RNA–Protein interactions for RNA: ENST00000568239.1

SMG1-215, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 1 (best)

Gene SMG1, Length 2,978 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-215ENST00000568239 CACNA2D3Q8IZS8 1091 aa7.14□□□□□ -1.27
SMG1-215ENST00000568239 APCDD1Q8J025 514 aa7.14□□□□□ -1.27
SMG1-215ENST00000568239 ARMC2Q8NEN0 867 aa7.14□□□□□ -1.27
SMG1-215ENST00000568239 OR6K2Q8NGY2 324 aa7.14□□□□□ -1.27
SMG1-215ENST00000568239 MGME1Q9BQP7 344 aa7.14□□□□□ -1.27
SMG1-215ENST00000568239 ACE2Q9BYF1 805 aaPredicted RBP7.14□□□□□ -1.27
SMG1-215ENST00000568239 PITPNM3Q9BZ71 974 aa7.14□□□□□ -1.27
SMG1-215ENST00000568239 CCDC134Q9H6E4 229 aa7.14□□□□□ -1.27
SMG1-215ENST00000568239 RETREG1Q9H6L5 497 aa7.14□□□□□ -1.27
SMG1-215ENST00000568239 CAB39LQ9H9S4 337 aa7.14□□□□□ -1.27
SMG1-215ENST00000568239 SSU72Q9NP77 194 aaKnown RBP7.14□□□□□ -1.27
SMG1-215ENST00000568239 SLCO1B3Q9NPD5 702 aa7.14□□□□□ -1.27
SMG1-215ENST00000568239 VPS51Q9UID3 782 aa7.14□□□□□ -1.27
SMG1-215ENST00000568239 ZNF510Q9Y2H8 683 aa7.14□□□□□ -1.27
SMG1-215ENST00000568239 BPTFQ12830 3046 aa7.13□□□□□ -1.27
SMG1-215ENST00000568239 ANKRD65E5RJM6 399 aa7.13□□□□□ -1.27
SMG1-215ENST00000568239 K7ERQ8 282 aa7.13□□□□□ -1.27
SMG1-215ENST00000568239 HGSO14964 777 aaPredicted RBP7.13□□□□□ -1.27
SMG1-215ENST00000568239 INSIG1O15503 277 aa7.13□□□□□ -1.27
SMG1-215ENST00000568239 RB1P06400 928 aa7.13□□□□□ -1.27
SMG1-215ENST00000568239 PGGT1BP53609 377 aa7.13□□□□□ -1.27
SMG1-215ENST00000568239 SLC18A1P54219 525 aa7.13□□□□□ -1.27
SMG1-215ENST00000568239 PRAMEP78395 509 aa7.13□□□□□ -1.27
SMG1-215ENST00000568239 NAB1Q13506 487 aa7.13□□□□□ -1.27
SMG1-215ENST00000568239 PTPRCAPQ14761 206 aa7.13□□□□□ -1.27
SMG1-215ENST00000568239 CYTH1Q15438 398 aa7.13□□□□□ -1.27
SMG1-215ENST00000568239 MPPE1Q53F39 396 aa7.13□□□□□ -1.27
SMG1-215ENST00000568239 ZNF470Q6ECI4 717 aa7.13□□□□□ -1.27
SMG1-215ENST00000568239 ADGRD2Q7Z7M1 963 aa7.13□□□□□ -1.27
SMG1-215ENST00000568239 KLHDC8BQ8IXV7 354 aa7.13□□□□□ -1.27
SMG1-215ENST00000568239 DCLK2Q8N568 766 aa7.13□□□□□ -1.27
SMG1-215ENST00000568239 PNPLA1Q8N8W4 532 aa7.13□□□□□ -1.27
SMG1-215ENST00000568239 LPCAT1Q8NF37 534 aa7.13□□□□□ -1.27
SMG1-215ENST00000568239 ST13P5Q8NFI4 369 aaPredicted RBP7.13□□□□□ -1.27
SMG1-215ENST00000568239 SEC16BQ96JE7 1060 aa7.13□□□□□ -1.27
SMG1-215ENST00000568239 RBBP8Q99708 897 aa7.13□□□□□ -1.27
SMG1-215ENST00000568239 TASP1Q9H6P5 420 aa7.13□□□□□ -1.27
SMG1-215ENST00000568239 TDP1Q9NUW8 608 aa7.13□□□□□ -1.27
SMG1-215ENST00000568239 SLC39A10Q9ULF5 831 aa7.13□□□□□ -1.27
SMG1-215ENST00000568239 FNDC3AQ9Y2H6 1198 aaKnown RBP7.13□□□□□ -1.27
SMG1-215ENST00000568239 MTO1Q9Y2Z2 717 aaKnown RBP7.13□□□□□ -1.27
SMG1-215ENST00000568239 KCTD3Q9Y597 815 aa7.13□□□□□ -1.27
SMG1-215ENST00000568239 ANKRD36A6QL64 1941 aa7.13□□□□□ -1.27
SMG1-215ENST00000568239 NEDD8-MDP1E9PL57 170 aa7.13□□□□□ -1.27
SMG1-215ENST00000568239 C5orf67F2Z3F1 127 aa7.13□□□□□ -1.27
SMG1-215ENST00000568239 TAC1P20366 129 aa7.13□□□□□ -1.27
SMG1-215ENST00000568239 MAGEA10P43363 369 aaPredicted RBP7.13□□□□□ -1.27
SMG1-215ENST00000568239 MPP1Q00013 466 aa7.13□□□□□ -1.27
SMG1-215ENST00000568239 IFT88Q13099 833 aa7.13□□□□□ -1.27
SMG1-215ENST00000568239 RFTN1Q14699 578 aaPredicted RBP7.13□□□□□ -1.27
SMG1-215ENST00000568239 DLG2Q15700 870 aa7.13□□□□□ -1.27
SMG1-215ENST00000568239 PDK4Q16654 411 aa7.13□□□□□ -1.27
SMG1-215ENST00000568239 ATXN7L2Q5T6C5 722 aaPredicted RBP7.13□□□□□ -1.27
SMG1-215ENST00000568239 C16orf46Q6P387 395 aa7.13□□□□□ -1.27
SMG1-215ENST00000568239 SH2D5Q6ZV89 423 aa7.13□□□□□ -1.27
SMG1-215ENST00000568239 RYBPQ8N488 228 aaPredicted RBP7.13□□□□□ -1.27
SMG1-215ENST00000568239 ANKS4BQ8N8V4 417 aa7.13□□□□□ -1.27
SMG1-215ENST00000568239 USP13Q92995 863 aaPredicted RBP7.13□□□□□ -1.27
SMG1-215ENST00000568239 VPS39Q96JC1 886 aa7.13□□□□□ -1.27
SMG1-215ENST00000568239 RPL10LQ96L21 214 aaKnown RBP7.13□□□□□ -1.27
SMG1-215ENST00000568239 MECRQ9BV79 373 aa7.13□□□□□ -1.27
SMG1-215ENST00000568239 C2orf49Q9BVC5 232 aaPredicted RBP7.13□□□□□ -1.27
SMG1-215ENST00000568239 APOL5Q9BWW9 433 aa7.13□□□□□ -1.27
SMG1-215ENST00000568239 PRKD2Q9BZL6 878 aa7.13□□□□□ -1.27
SMG1-215ENST00000568239 TLE6Q9H808 572 aa7.13□□□□□ -1.27
SMG1-215ENST00000568239 ARNT2Q9HBZ2 717 aa7.13□□□□□ -1.27
SMG1-215ENST00000568239 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP7.13□□□□□ -1.27
SMG1-215ENST00000568239 ARHGAP26Q9UNA1 814 aa7.13□□□□□ -1.27
SMG1-215ENST00000568239 MRPS23Q9Y3D9 190 aaKnown RBP7.13□□□□□ -1.27
SMG1-215ENST00000568239 ARL5AQ9Y689 179 aa7.13□□□□□ -1.27
SMG1-215ENST00000568239 NOTCH4Q99466 2003 aa7.12□□□□□ -1.27
SMG1-215ENST00000568239 LOC285095A0A1B0GVY8 99 aa7.12□□□□□ -1.27
SMG1-215ENST00000568239 TIMM44O43615 452 aa7.12□□□□□ -1.27
SMG1-215ENST00000568239 PRAMEF12O95522 483 aa7.12□□□□□ -1.27
SMG1-215ENST00000568239 PDHA1P08559 390 aa7.12□□□□□ -1.27
SMG1-215ENST00000568239 ATXN1LP0C7T5 689 aaKnown RBP7.12□□□□□ -1.27
SMG1-215ENST00000568239 HLA-DPA1P20036 260 aa7.12□□□□□ -1.27
SMG1-215ENST00000568239 CD70P32970 193 aa7.12□□□□□ -1.27
SMG1-215ENST00000568239 NEK3P51956 506 aa7.12□□□□□ -1.27
SMG1-215ENST00000568239 LIMK2P53671 638 aa7.12□□□□□ -1.27
SMG1-215ENST00000568239 LMAN2Q12907 356 aa7.12□□□□□ -1.27
SMG1-215ENST00000568239 PDE1CQ14123 709 aaPredicted RBP7.12□□□□□ -1.27
SMG1-215ENST00000568239 TSTD2Q5T7W7 516 aa7.12□□□□□ -1.27
SMG1-215ENST00000568239 RNF187Q5TA31 235 aaPredicted RBP7.12□□□□□ -1.27
SMG1-215ENST00000568239 RETSATQ6NUM9 610 aa7.12□□□□□ -1.27
SMG1-215ENST00000568239 NEPROQ6NW34 567 aa7.12□□□□□ -1.27
SMG1-215ENST00000568239 LDB1Q86U70 411 aaPredicted RBP7.12□□□□□ -1.27
SMG1-215ENST00000568239 TMEM25Q86YD3 366 aa7.12□□□□□ -1.27
SMG1-215ENST00000568239 ARID3BQ8IVW6 561 aaPredicted RBP7.12□□□□□ -1.27
SMG1-215ENST00000568239 EFHBQ8N7U6 833 aa7.12□□□□□ -1.27
SMG1-215ENST00000568239 GPATCH11Q8N954 259 aa7.12□□□□□ -1.27
SMG1-215ENST00000568239 RIN3Q8TB24 985 aa7.12□□□□□ -1.27
SMG1-215ENST00000568239 PTCD2Q8WV60 388 aaKnown RBP7.12□□□□□ -1.27
SMG1-215ENST00000568239 ZNF75CPQ92670 426 aaPredicted RBP7.12□□□□□ -1.27
SMG1-215ENST00000568239 HDAC10Q969S8 669 aa7.12□□□□□ -1.27
SMG1-215ENST00000568239 FEM1CQ96JP0 617 aa7.12□□□□□ -1.27
SMG1-215ENST00000568239 ZSWIM3Q96MP5 696 aa7.12□□□□□ -1.27
SMG1-215ENST00000568239 SMIM14Q96QK8 99 aa7.12□□□□□ -1.27
SMG1-215ENST00000568239 BBS2Q9BXC9 721 aa7.12□□□□□ -1.27
SMG1-215ENST00000568239 IGFLR1Q9H665 355 aa7.12□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms