RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 SLC31A1O15431 190 aa13.55□□□□□ -0.24
CLK3-213ENST00000563842 IL4RP24394 825 aa13.55□□□□□ -0.24
CLK3-213ENST00000563842 SERPINA4P29622 427 aa13.55□□□□□ -0.24
CLK3-213ENST00000563842 CCT8P50990 548 aa13.55□□□□□ -0.24
CLK3-213ENST00000563842 HADHBP55084 474 aaKnown RBP13.55□□□□□ -0.24
CLK3-213ENST00000563842 TAS2R40P59535 323 aa13.55□□□□□ -0.24
CLK3-213ENST00000563842 BNC1Q01954 994 aa13.55□□□□□ -0.24
CLK3-213ENST00000563842 ELP6Q0PNE2 266 aa13.55□□□□□ -0.24
CLK3-213ENST00000563842 MMRN1Q13201 1228 aa13.55□□□□□ -0.24
CLK3-213ENST00000563842 SGCGQ13326 291 aa13.55□□□□□ -0.24
CLK3-213ENST00000563842 PAFAH1B3Q15102 231 aaKnown RBP13.55□□□□□ -0.24
CLK3-213ENST00000563842 ZNF423Q2M1K9 1284 aa13.55□□□□□ -0.24
CLK3-213ENST00000563842 ZNF284Q2VY69 593 aa13.55□□□□□ -0.24
CLK3-213ENST00000563842 ATP13A4Q4VNC1 1196 aa13.55□□□□□ -0.24
CLK3-213ENST00000563842 ANKRD20A8PQ5CZ79 823 aa13.55□□□□□ -0.24
CLK3-213ENST00000563842 LRRC38Q5VT99 294 aa13.55□□□□□ -0.24
CLK3-213ENST00000563842 TIGD7Q6NT04 549 aaPredicted RBP13.55□□□□□ -0.24
CLK3-213ENST00000563842 PSAPL1Q6NUJ1 521 aa13.55□□□□□ -0.24
CLK3-213ENST00000563842 BRAT1Q6PJG6 821 aa13.55□□□□□ -0.24
CLK3-213ENST00000563842 PIP4P1Q86T03 277 aa13.55□□□□□ -0.24
CLK3-213ENST00000563842 PAF1Q8N7H5 531 aa13.55□□□□□ -0.24
CLK3-213ENST00000563842 TSEN2Q8NCE0 465 aaKnown RBP13.55□□□□□ -0.24
CLK3-213ENST00000563842 OR2I1PQ8NGU4 316 aa13.55□□□□□ -0.24
CLK3-213ENST00000563842 ASB12Q8WXK4 309 aa13.55□□□□□ -0.24
CLK3-213ENST00000563842 KLHDC7BQ96G42 594 aa13.55□□□□□ -0.24
CLK3-213ENST00000563842 EXOC2Q96KP1 924 aa13.55□□□□□ -0.24
CLK3-213ENST00000563842 PSKH2Q96QS6 385 aa13.55□□□□□ -0.24
CLK3-213ENST00000563842 SLC17A9Q9BYT1 436 aa13.55□□□□□ -0.24
CLK3-213ENST00000563842 SUV39H2Q9H5I1 410 aa13.55□□□□□ -0.24
CLK3-213ENST00000563842 DDX56Q9NY93 547 aaKnown RBP13.55□□□□□ -0.24
CLK3-213ENST00000563842 PCDHB9Q9Y5E1 797 aa13.55□□□□□ -0.24
CLK3-213ENST00000563842 PCDHA13Q9Y5I0 950 aa13.55□□□□□ -0.24
CLK3-213ENST00000563842 EPN1Q9Y6I3 576 aaPredicted RBP13.55□□□□□ -0.24
CLK3-213ENST00000563842 CFAP47Q6ZTR5 3102 aa13.55□□□□□ -0.24
CLK3-213ENST00000563842 A0A0A6YYK5 440 aaPredicted RBP13.54□□□□□ -0.24
CLK3-213ENST00000563842 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP13.54□□□□□ -0.24
CLK3-213ENST00000563842 A0A1W2PQ67 120 aa13.54□□□□□ -0.24
CLK3-213ENST00000563842 FLRT2O43155 660 aa13.54□□□□□ -0.24
CLK3-213ENST00000563842 SPOPO43791 374 aa13.54□□□□□ -0.24
CLK3-213ENST00000563842 MAFKO60675 156 aa13.54□□□□□ -0.24
CLK3-213ENST00000563842 CD48P09326 243 aa13.54□□□□□ -0.24
CLK3-213ENST00000563842 CD59P13987 128 aa13.54□□□□□ -0.24
CLK3-213ENST00000563842 MX2P20592 715 aa13.54□□□□□ -0.24
CLK3-213ENST00000563842 FECHP22830 423 aa13.54□□□□□ -0.24
CLK3-213ENST00000563842 KDELR1P24390 212 aa13.54□□□□□ -0.24
CLK3-213ENST00000563842 CDC25BP30305 580 aa13.54□□□□□ -0.24
CLK3-213ENST00000563842 ARRB1P49407 418 aaPredicted RBP13.54□□□□□ -0.24
CLK3-213ENST00000563842 AP1S1P61966 158 aa13.54□□□□□ -0.24
CLK3-213ENST00000563842 POLR2LP62875 67 aaKnown RBP13.54□□□□□ -0.24
CLK3-213ENST00000563842 BCL2L1Q07817 233 aa13.54□□□□□ -0.24
CLK3-213ENST00000563842 INAVAQ3KP66 663 aa13.54□□□□□ -0.24
CLK3-213ENST00000563842 TMEM259Q4ZIN3 620 aa13.54□□□□□ -0.24
CLK3-213ENST00000563842 RALGPS1Q5JS13 557 aa13.54□□□□□ -0.24
CLK3-213ENST00000563842 MARC1Q5VT66 337 aa13.54□□□□□ -0.24
CLK3-213ENST00000563842 ARHGAP36Q6ZRI8 547 aa13.54□□□□□ -0.24
CLK3-213ENST00000563842 DCP2Q8IU60 420 aaKnown RBP13.54□□□□□ -0.24
CLK3-213ENST00000563842 RHOT1Q8IXI2 618 aa13.54□□□□□ -0.24
CLK3-213ENST00000563842 NETO2Q8NC67 525 aa13.54□□□□□ -0.24
CLK3-213ENST00000563842 DEFB124Q8NES8 71 aa13.54□□□□□ -0.24
CLK3-213ENST00000563842 PCDH19Q8TAB3 1148 aa13.54□□□□□ -0.24
CLK3-213ENST00000563842 TRAF3IP1Q8TDR0 691 aaPredicted RBP13.54□□□□□ -0.24
CLK3-213ENST00000563842 FAF2Q96CS3 445 aa13.54□□□□□ -0.24
CLK3-213ENST00000563842 ZNF830Q96NB3 372 aaPredicted RBP13.54□□□□□ -0.24
CLK3-213ENST00000563842 ELF4Q99607 663 aaPredicted RBP13.54□□□□□ -0.24
CLK3-213ENST00000563842 C1QTNF7Q9BXJ2 289 aa13.54□□□□□ -0.24
CLK3-213ENST00000563842 MAK16Q9BXY0 300 aaKnown RBP13.54□□□□□ -0.24
CLK3-213ENST00000563842 ERVMER34-1Q9H9K5 563 aa13.54□□□□□ -0.24
CLK3-213ENST00000563842 ZFR2Q9UPR6 939 aaKnown RBP13.54□□□□□ -0.24
CLK3-213ENST00000563842 HS3ST3A1Q9Y663 406 aa13.54□□□□□ -0.24
CLK3-213ENST00000563842 DNAH14Q0VDD8 3507 aa13.54□□□□□ -0.24
CLK3-213ENST00000563842 TSPAN11A1L157 253 aa13.53□□□□□ -0.24
CLK3-213ENST00000563842 LRRD1A4D1F6 860 aa13.53□□□□□ -0.24
CLK3-213ENST00000563842 AREL1O15033 823 aa13.53□□□□□ -0.24
CLK3-213ENST00000563842 INSIG1O15503 277 aa13.53□□□□□ -0.24
CLK3-213ENST00000563842 PCDHGA12O60330 932 aa13.53□□□□□ -0.24
CLK3-213ENST00000563842 NDUFA10O95299 355 aa13.53□□□□□ -0.24
CLK3-213ENST00000563842 WNT1P04628 370 aa13.53□□□□□ -0.24
CLK3-213ENST00000563842 ADRB1P08588 477 aa13.53□□□□□ -0.24
CLK3-213ENST00000563842 ZFXP17010 805 aaPredicted RBP13.53□□□□□ -0.24
CLK3-213ENST00000563842 NFKBIAP25963 317 aa13.53□□□□□ -0.24
CLK3-213ENST00000563842 ABL2P42684 1182 aa13.53□□□□□ -0.24
CLK3-213ENST00000563842 SCNN1BP51168 640 aa13.53□□□□□ -0.24
CLK3-213ENST00000563842 NXPH1P58417 271 aa13.53□□□□□ -0.24
CLK3-213ENST00000563842 SLC10A7Q0GE19 358 aa13.53□□□□□ -0.24
CLK3-213ENST00000563842 GALNT2Q10471 571 aa13.53□□□□□ -0.24
CLK3-213ENST00000563842 IFI16Q16666 785 aaKnown RBP13.53□□□□□ -0.24
CLK3-213ENST00000563842 SEL1L3Q68CR1 1132 aa13.53□□□□□ -0.24
CLK3-213ENST00000563842 NCBP2-AS2Q69YL0 99 aa13.53□□□□□ -0.24
CLK3-213ENST00000563842 ERAP2Q6P179 960 aa13.53□□□□□ -0.24
CLK3-213ENST00000563842 LAYNQ6UX15 382 aa13.53□□□□□ -0.24
CLK3-213ENST00000563842 CPNE8Q86YQ8 564 aa13.53□□□□□ -0.24
CLK3-213ENST00000563842 NAXDQ8IW45 347 aa13.53□□□□□ -0.24
CLK3-213ENST00000563842 TP53INP2Q8IXH6 220 aa13.53□□□□□ -0.24
CLK3-213ENST00000563842 TXLNBQ8N3L3 684 aa13.53□□□□□ -0.24
CLK3-213ENST00000563842 TMEM145Q8NBT3 493 aa13.53□□□□□ -0.24
CLK3-213ENST00000563842 CXorf40AQ8TE69 158 aa13.53□□□□□ -0.24
CLK3-213ENST00000563842 SETD7Q8WTS6 366 aaKnown RBP13.53□□□□□ -0.24
CLK3-213ENST00000563842 KLK6Q92876 244 aa13.53□□□□□ -0.24
CLK3-213ENST00000563842 LENG8Q96PV6 779 aaPredicted RBP13.53□□□□□ -0.24
CLK3-213ENST00000563842 RNF157Q96PX1 679 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms