RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 SECTM1Q8WVN6 248 aa2.99□□□□□ -1.93
VPS35-207ENST00000568191 THAP4Q8WY91 577 aa2.99□□□□□ -1.93
VPS35-207ENST00000568191 MASTLQ96GX5 879 aa2.99□□□□□ -1.93
VPS35-207ENST00000568191 UHRF2Q96PU4 802 aa2.99□□□□□ -1.93
VPS35-207ENST00000568191 NODALQ96S42 347 aa2.99□□□□□ -1.93
VPS35-207ENST00000568191 FAM167BQ9BTA0 163 aa2.99□□□□□ -1.93
VPS35-207ENST00000568191 CXorf56Q9H5V9 222 aa2.99□□□□□ -1.93
VPS35-207ENST00000568191 CLK4Q9HAZ1 481 aaKnown RBP2.99□□□□□ -1.93
VPS35-207ENST00000568191 NOD2Q9HC29 1040 aa2.99□□□□□ -1.93
VPS35-207ENST00000568191 DONSONQ9NYP3 566 aa2.99□□□□□ -1.93
VPS35-207ENST00000568191 SMARCAL1Q9NZC9 954 aa2.99□□□□□ -1.93
VPS35-207ENST00000568191 NLKQ9UBE8 527 aa2.99□□□□□ -1.93
VPS35-207ENST00000568191 VDAC3Q9Y277 283 aa2.99□□□□□ -1.93
VPS35-207ENST00000568191 RRP7AQ9Y3A4 280 aaKnown RBP2.99□□□□□ -1.93
VPS35-207ENST00000568191 DAAM1Q9Y4D1 1078 aa2.99□□□□□ -1.93
VPS35-207ENST00000568191 SNX9Q9Y5X1 595 aa2.99□□□□□ -1.93
VPS35-207ENST00000568191 CCDC194A0A1B0GVG4 234 aa2.98□□□□□ -1.93
VPS35-207ENST00000568191 hDV102S1A0JD36 115 aa2.98□□□□□ -1.93
VPS35-207ENST00000568191 ARHGAP10A1A4S6 786 aa2.98□□□□□ -1.93
VPS35-207ENST00000568191 LMX1BO60663 402 aa2.98□□□□□ -1.93
VPS35-207ENST00000568191 UMODP07911 640 aa2.98□□□□□ -1.93
VPS35-207ENST00000568191 CSF1P09603 554 aa2.98□□□□□ -1.93
VPS35-207ENST00000568191 WEE2P0C1S8 567 aa2.98□□□□□ -1.93
VPS35-207ENST00000568191 HNF1BP35680 557 aa2.98□□□□□ -1.93
VPS35-207ENST00000568191 ACTR2P61160 394 aa2.98□□□□□ -1.93
VPS35-207ENST00000568191 YWHAZP63104 245 aaKnown RBP2.98□□□□□ -1.93
VPS35-207ENST00000568191 PHEXP78562 749 aa2.98□□□□□ -1.93
VPS35-207ENST00000568191 CHAF1AQ13111 956 aaPredicted RBP2.98□□□□□ -1.93
VPS35-207ENST00000568191 ITGADQ13349 1161 aa2.98□□□□□ -1.93
VPS35-207ENST00000568191 OS9Q13438 667 aaPredicted RBP2.98□□□□□ -1.93
VPS35-207ENST00000568191 TNFAIP1Q13829 316 aa2.98□□□□□ -1.93
VPS35-207ENST00000568191 RUNX2Q13950 521 aa2.98□□□□□ -1.93
VPS35-207ENST00000568191 PRKG1Q13976 671 aa2.98□□□□□ -1.93
VPS35-207ENST00000568191 NEDD9Q14511 834 aa2.98□□□□□ -1.93
VPS35-207ENST00000568191 ARHGEF6Q15052 776 aa2.98□□□□□ -1.93
VPS35-207ENST00000568191 ME3Q16798 604 aa2.98□□□□□ -1.93
VPS35-207ENST00000568191 SYT16Q17RD7 645 aa2.98□□□□□ -1.93
VPS35-207ENST00000568191 TUBA1AQ71U36 451 aa2.98□□□□□ -1.93
VPS35-207ENST00000568191 NOL8Q76FK4 1167 aaKnown RBP2.98□□□□□ -1.93
VPS35-207ENST00000568191 SHFQ7M4L6 423 aa2.98□□□□□ -1.93
VPS35-207ENST00000568191 PRSS45Q7RTY3 260 aa2.98□□□□□ -1.93
VPS35-207ENST00000568191 TRMT1LQ7Z2T5 733 aaKnown RBP2.98□□□□□ -1.93
VPS35-207ENST00000568191 MON1AQ86VX9 555 aa2.98□□□□□ -1.93
VPS35-207ENST00000568191 SFR1Q86XK3 245 aa2.98□□□□□ -1.93
VPS35-207ENST00000568191 LURAP1LQ8IV03 231 aa2.98□□□□□ -1.93
VPS35-207ENST00000568191 PGBD5Q8N414 524 aa2.98□□□□□ -1.93
VPS35-207ENST00000568191 ZNF114Q8NC26 417 aa2.98□□□□□ -1.93
VPS35-207ENST00000568191 RFWD2Q8NHY2 731 aa2.98□□□□□ -1.93
VPS35-207ENST00000568191 GPT2Q8TD30 523 aa2.98□□□□□ -1.93
VPS35-207ENST00000568191 AFG1LQ8WV93 481 aa2.98□□□□□ -1.93
VPS35-207ENST00000568191 TMEM170AQ8WVE7 144 aa2.98□□□□□ -1.93
VPS35-207ENST00000568191 TRAPPC12Q8WVT3 735 aa2.98□□□□□ -1.93
VPS35-207ENST00000568191 POF1BQ8WVV4 589 aa2.98□□□□□ -1.93
VPS35-207ENST00000568191 WBP1Q96G27 269 aa2.98□□□□□ -1.93
VPS35-207ENST00000568191 YME1L1Q96TA2 773 aa2.98□□□□□ -1.93
VPS35-207ENST00000568191 CD180Q99467 661 aa2.98□□□□□ -1.93
VPS35-207ENST00000568191 TUBA1CQ9BQE3 449 aa2.98□□□□□ -1.93
VPS35-207ENST00000568191 CTDSP1Q9GZU7 261 aa2.98□□□□□ -1.93
VPS35-207ENST00000568191 GAREM1Q9H706 876 aa2.98□□□□□ -1.93
VPS35-207ENST00000568191 EVA1AQ9H8M9 152 aa2.98□□□□□ -1.93
VPS35-207ENST00000568191 UBTD1Q9HAC8 227 aa2.98□□□□□ -1.93
VPS35-207ENST00000568191 TAGLN3Q9UI15 199 aa2.98□□□□□ -1.93
VPS35-207ENST00000568191 CD207Q9UJ71 328 aa2.98□□□□□ -1.93
VPS35-207ENST00000568191 DOCK7Q96N67 2140 aa2.98□□□□□ -1.93
VPS35-207ENST00000568191 IGHV4OR15-8A0A075B7B6 117 aa2.97□□□□□ -1.93
VPS35-207ENST00000568191 A0A087WYN8 130 aa2.97□□□□□ -1.93
VPS35-207ENST00000568191 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP2.97□□□□□ -1.93
VPS35-207ENST00000568191 HNRNPCL2B2RXH8 293 aa2.97□□□□□ -1.93
VPS35-207ENST00000568191 EBAG9O00559 213 aa2.97□□□□□ -1.93
VPS35-207ENST00000568191 TIMM23O14925 209 aa2.97□□□□□ -1.93
VPS35-207ENST00000568191 ATP2C2O75185 946 aa2.97□□□□□ -1.93
VPS35-207ENST00000568191 NDUFB4O95168 129 aa2.97□□□□□ -1.93
VPS35-207ENST00000568191 PLGP00747 810 aaPredicted RBP2.97□□□□□ -1.93
VPS35-207ENST00000568191 ADAP00813 363 aa2.97□□□□□ -1.93
VPS35-207ENST00000568191 CGAP01215 116 aa2.97□□□□□ -1.93
VPS35-207ENST00000568191 TK1P04183 234 aa2.97□□□□□ -1.93
VPS35-207ENST00000568191 ATP1A1P05023 1023 aaKnown RBP2.97□□□□□ -1.93
VPS35-207ENST00000568191 SP1P08047 785 aa2.97□□□□□ -1.93
VPS35-207ENST00000568191 CHRM4P08173 479 aa2.97□□□□□ -1.93
VPS35-207ENST00000568191 GPTP24298 496 aa2.97□□□□□ -1.93
VPS35-207ENST00000568191 ADD2P35612 726 aa2.97□□□□□ -1.93
VPS35-207ENST00000568191 BLKP51451 505 aa2.97□□□□□ -1.93
VPS35-207ENST00000568191 PRKAA2P54646 552 aa2.97□□□□□ -1.93
VPS35-207ENST00000568191 SLC18A2Q05940 514 aa2.97□□□□□ -1.93
VPS35-207ENST00000568191 TBL3Q12788 808 aaKnown RBP2.97□□□□□ -1.93
VPS35-207ENST00000568191 CUL4BQ13620 913 aa2.97□□□□□ -1.93
VPS35-207ENST00000568191 TRIM14Q14142 442 aa2.97□□□□□ -1.93
VPS35-207ENST00000568191 DHX34Q14147 1143 aaKnown RBP2.97□□□□□ -1.93
VPS35-207ENST00000568191 MORC3Q14149 939 aa2.97□□□□□ -1.93
VPS35-207ENST00000568191 ANKRD1Q15327 319 aa2.97□□□□□ -1.93
VPS35-207ENST00000568191 FAM83BQ5T0W9 1011 aa2.97□□□□□ -1.93
VPS35-207ENST00000568191 STPG1Q5TH74 334 aa2.97□□□□□ -1.93
VPS35-207ENST00000568191 KRBA2Q6ZNG9 492 aa2.97□□□□□ -1.93
VPS35-207ENST00000568191 ZC3HC1Q86WB0 502 aaKnown RBP2.97□□□□□ -1.93
VPS35-207ENST00000568191 LINS1Q8NG48 757 aa2.97□□□□□ -1.93
VPS35-207ENST00000568191 MAGEC3Q8TD91 643 aa2.97□□□□□ -1.93
VPS35-207ENST00000568191 GDPD5Q8WTR4 605 aa2.97□□□□□ -1.93
VPS35-207ENST00000568191 TRIM63Q969Q1 353 aa2.97□□□□□ -1.93
VPS35-207ENST00000568191 SCMH1Q96GD3 660 aa2.97□□□□□ -1.93
VPS35-207ENST00000568191 DUX3Q96PT4 197 aa2.97□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms