RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 OR2AP1Q8NGE2 309 aa17.5■□□□□ 0.39
CLN3-217ENST00000565354 OR2A12Q8NGT7 310 aa17.5■□□□□ 0.39
CLN3-217ENST00000565354 PIP4K2CQ8TBX8 421 aa17.5■□□□□ 0.39
CLN3-217ENST00000565354 GRIN3AQ8TCU5 1115 aa17.5■□□□□ 0.39
CLN3-217ENST00000565354 GDAP1L1Q96MZ0 367 aa17.5■□□□□ 0.39
CLN3-217ENST00000565354 ZNF599Q96NL3 588 aa17.5■□□□□ 0.39
CLN3-217ENST00000565354 FAM129BQ96TA1 746 aa17.5■□□□□ 0.39
CLN3-217ENST00000565354 OMDQ99983 421 aa17.5■□□□□ 0.39
CLN3-217ENST00000565354 HEPHQ9BQS7 1158 aa17.5■□□□□ 0.39
CLN3-217ENST00000565354 PABPC3Q9H361 631 aaKnown RBP17.5■□□□□ 0.39
CLN3-217ENST00000565354 ZDHHC6Q9H6R6 413 aa17.5■□□□□ 0.39
CLN3-217ENST00000565354 PDFQ9HBH1 243 aa17.5■□□□□ 0.39
CLN3-217ENST00000565354 ITM2CQ9NQX7 267 aa17.5■□□□□ 0.39
CLN3-217ENST00000565354 DYRK4Q9NR20 520 aa17.5■□□□□ 0.39
CLN3-217ENST00000565354 HECAQ9UBI9 543 aaPredicted RBP17.5■□□□□ 0.39
CLN3-217ENST00000565354 SUSD2Q9UGT4 822 aa17.5■□□□□ 0.39
CLN3-217ENST00000565354 PACSIN2Q9UNF0 486 aaPredicted RBP17.5■□□□□ 0.39
CLN3-217ENST00000565354 KPNA3O00505 521 aaPredicted RBP17.49■□□□□ 0.39
CLN3-217ENST00000565354 CST8O60676 142 aa17.49■□□□□ 0.39
CLN3-217ENST00000565354 RNASEH2AO75792 299 aaKnown RBP17.49■□□□□ 0.39
CLN3-217ENST00000565354 KRT10P13645 584 aa17.49■□□□□ 0.39
CLN3-217ENST00000565354 C5AR1P21730 350 aa17.49■□□□□ 0.39
CLN3-217ENST00000565354 CD6P30203 668 aa17.49■□□□□ 0.39
CLN3-217ENST00000565354 GARSP41250 739 aaKnown RBP17.49■□□□□ 0.39
CLN3-217ENST00000565354 TPMTP51580 245 aa17.49■□□□□ 0.39
CLN3-217ENST00000565354 CCNHP51946 323 aaPredicted RBP17.49■□□□□ 0.39
CLN3-217ENST00000565354 COPS2P61201 443 aa17.49■□□□□ 0.39
CLN3-217ENST00000565354 GBE1Q04446 702 aa17.49■□□□□ 0.39
CLN3-217ENST00000565354 GALNT2Q10471 571 aa17.49■□□□□ 0.39
CLN3-217ENST00000565354 LBRQ14739 615 aaKnown RBP17.49■□□□□ 0.39
CLN3-217ENST00000565354 TMCO4Q5TGY1 634 aa17.49■□□□□ 0.39
CLN3-217ENST00000565354 SLC9A4Q6AI14 798 aa17.49■□□□□ 0.39
CLN3-217ENST00000565354 RGL4Q8IZJ4 473 aa17.49■□□□□ 0.39
CLN3-217ENST00000565354 CHST14Q8NCH0 376 aa17.49■□□□□ 0.39
CLN3-217ENST00000565354 MDM1Q8TC05 714 aa17.49■□□□□ 0.39
CLN3-217ENST00000565354 ZNF419Q96HQ0 510 aaPredicted RBP17.49■□□□□ 0.39
CLN3-217ENST00000565354 KCNF1Q9H3M0 494 aa17.49■□□□□ 0.39
CLN3-217ENST00000565354 FBXL12Q9NXK8 326 aa17.49■□□□□ 0.39
CLN3-217ENST00000565354 USP36Q9P275 1121 aaKnown RBP17.49■□□□□ 0.39
CLN3-217ENST00000565354 SEPT3Q9UH03 358 aa17.49■□□□□ 0.39
CLN3-217ENST00000565354 APOBEC2Q9Y235 224 aaKnown RBP17.49■□□□□ 0.39
CLN3-217ENST00000565354 ASH1LQ9NR48 2969 aaKnown RBP17.49■□□□□ 0.39
CLN3-217ENST00000565354 CABIN1Q9Y6J0 2220 aa17.48■□□□□ 0.39
CLN3-217ENST00000565354 hCG_1818297A0A087WSY0 165 aa17.48■□□□□ 0.39
CLN3-217ENST00000565354 A0A1W2PP55 124 aa17.48■□□□□ 0.39
CLN3-217ENST00000565354 KRIT1O00522 736 aa17.48■□□□□ 0.39
CLN3-217ENST00000565354 PPP1R12AO14974 1030 aaPredicted RBP17.48■□□□□ 0.39
CLN3-217ENST00000565354 RENBPP51606 427 aa17.48■□□□□ 0.39
CLN3-217ENST00000565354 CYTH1Q15438 398 aa17.48■□□□□ 0.39
CLN3-217ENST00000565354 PPP2R5EQ16537 467 aa17.48■□□□□ 0.39
CLN3-217ENST00000565354 POM121L1PQ3SYA9 428 aa17.48■□□□□ 0.39
CLN3-217ENST00000565354 ARSIQ5FYB1 569 aa17.48■□□□□ 0.39
CLN3-217ENST00000565354 SYCP2LQ5T4T6 812 aa17.48■□□□□ 0.39
CLN3-217ENST00000565354 ATXN7L2Q5T6C5 722 aaPredicted RBP17.48■□□□□ 0.39
CLN3-217ENST00000565354 BZW1Q7L1Q6 419 aaKnown RBP17.48■□□□□ 0.39
CLN3-217ENST00000565354 PLPP6Q8IY26 295 aa17.48■□□□□ 0.39
CLN3-217ENST00000565354 PAF1Q8N7H5 531 aa17.48■□□□□ 0.39
CLN3-217ENST00000565354 PLD5Q8N7P1 536 aa17.48■□□□□ 0.39
CLN3-217ENST00000565354 TRIM58Q8NG06 486 aa17.48■□□□□ 0.39
CLN3-217ENST00000565354 OR6K2Q8NGY2 324 aa17.48■□□□□ 0.39
CLN3-217ENST00000565354 UBE2Q2Q8WVN8 375 aa17.48■□□□□ 0.39
CLN3-217ENST00000565354 HNRNPLLQ8WVV9 542 aaKnown RBP17.48■□□□□ 0.39
CLN3-217ENST00000565354 PPP1R16AQ96I34 528 aa17.48■□□□□ 0.39
CLN3-217ENST00000565354 EXOC2Q96KP1 924 aa17.48■□□□□ 0.39
CLN3-217ENST00000565354 BTBD1Q9H0C5 482 aa17.48■□□□□ 0.39
CLN3-217ENST00000565354 CD93Q9NPY3 652 aa17.48■□□□□ 0.39
CLN3-217ENST00000565354 HAUS2Q9NVX0 235 aa17.48■□□□□ 0.39
CLN3-217ENST00000565354 DTLQ9NZJ0 730 aa17.48■□□□□ 0.39
CLN3-217ENST00000565354 RAXQ9Y2V3 346 aa17.48■□□□□ 0.39
CLN3-217ENST00000565354 MAFKO60675 156 aa17.47■□□□□ 0.39
CLN3-217ENST00000565354 CBFA2T3O75081 653 aa17.47■□□□□ 0.39
CLN3-217ENST00000565354 ZNF821O75541 412 aaPredicted RBP17.47■□□□□ 0.39
CLN3-217ENST00000565354 LEFTY1O75610 366 aa17.47■□□□□ 0.39
CLN3-217ENST00000565354 POP4O95707 220 aaKnown RBP17.47■□□□□ 0.39
CLN3-217ENST00000565354 GNSP15586 552 aa17.47■□□□□ 0.39
CLN3-217ENST00000565354 TGM2P21980 687 aa17.47■□□□□ 0.39
CLN3-217ENST00000565354 CCDC15Q0P6D6 951 aa17.47■□□□□ 0.39
CLN3-217ENST00000565354 GRIK2Q13002 908 aa17.47■□□□□ 0.39
CLN3-217ENST00000565354 PDK1Q15118 436 aa17.47■□□□□ 0.39
CLN3-217ENST00000565354 MYLK3Q32MK0 819 aa17.47■□□□□ 0.39
CLN3-217ENST00000565354 MARC1Q5VT66 337 aa17.47■□□□□ 0.39
CLN3-217ENST00000565354 NPNTQ6UXI9 565 aa17.47■□□□□ 0.39
CLN3-217ENST00000565354 USP30Q70CQ3 517 aa17.47■□□□□ 0.39
CLN3-217ENST00000565354 GLRX5Q86SX6 157 aa17.47■□□□□ 0.39
CLN3-217ENST00000565354 SLCO6A1Q86UG4 719 aa17.47■□□□□ 0.39
CLN3-217ENST00000565354 TMIEQ8NEW7 156 aa17.47■□□□□ 0.39
CLN3-217ENST00000565354 P3H4Q92791 437 aa17.47■□□□□ 0.39
CLN3-217ENST00000565354 FOXJ1Q92949 421 aa17.47■□□□□ 0.39
CLN3-217ENST00000565354 TOE1Q96GM8 510 aaKnown RBP17.47■□□□□ 0.39
CLN3-217ENST00000565354 BBC3Q96PG8 261 aaPredicted RBP17.47■□□□□ 0.39
CLN3-217ENST00000565354 HEMGNQ9BXL5 484 aa17.47■□□□□ 0.39
CLN3-217ENST00000565354 ZDHHC5Q9C0B5 715 aa17.47■□□□□ 0.39
CLN3-217ENST00000565354 SCUBE2Q9NQ36 999 aa17.47■□□□□ 0.39
CLN3-217ENST00000565354 LHX3Q9UBR4 397 aa17.47■□□□□ 0.39
CLN3-217ENST00000565354 PPM1HQ9ULR3 514 aa17.47■□□□□ 0.39
CLN3-217ENST00000565354 CTSLP07711 333 aa17.46■□□□□ 0.39
CLN3-217ENST00000565354 CCNCP24863 283 aa17.46■□□□□ 0.39
CLN3-217ENST00000565354 HSPA9P38646 679 aaKnown RBP17.46■□□□□ 0.39
CLN3-217ENST00000565354 MMP13P45452 471 aa17.46■□□□□ 0.39
CLN3-217ENST00000565354 NR2C2P49116 596 aa17.46■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms