20.5■□□□□ 0.87
CLK3-225ENST00000569063 C1QTNF9BB2RNN3 333 aa20.49■□□□□ 0.87
CLK3-225ENST00000569063 MAFKO60675 156 aa20.49■□□□□ 0.87
CLK3-225ENST00000569063 MMP20O60882 483 aa20.49■□□□□ 0.87
CLK3-225ENST00000569063 LDOC1O95751 146 aaPredicted RBP20.49■□□□□ 0.87
CLK3-225ENST00000569063 PEX11BO96011 259 aa20.49■□□□□ 0.87
CLK3-225ENST00000569063 C1QTNF9P0C862 333 aa20.49■□□□□ 0.87
CLK3-225ENST00000569063 XPAP23025 273 aaPredicted RBP20.49■□□□□ 0.87
CLK3-225ENST00000569063 SERPINB6P35237 376 aa20.49■□□□□ 0.87
CLK3-225ENST00000569063 RABIFP47224 123 aa20.49■□□□□ 0.87
CLK3-225ENST00000569063 RENBPP51606 427 aa20.49■□□□□ 0.87
CLK3-225ENST00000569063 SLC10A7Q0GE19 358 aa20.49■□□□□ 0.87
CLK3-225ENST00000569063 TBX2Q13207 712 aaPredicted RBP20.49■□□□□ 0.87
CLK3-225ENST00000569063 LBRQ14739 615 aaKnown RBP20.49■□□□□ 0.87
CLK3-225ENST00000569063 TMCO4Q5TGY1 634 aa20.49■□□□□ 0.87
CLK3-225ENST00000569063 PTAR1Q7Z6K3 402 aaPredicted RBP20.49■□□□□ 0.87
CLK3-225ENST00000569063 CNGA4Q8IV77 575 aa20.49■□□□□ 0.87
CLK3-225ENST00000569063 CXorf40AQ8TE69 158 aa20.49■□□□□ 0.87
CLK3-225ENST00000569063 CCDC42Q96M95 316 aa20.49■□□□□ 0.87
CLK3-225ENST00000569063 SPTY2D1-AS1A0A0U1RR47 76 aa20.48■□□□□ 0.87
CLK3-225ENST00000569063 GOLGA8CPA6NN73 597 aa20.48■□□□□ 0.87
CLK3-225ENST00000569063 MUSKO15146 869 aa20.48■□□□□ 0.87
CLK3-225ENST00000569063 TM7SF2O76062 418 aa20.48■□□□□ 0.87
CLK3-225ENST00000569063 PROS1P07225 676 aa20.48■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms