RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 DOPEY2Q9Y3R5 2298 aa14.11□□□□□ -0.15
CLN3-235ENST00000568497 EDDM13A0A1B0GTR0 161 aa14.11□□□□□ -0.15
CLN3-235ENST00000568497 DFNA5O60443 496 aa14.11□□□□□ -0.15
CLN3-235ENST00000568497 FSBPO95073 299 aa14.11□□□□□ -0.15
CLN3-235ENST00000568497 IL1BP01584 269 aa14.11□□□□□ -0.15
CLN3-235ENST00000568497 COMTP21964 271 aa14.11□□□□□ -0.15
CLN3-235ENST00000568497 ACADVLP49748 655 aa14.11□□□□□ -0.15
CLN3-235ENST00000568497 ARSEP51690 589 aa14.11□□□□□ -0.15
CLN3-235ENST00000568497 CST6Q15828 149 aa14.11□□□□□ -0.15
CLN3-235ENST00000568497 PRAMEF14Q5SWL7 426 aa14.11□□□□□ -0.15
CLN3-235ENST00000568497 C22orf39Q6P5X5 142 aa14.11□□□□□ -0.15
CLN3-235ENST00000568497 FBXL19Q6PCT2 694 aa14.11□□□□□ -0.15
CLN3-235ENST00000568497 DPY19L3Q6ZPD9 716 aa14.11□□□□□ -0.15
CLN3-235ENST00000568497 TMTC1Q8IUR5 882 aa14.11□□□□□ -0.15
CLN3-235ENST00000568497 RYBPQ8N488 228 aaPredicted RBP14.11□□□□□ -0.15
CLN3-235ENST00000568497 ARRDC3Q96B67 414 aa14.11□□□□□ -0.15
CLN3-235ENST00000568497 RNF25Q96BH1 459 aaPredicted RBP14.11□□□□□ -0.15
CLN3-235ENST00000568497 LRRC19Q9H756 370 aa14.11□□□□□ -0.15
CLN3-235ENST00000568497 CAAP1Q9H8G2 361 aa14.11□□□□□ -0.15
CLN3-235ENST00000568497 UVRAGQ9P2Y5 699 aa14.11□□□□□ -0.15
CLN3-235ENST00000568497 SUN2Q9UH99 717 aa14.11□□□□□ -0.15
CLN3-235ENST00000568497 CLCA2Q9UQC9 943 aa14.11□□□□□ -0.15
CLN3-235ENST00000568497 EIF3CLB5ME19 914 aaKnown RBP14.1□□□□□ -0.15
CLN3-235ENST00000568497 H3BRJ5 948 aa14.1□□□□□ -0.15
CLN3-235ENST00000568497 ATP9BO43861 1147 aa14.1□□□□□ -0.15
CLN3-235ENST00000568497 RNASEH2AO75792 299 aaKnown RBP14.1□□□□□ -0.15
CLN3-235ENST00000568497 LCA5LO95447 670 aa14.1□□□□□ -0.15
CLN3-235ENST00000568497 DESP17661 470 aa14.1□□□□□ -0.15
CLN3-235ENST00000568497 ITIH2P19823 946 aa14.1□□□□□ -0.15
CLN3-235ENST00000568497 SLC8A1P32418 973 aa14.1□□□□□ -0.15
CLN3-235ENST00000568497 CYLC1P35663 651 aaPredicted RBP14.1□□□□□ -0.15
CLN3-235ENST00000568497 CTSKP43235 329 aa14.1□□□□□ -0.15
CLN3-235ENST00000568497 RGRP47804 291 aa14.1□□□□□ -0.15
CLN3-235ENST00000568497 MAPKAPK2P49137 400 aa14.1□□□□□ -0.15
CLN3-235ENST00000568497 SERPINH1P50454 418 aaKnown RBP14.1□□□□□ -0.15
CLN3-235ENST00000568497 KRT83P78385 493 aa14.1□□□□□ -0.15
CLN3-235ENST00000568497 MTA1Q13330 715 aa14.1□□□□□ -0.15
CLN3-235ENST00000568497 SLC12A1Q13621 1099 aa14.1□□□□□ -0.15
CLN3-235ENST00000568497 DPYSL3Q14195 570 aa14.1□□□□□ -0.15
CLN3-235ENST00000568497 CYTH1Q15438 398 aa14.1□□□□□ -0.15
CLN3-235ENST00000568497 SPA17Q15506 151 aa14.1□□□□□ -0.15
CLN3-235ENST00000568497 DPYSL2Q16555 572 aa14.1□□□□□ -0.15
CLN3-235ENST00000568497 ARSIQ5FYB1 569 aa14.1□□□□□ -0.15
CLN3-235ENST00000568497 C6orf132Q5T0Z8 1188 aa14.1□□□□□ -0.15
CLN3-235ENST00000568497 ZNF776Q68DI1 518 aaPredicted RBP14.1□□□□□ -0.15
CLN3-235ENST00000568497 NPNTQ6UXI9 565 aa14.1□□□□□ -0.15
CLN3-235ENST00000568497 KDM7AQ6ZMT4 941 aa14.1□□□□□ -0.15
CLN3-235ENST00000568497 CACTIN-AS1Q8N1I8 211 aa14.1□□□□□ -0.15
CLN3-235ENST00000568497 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP14.1□□□□□ -0.15
CLN3-235ENST00000568497 EID2Q8N6I1 236 aa14.1□□□□□ -0.15
CLN3-235ENST00000568497 ZNF557Q8N988 423 aaPredicted RBP14.1□□□□□ -0.15
CLN3-235ENST00000568497 OR2A12Q8NGT7 310 aa14.1□□□□□ -0.15
CLN3-235ENST00000568497 PCDH19Q8TAB3 1148 aa14.1□□□□□ -0.15
CLN3-235ENST00000568497 TSC1Q92574 1164 aa14.1□□□□□ -0.15
CLN3-235ENST00000568497 TTC9Q92623 222 aa14.1□□□□□ -0.15
CLN3-235ENST00000568497 NSMCE3Q96MG7 304 aa14.1□□□□□ -0.15
CLN3-235ENST00000568497 ZNF830Q96NB3 372 aaPredicted RBP14.1□□□□□ -0.15
CLN3-235ENST00000568497 EIF3CQ99613 913 aaKnown RBP14.1□□□□□ -0.15
CLN3-235ENST00000568497 C2orf49Q9BVC5 232 aaPredicted RBP14.1□□□□□ -0.15
CLN3-235ENST00000568497 CALN1Q9BXU9 219 aa14.1□□□□□ -0.15
CLN3-235ENST00000568497 RSPH9Q9H1X1 276 aaPredicted RBP14.1□□□□□ -0.15
CLN3-235ENST00000568497 NEUROG2Q9H2A3 272 aa14.1□□□□□ -0.15
CLN3-235ENST00000568497 CATSPERBQ9H7T0 1116 aa14.1□□□□□ -0.15
CLN3-235ENST00000568497 FBXL12Q9NXK8 326 aa14.1□□□□□ -0.15
CLN3-235ENST00000568497 A0A1B0GTQ1 180 aa14.09□□□□□ -0.15
CLN3-235ENST00000568497 WASH4PA8MWX3 477 aa14.09□□□□□ -0.15
CLN3-235ENST00000568497 KDELR3O43731 214 aa14.09□□□□□ -0.15
CLN3-235ENST00000568497 MFSD11O43934 449 aa14.09□□□□□ -0.15
CLN3-235ENST00000568497 TMCC1O94876 653 aa14.09□□□□□ -0.15
CLN3-235ENST00000568497 KRT1P04264 644 aa14.09□□□□□ -0.15
CLN3-235ENST00000568497 PRKCGP05129 697 aa14.09□□□□□ -0.15
CLN3-235ENST00000568497 SULT2A1Q06520 285 aa14.09□□□□□ -0.15
CLN3-235ENST00000568497 NFATC3Q12968 1075 aa14.09□□□□□ -0.15
CLN3-235ENST00000568497 E2F5Q15329 346 aa14.09□□□□□ -0.15
CLN3-235ENST00000568497 AADACL2Q6P093 401 aa14.09□□□□□ -0.15
CLN3-235ENST00000568497 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP14.09□□□□□ -0.15
CLN3-235ENST00000568497 PQLC3Q8N755 202 aa14.09□□□□□ -0.15
CLN3-235ENST00000568497 KCTD6Q8NC69 237 aa14.09□□□□□ -0.15
CLN3-235ENST00000568497 KCNE4Q8WWG9 221 aa14.09□□□□□ -0.15
CLN3-235ENST00000568497 KRT35Q92764 455 aa14.09□□□□□ -0.15
CLN3-235ENST00000568497 KLK6Q92876 244 aa14.09□□□□□ -0.15
CLN3-235ENST00000568497 VOPP1Q96AW1 172 aa14.09□□□□□ -0.15
CLN3-235ENST00000568497 BIRC7Q96CA5 298 aa14.09□□□□□ -0.15
CLN3-235ENST00000568497 PABPC3Q9H361 631 aaKnown RBP14.09□□□□□ -0.15
CLN3-235ENST00000568497 HS3ST2Q9Y278 367 aa14.09□□□□□ -0.15
CLN3-235ENST00000568497 USP9XQ93008 2570 aaPredicted RBP14.09□□□□□ -0.15
CLN3-235ENST00000568497 COL12A1Q99715 3063 aa14.08□□□□□ -0.16
CLN3-235ENST00000568497 MACROD2A1Z1Q3 448 aa14.08□□□□□ -0.16
CLN3-235ENST00000568497 LRRD1A4D1F6 860 aa14.08□□□□□ -0.16
CLN3-235ENST00000568497 GOLGA6L3A6NEY3 463 aa14.08□□□□□ -0.16
CLN3-235ENST00000568497 MUSKO15146 869 aa14.08□□□□□ -0.16
CLN3-235ENST00000568497 KLK10O43240 276 aa14.08□□□□□ -0.16
CLN3-235ENST00000568497 MTA2O94776 668 aa14.08□□□□□ -0.16
CLN3-235ENST00000568497 SEMA4FO95754 770 aa14.08□□□□□ -0.16
CLN3-235ENST00000568497 DNTTP04053 509 aa14.08□□□□□ -0.16
CLN3-235ENST00000568497 CD27P26842 260 aa14.08□□□□□ -0.16
CLN3-235ENST00000568497 DRD3P35462 400 aa14.08□□□□□ -0.16
CLN3-235ENST00000568497 NNMTP40261 264 aa14.08□□□□□ -0.16
CLN3-235ENST00000568497 NAP1L1P55209 391 aaKnown RBP14.08□□□□□ -0.16
CLN3-235ENST00000568497 DYNLT1P63172 113 aa14.08□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms