RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 DNAJB1P25685 340 aa20.46■□□□□ 0.87
CLN3-230ENST00000568076 OR1D2P34982 312 aa20.46■□□□□ 0.87
CLN3-230ENST00000568076 KPNA1P52294 538 aaPredicted RBP20.46■□□□□ 0.87
CLN3-230ENST00000568076 C5orf22Q49AR2 442 aa20.46■□□□□ 0.87
CLN3-230ENST00000568076 ARMC3Q5W041 872 aa20.46■□□□□ 0.87
CLN3-230ENST00000568076 TMPRSS6Q8IU80 811 aa20.46■□□□□ 0.87
CLN3-230ENST00000568076 OR52K2Q8NGK3 314 aa20.46■□□□□ 0.87
CLN3-230ENST00000568076 MAPK15Q8TD08 544 aa20.46■□□□□ 0.87
CLN3-230ENST00000568076 TSNARE1Q96NA8 513 aa20.46■□□□□ 0.87
CLN3-230ENST00000568076 NUDCD1Q96RS6 583 aa20.46■□□□□ 0.87
CLN3-230ENST00000568076 OMDQ99983 421 aa20.46■□□□□ 0.87
CLN3-230ENST00000568076 UNKQ9C0B0 810 aaKnown RBP20.46■□□□□ 0.87
CLN3-230ENST00000568076 XPR1Q9UBH6 696 aa20.46■□□□□ 0.87
CLN3-230ENST00000568076 PLA2G4CQ9UP65 541 aa20.46■□□□□ 0.87
CLN3-230ENST00000568076 ACTL7AQ9Y615 435 aa20.46■□□□□ 0.87
CLN3-230ENST00000568076 A0A0D9SEW6 157 aa20.45■□□□□ 0.86
CLN3-230ENST00000568076 F5H5T6 163 aa20.45■□□□□ 0.86
CLN3-230ENST00000568076 SPECC1L-ADORA2AF8WAN1 911 aa20.45■□□□□ 0.86
CLN3-230ENST00000568076 H2AFYO75367 372 aaKnown RBP20.45■□□□□ 0.86
CLN3-230ENST00000568076 PAPSS2O95340 614 aaPredicted RBP20.45■□□□□ 0.86
CLN3-230ENST00000568076 CXCL10P02778 98 aa20.45■□□□□ 0.86
CLN3-230ENST00000568076 CRABP2P29373 138 aa20.45■□□□□ 0.86
CLN3-230ENST00000568076 GRIA4P48058 902 aa20.45■□□□□ 0.86
CLN3-230ENST00000568076 ARSDP51689 593 aa20.45■□□□□ 0.86
CLN3-230ENST00000568076 KIAA0408Q6ZU52 694 aa20.45■□□□□ 0.86
CLN3-230ENST00000568076 SREK1Q8WXA9 508 aaKnown RBP20.45■□□□□ 0.86
CLN3-230ENST00000568076 NDNQ99608 321 aa20.45■□□□□ 0.86
CLN3-230ENST00000568076 SEMA3CQ99985 751 aa20.45■□□□□ 0.86
CLN3-230ENST00000568076 MMADHCQ9H3L0 296 aaPredicted RBP20.45■□□□□ 0.86
CLN3-230ENST00000568076 DNMT3LQ9UJW3 386 aa20.45■□□□□ 0.86
CLN3-230ENST00000568076 CCL22O00626 93 aa20.45■□□□□ 0.86
CLN3-230ENST00000568076 DLX3O60479 287 aa20.45■□□□□ 0.86
CLN3-230ENST00000568076 ACSL4O60488 711 aa20.45■□□□□ 0.86
CLN3-230ENST00000568076 DIAPH2O60879 1101 aa20.45■□□□□ 0.86
CLN3-230ENST00000568076 KLHL2O95198 593 aa20.45■□□□□ 0.86
CLN3-230ENST00000568076 ATP5C1P36542 298 aaKnown RBP20.45■□□□□ 0.86
CLN3-230ENST00000568076 GTF2A1P52655 376 aaPredicted RBP20.45■□□□□ 0.86
CLN3-230ENST00000568076 KHDC1Q4VXA5 237 aaKnown RBP20.45■□□□□ 0.86
CLN3-230ENST00000568076 SLC9B1Q4ZJI4 515 aa20.45■□□□□ 0.86
CLN3-230ENST00000568076 TMCO4Q5TGY1 634 aa20.45■□□□□ 0.86
CLN3-230ENST00000568076 EPGNQ6UW88 154 aa20.45■□□□□ 0.86
CLN3-230ENST00000568076 LIN28BQ6ZN17 250 aaKnown RBP eCLIP20.45■□□□□ 0.86
CLN3-230ENST00000568076 ENDOVQ8N8Q3 282 aaKnown RBP20.45■□□□□ 0.86
CLN3-230ENST00000568076 TDRD5Q8NAT2 981 aaKnown RBP20.45■□□□□ 0.86
CLN3-230ENST00000568076 AGR3Q8TD06 166 aa20.45■□□□□ 0.86
CLN3-230ENST00000568076 OLFM1Q99784 485 aa20.45■□□□□ 0.86
CLN3-230ENST00000568076 DRC3Q9H069 523 aa20.45■□□□□ 0.86
CLN3-230ENST00000568076 KCTD3Q9Y597 815 aa20.45■□□□□ 0.86
CLN3-230ENST00000568076 UPP2O95045 317 aa20.44■□□□□ 0.86
CLN3-230ENST00000568076 TPBGLP0DKB5 382 aa20.44■□□□□ 0.86
CLN3-230ENST00000568076 MPSTP25325 297 aa20.44■□□□□ 0.86
CLN3-230ENST00000568076 HOXD9P28356 352 aaPredicted RBP20.44■□□□□ 0.86
CLN3-230ENST00000568076 PGM1P36871 562 aa20.44■□□□□ 0.86
CLN3-230ENST00000568076 LEPRP48357 1165 aaKnown RBP20.44■□□□□ 0.86
CLN3-230ENST00000568076 POU4F1Q01851 419 aa20.44■□□□□ 0.86
CLN3-230ENST00000568076 DEFB128Q7Z7B8 93 aa20.44■□□□□ 0.86
CLN3-230ENST00000568076 RNF168Q8IYW5 571 aaPredicted RBP20.44■□□□□ 0.86
CLN3-230ENST00000568076 WDR60Q8WVS4 1066 aa20.44■□□□□ 0.86
CLN3-230ENST00000568076 POLR1EQ9GZS1 481 aaKnown RBP20.44■□□□□ 0.86
CLN3-230ENST00000568076 HIPK3Q9H422 1215 aa20.44■□□□□ 0.86
CLN3-230ENST00000568076 CAMSAP3Q9P1Y5 1249 aaPredicted RBP20.44■□□□□ 0.86
CLN3-230ENST00000568076 ZNF840PA6NDX5 716 aa20.43■□□□□ 0.86
CLN3-230ENST00000568076 H3BNC9 293 aa20.43■□□□□ 0.86
CLN3-230ENST00000568076 LDB2O43679 373 aa20.43■□□□□ 0.86
CLN3-230ENST00000568076 SEC24AO95486 1093 aa20.43■□□□□ 0.86
CLN3-230ENST00000568076 MYL4P12829 197 aa20.43■□□□□ 0.86
CLN3-230ENST00000568076 GNAZP19086 355 aa20.43■□□□□ 0.86
CLN3-230ENST00000568076 ALDH7A1P49419 539 aaKnown RBP20.43■□□□□ 0.86
CLN3-230ENST00000568076 ATN1P54259 1190 aaPredicted RBP20.43■□□□□ 0.86
CLN3-230ENST00000568076 NAGLUP54802 743 aa20.43■□□□□ 0.86
CLN3-230ENST00000568076 KPNB1Q14974 876 aaKnown RBP20.43■□□□□ 0.86
CLN3-230ENST00000568076 USP41Q3LFD5 358 aa20.43■□□□□ 0.86
CLN3-230ENST00000568076 PTAR1Q7Z6K3 402 aaPredicted RBP20.43■□□□□ 0.86
CLN3-230ENST00000568076 CALML6Q8TD86 181 aa20.43■□□□□ 0.86
CLN3-230ENST00000568076 HEXDCQ8WVB3 486 aa20.43■□□□□ 0.86
CLN3-230ENST00000568076 ZNF512Q96ME7 567 aaPredicted RBP20.43■□□□□ 0.86
CLN3-230ENST00000568076 PPP1R12CQ9BZL4 782 aa20.43■□□□□ 0.86
CLN3-230ENST00000568076 CWH43Q9H720 699 aa20.43■□□□□ 0.86
CLN3-230ENST00000568076 MAN1C1Q9NR34 630 aa20.43■□□□□ 0.86
CLN3-230ENST00000568076 C15orf41Q9Y2V0 281 aa20.43■□□□□ 0.86
CLN3-230ENST00000568076 ZFP37Q9Y6Q3 630 aaPredicted RBP20.43■□□□□ 0.86
CLN3-230ENST00000568076 SEC23IPQ9Y6Y8 1000 aaKnown RBP20.43■□□□□ 0.86
CLN3-230ENST00000568076 COCHO43405 550 aa20.43■□□□□ 0.86
CLN3-230ENST00000568076 HMGA1P17096 107 aaKnown RBP20.43■□□□□ 0.86
CLN3-230ENST00000568076 PRMT2P55345 433 aa20.43■□□□□ 0.86
CLN3-230ENST00000568076 ACSBG2Q5FVE4 666 aa20.43■□□□□ 0.86
CLN3-230ENST00000568076 ARL13AQ5H913 290 aaPredicted RBP20.43■□□□□ 0.86
CLN3-230ENST00000568076 CILP2Q8IUL8 1156 aa20.43■□□□□ 0.86
CLN3-230ENST00000568076 OR7D4Q8NG98 312 aa20.43■□□□□ 0.86
CLN3-230ENST00000568076 HDAC10Q969S8 669 aa20.43■□□□□ 0.86
CLN3-230ENST00000568076 DEFB118Q96PH6 123 aa20.43■□□□□ 0.86
CLN3-230ENST00000568076 CDK5RAP1Q96SZ6 601 aaKnown RBP20.43■□□□□ 0.86
CLN3-230ENST00000568076 CLSTN3Q9BQT9 956 aa20.43■□□□□ 0.86
CLN3-230ENST00000568076 IGSF5Q9NSI5 407 aa20.43■□□□□ 0.86
CLN3-230ENST00000568076 TRIM17Q9Y577 477 aa20.43■□□□□ 0.86
CLN3-230ENST00000568076 BACE2Q9Y5Z0 518 aa20.43■□□□□ 0.86
CLN3-230ENST00000568076 TANC1Q9C0D5 1861 aa20.42■□□□□ 0.86
CLN3-230ENST00000568076 A0A087X1B8 175 aa20.42■□□□□ 0.86
CLN3-230ENST00000568076 OR51F1A6NGY5 319 aa20.42■□□□□ 0.86
CLN3-230ENST00000568076 H0Y3Z8 333 aa20.42■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms