RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 ZCCHC8Q6NZY4 707 aaKnown RBP16.28■□□□□ 0.2
CLN3-229ENST00000567963 DCUN1D2Q6PH85 259 aa16.28■□□□□ 0.2
CLN3-229ENST00000567963 LRRC69Q6ZNQ3 347 aa16.28■□□□□ 0.2
CLN3-229ENST00000567963 SNIP1Q8TAD8 396 aaKnown RBP16.28■□□□□ 0.2
CLN3-229ENST00000567963 FGF11Q92914 225 aa16.28■□□□□ 0.2
CLN3-229ENST00000567963 EVA1BQ9NVM1 165 aa16.28■□□□□ 0.2
CLN3-229ENST00000567963 DKK3Q9UBP4 350 aa16.28■□□□□ 0.2
CLN3-229ENST00000567963 PCDHB1Q9Y5F3 818 aa16.28■□□□□ 0.2
CLN3-229ENST00000567963 FGF10O15520 208 aaPredicted RBP16.27■□□□□ 0.19
CLN3-229ENST00000567963 RRP8O43159 456 aaKnown RBP16.27■□□□□ 0.19
CLN3-229ENST00000567963 ATP1A3P13637 1013 aa16.27■□□□□ 0.19
CLN3-229ENST00000567963 TIMP2P16035 220 aa16.27■□□□□ 0.19
CLN3-229ENST00000567963 ITIH2P19823 946 aa16.27■□□□□ 0.19
CLN3-229ENST00000567963 YPEL5P62699 121 aa16.27■□□□□ 0.19
CLN3-229ENST00000567963 OGDHQ02218 1023 aa16.27■□□□□ 0.19
CLN3-229ENST00000567963 CYTH1Q15438 398 aa16.27■□□□□ 0.19
CLN3-229ENST00000567963 CXorf40AQ8TE69 158 aa16.27■□□□□ 0.19
CLN3-229ENST00000567963 BTN2A2Q8WVV5 523 aa16.27■□□□□ 0.19
CLN3-229ENST00000567963 VCPIP1Q96JH7 1222 aa16.27■□□□□ 0.19
CLN3-229ENST00000567963 BBC3Q96PG8 261 aaPredicted RBP16.27■□□□□ 0.19
CLN3-229ENST00000567963 SYT11Q9BT88 431 aa16.27■□□□□ 0.19
CLN3-229ENST00000567963 ABCG4Q9H172 646 aa16.27■□□□□ 0.19
CLN3-229ENST00000567963 TAS2R14Q9NYV8 317 aa16.27■□□□□ 0.19
CLN3-229ENST00000567963 SALL4Q9UJQ4 1053 aa16.27■□□□□ 0.19
CLN3-229ENST00000567963 GOLGA6L22H0YM25 854 aa16.26■□□□□ 0.19
CLN3-229ENST00000567963 TPP1O14773 563 aa16.26■□□□□ 0.19
CLN3-229ENST00000567963 INSIG1O15503 277 aa16.26■□□□□ 0.19
CLN3-229ENST00000567963 DESP17661 470 aa16.26■□□□□ 0.19
CLN3-229ENST00000567963 TNFAIP3P21580 790 aa16.26■□□□□ 0.19
CLN3-229ENST00000567963 HTR7P34969 479 aa16.26■□□□□ 0.19
CLN3-229ENST00000567963 ACTN2P35609 894 aa16.26■□□□□ 0.19
CLN3-229ENST00000567963 IGFALSP35858 605 aa16.26■□□□□ 0.19
CLN3-229ENST00000567963 THOP1P52888 689 aa16.26■□□□□ 0.19
CLN3-229ENST00000567963 MAMLD1Q13495 774 aa16.26■□□□□ 0.19
CLN3-229ENST00000567963 KLHL40Q2TBA0 621 aa16.26■□□□□ 0.19
CLN3-229ENST00000567963 DEFB133Q30KQ1 61 aa16.26■□□□□ 0.19
CLN3-229ENST00000567963 VPS36Q86VN1 386 aa16.26■□□□□ 0.19
CLN3-229ENST00000567963 DNAAF5Q86Y56 855 aa16.26■□□□□ 0.19
CLN3-229ENST00000567963 IFI44Q8TCB0 444 aa16.26■□□□□ 0.19
CLN3-229ENST00000567963 HCAR2Q8TDS4 363 aa16.26■□□□□ 0.19
CLN3-229ENST00000567963 LMX1AQ8TE12 382 aa16.26■□□□□ 0.19
CLN3-229ENST00000567963 DEPDC7Q96QD5 511 aa16.26■□□□□ 0.19
CLN3-229ENST00000567963 LRRC19Q9H756 370 aa16.26■□□□□ 0.19
CLN3-229ENST00000567963 MBNL1Q9NR56 388 aaKnown RBP16.26■□□□□ 0.19
CLN3-229ENST00000567963 DONSONQ9NYP3 566 aa16.26■□□□□ 0.19
CLN3-229ENST00000567963 NCKIPSDQ9NZQ3 722 aa16.26■□□□□ 0.19
CLN3-229ENST00000567963 LHX3Q9UBR4 397 aa16.26■□□□□ 0.19
CLN3-229ENST00000567963 PNMA8BQ9ULN7 279 aaPredicted RBP16.26■□□□□ 0.19
CLN3-229ENST00000567963 MYO6Q9UM54 1294 aa16.26■□□□□ 0.19
CLN3-229ENST00000567963 BAHCC1Q9P281 2608 aa16.25■□□□□ 0.19
CLN3-229ENST00000567963 ASXL3Q9C0F0 2248 aa16.25■□□□□ 0.19
CLN3-229ENST00000567963 TOR1BO14657 336 aa16.25■□□□□ 0.19
CLN3-229ENST00000567963 RIOK3O14730 519 aaKnown RBP16.25■□□□□ 0.19
CLN3-229ENST00000567963 TEX33O43247 280 aa16.25■□□□□ 0.19
CLN3-229ENST00000567963 GCATO75600 419 aa16.25■□□□□ 0.19
CLN3-229ENST00000567963 SUOXP51687 545 aa16.25■□□□□ 0.19
CLN3-229ENST00000567963 TPI1P60174 286 aa16.25■□□□□ 0.19
CLN3-229ENST00000567963 ACAP1Q15027 740 aa16.25■□□□□ 0.19
CLN3-229ENST00000567963 CDKN3Q16667 212 aa16.25■□□□□ 0.19
CLN3-229ENST00000567963 TBC1D25Q3MII6 688 aa16.25■□□□□ 0.19
CLN3-229ENST00000567963 TMEM52BQ4KMG9 183 aa16.25■□□□□ 0.19
CLN3-229ENST00000567963 CCDC183Q5T5S1 534 aa16.25■□□□□ 0.19
CLN3-229ENST00000567963 PPP1R2P3Q6NXS1 205 aa16.25■□□□□ 0.19
CLN3-229ENST00000567963 RBFAQ8N0V3 343 aa16.25■□□□□ 0.19
CLN3-229ENST00000567963 AOPEPQ8N6M6 819 aa16.25■□□□□ 0.19
CLN3-229ENST00000567963 TP53I13Q8NBR0 393 aaPredicted RBP16.25■□□□□ 0.19
CLN3-229ENST00000567963 EXOC2Q96KP1 924 aa16.25■□□□□ 0.19
CLN3-229ENST00000567963 IL12RB2Q99665 862 aa16.25■□□□□ 0.19
CLN3-229ENST00000567963 WRAP53Q9BUR4 548 aaKnown RBP16.25■□□□□ 0.19
CLN3-229ENST00000567963 C1QTNF7Q9BXJ2 289 aa16.25■□□□□ 0.19
CLN3-229ENST00000567963 TCEAL2Q9H3H9 227 aaPredicted RBP16.25■□□□□ 0.19
CLN3-229ENST00000567963 PDFQ9HBH1 243 aa16.25■□□□□ 0.19
CLN3-229ENST00000567963 PARVAQ9NVD7 372 aa16.25■□□□□ 0.19
CLN3-229ENST00000567963 SPASTQ9UBP0 616 aa16.25■□□□□ 0.19
CLN3-229ENST00000567963 UBA2Q9UBT2 640 aaPredicted RBP16.25■□□□□ 0.19
CLN3-229ENST00000567963 APOBEC3BQ9UH17 382 aaKnown RBP16.25■□□□□ 0.19
CLN3-229ENST00000567963 EME2A4GXA9 379 aaPredicted RBP16.24■□□□□ 0.19
CLN3-229ENST00000567963 TMCO5BA8MYB1 307 aa16.24■□□□□ 0.19
CLN3-229ENST00000567963 J3KR12 359 aa16.24■□□□□ 0.19
CLN3-229ENST00000567963 PIGNO95427 931 aa16.24■□□□□ 0.19
CLN3-229ENST00000567963 TGM2P21980 687 aa16.24■□□□□ 0.19
CLN3-229ENST00000567963 EIF4A3P38919 411 aaKnown RBP16.24■□□□□ 0.19
CLN3-229ENST00000567963 NDST2P52849 883 aa16.24■□□□□ 0.19
CLN3-229ENST00000567963 ELP6Q0PNE2 266 aa16.24■□□□□ 0.19
CLN3-229ENST00000567963 GRM3Q14832 879 aa16.24■□□□□ 0.19
CLN3-229ENST00000567963 UGP2Q16851 508 aa16.24■□□□□ 0.19
CLN3-229ENST00000567963 PRRT3Q5FWE3 981 aa16.24■□□□□ 0.19
CLN3-229ENST00000567963 ERMARDQ5T6L9 678 aa16.24■□□□□ 0.19
CLN3-229ENST00000567963 PLEKHA7Q6IQ23 1121 aa16.24■□□□□ 0.19
CLN3-229ENST00000567963 PHACTR4Q8IZ21 702 aa16.24■□□□□ 0.19
CLN3-229ENST00000567963 ARFGAP1Q8N6T3 406 aa16.24■□□□□ 0.19
CLN3-229ENST00000567963 MAPK15Q8TD08 544 aa16.24■□□□□ 0.19
CLN3-229ENST00000567963 TBATAQ96M53 351 aa16.24■□□□□ 0.19
CLN3-229ENST00000567963 NCAPGQ9BPX3 1015 aa16.24■□□□□ 0.19
CLN3-229ENST00000567963 BOCQ9BWV1 1114 aa16.24■□□□□ 0.19
CLN3-229ENST00000567963 SUV39H2Q9H5I1 410 aa16.24■□□□□ 0.19
CLN3-229ENST00000567963 PRORYQ9H606 182 aa16.24■□□□□ 0.19
CLN3-229ENST00000567963 RTN4Q9NQC3 1192 aaKnown RBP16.24■□□□□ 0.19
CLN3-229ENST00000567963 GPATCH2LQ9NWQ4 482 aa16.24■□□□□ 0.19
CLN3-229ENST00000567963 AP4E1Q9UPM8 1137 aa16.24■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms