RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 STK25O00506 426 aa16.75■□□□□ 0.27
VPS4A-202ENST00000562754 TRAFD1O14545 582 aaPredicted RBP16.75■□□□□ 0.27
VPS4A-202ENST00000562754 HTRA2O43464 458 aaPredicted RBP16.75■□□□□ 0.27
VPS4A-202ENST00000562754 SYNCRIPO60506 623 aaKnown RBP16.75■□□□□ 0.27
VPS4A-202ENST00000562754 SOCS5O75159 536 aa16.75■□□□□ 0.27
VPS4A-202ENST00000562754 LEFTY1O75610 366 aa16.75■□□□□ 0.27
VPS4A-202ENST00000562754 AP2A1O95782 977 aa16.75■□□□□ 0.27
VPS4A-202ENST00000562754 PRLP01236 227 aa16.75■□□□□ 0.27
VPS4A-202ENST00000562754 UGT2B4P06133 528 aa16.75■□□□□ 0.27
VPS4A-202ENST00000562754 APRTP07741 180 aa16.75■□□□□ 0.27
VPS4A-202ENST00000562754 TPSB2P20231 275 aa16.75■□□□□ 0.27
VPS4A-202ENST00000562754 ADRA1AP35348 466 aa16.75■□□□□ 0.27
VPS4A-202ENST00000562754 METAP1P53582 386 aa16.75■□□□□ 0.27
VPS4A-202ENST00000562754 COPAP53621 1224 aa16.75■□□□□ 0.27
VPS4A-202ENST00000562754 RAD51Q06609 339 aa16.75■□□□□ 0.27
VPS4A-202ENST00000562754 STARD3Q14849 445 aa16.75■□□□□ 0.27
VPS4A-202ENST00000562754 TPSAB1Q15661 275 aa16.75■□□□□ 0.27
VPS4A-202ENST00000562754 ARSIQ5FYB1 569 aa16.75■□□□□ 0.27
VPS4A-202ENST00000562754 NAT8LQ8N9F0 302 aa16.75■□□□□ 0.27
VPS4A-202ENST00000562754 PRCCQ92733 491 aaPredicted RBP16.75■□□□□ 0.27
VPS4A-202ENST00000562754 PPP1R2P1Q96PQ5 205 aa16.75■□□□□ 0.27
VPS4A-202ENST00000562754 TRIB3Q96RU7 358 aa16.75■□□□□ 0.27
VPS4A-202ENST00000562754 FICDQ9BVA6 458 aa16.75■□□□□ 0.27
VPS4A-202ENST00000562754 RSPH9Q9H1X1 276 aaPredicted RBP16.75■□□□□ 0.27
VPS4A-202ENST00000562754 MFSD1Q9H3U5 465 aa16.75■□□□□ 0.27
VPS4A-202ENST00000562754 ATP13A3Q9H7F0 1226 aa16.75■□□□□ 0.27
VPS4A-202ENST00000562754 SARDHQ9UL12 918 aa16.75■□□□□ 0.27
VPS4A-202ENST00000562754 PPM1HQ9ULR3 514 aa16.75■□□□□ 0.27
VPS4A-202ENST00000562754 TPX2Q9ULW0 747 aaKnown RBP16.75■□□□□ 0.27
VPS4A-202ENST00000562754 AAR2Q9Y312 384 aaKnown RBP16.75■□□□□ 0.27
VPS4A-202ENST00000562754 TMEM221A6NGB7 291 aa16.74■□□□□ 0.27
VPS4A-202ENST00000562754 E7EVH7 732 aa16.74■□□□□ 0.27
VPS4A-202ENST00000562754 M0R296 226 aa16.74■□□□□ 0.27
VPS4A-202ENST00000562754 FZD6O60353 706 aa16.74■□□□□ 0.27
VPS4A-202ENST00000562754 USP12O75317 370 aa16.74■□□□□ 0.27
VPS4A-202ENST00000562754 PRNPP04156 253 aa16.74■□□□□ 0.27
VPS4A-202ENST00000562754 DCNP07585 359 aaKnown RBP16.74■□□□□ 0.27
VPS4A-202ENST00000562754 SERPINA4P29622 427 aa16.74■□□□□ 0.27
VPS4A-202ENST00000562754 GRIA1P42261 906 aa16.74■□□□□ 0.27
VPS4A-202ENST00000562754 RPS9P46781 194 aaKnown RBP16.74■□□□□ 0.27
VPS4A-202ENST00000562754 PSMD8P48556 350 aa16.74■□□□□ 0.27
VPS4A-202ENST00000562754 ITGA8P53708 1063 aa16.74■□□□□ 0.27
VPS4A-202ENST00000562754 BCL2L1Q07817 233 aa16.74■□□□□ 0.27
VPS4A-202ENST00000562754 GRM3Q14832 879 aa16.74■□□□□ 0.27
VPS4A-202ENST00000562754 CRY1Q16526 586 aa16.74■□□□□ 0.27
VPS4A-202ENST00000562754 CCDC70Q6NSX1 233 aa16.74■□□□□ 0.27
VPS4A-202ENST00000562754 HIBCHQ6NVY1 386 aaPredicted RBP16.74■□□□□ 0.27
VPS4A-202ENST00000562754 GDPD4Q6W3E5 623 aa16.74■□□□□ 0.27
VPS4A-202ENST00000562754 ZNF534Q76KX8 674 aa16.74■□□□□ 0.27
VPS4A-202ENST00000562754 ZSWIM9Q86XI8 627 aa16.74■□□□□ 0.27
VPS4A-202ENST00000562754 CACUL1Q86Y37 369 aa16.74■□□□□ 0.27
VPS4A-202ENST00000562754 MMAAQ8IVH4 418 aaKnown RBP16.74■□□□□ 0.27
VPS4A-202ENST00000562754 PPIL6Q8IXY8 311 aa16.74■□□□□ 0.27
VPS4A-202ENST00000562754 OR2T3Q8NH03 318 aa16.74■□□□□ 0.27
VPS4A-202ENST00000562754 PIP4K2CQ8TBX8 421 aa16.74■□□□□ 0.27
VPS4A-202ENST00000562754 ECHDC3Q96DC8 303 aa16.74■□□□□ 0.27
VPS4A-202ENST00000562754 FEM1CQ96JP0 617 aa16.74■□□□□ 0.27
VPS4A-202ENST00000562754 APOL2Q9BQE5 337 aa16.74■□□□□ 0.27
VPS4A-202ENST00000562754 SLC6A17Q9H1V8 727 aa16.74■□□□□ 0.27
VPS4A-202ENST00000562754 ANKZF1Q9H8Y5 726 aa16.74■□□□□ 0.27
VPS4A-202ENST00000562754 LRRC40Q9H9A6 602 aa16.74■□□□□ 0.27
VPS4A-202ENST00000562754 EPB41L5Q9HCM4 733 aa16.74■□□□□ 0.27
VPS4A-202ENST00000562754 DLGAP2Q9P1A6 1054 aa16.74■□□□□ 0.27
VPS4A-202ENST00000562754 WHRNQ9P202 907 aa16.74■□□□□ 0.27
VPS4A-202ENST00000562754 CHKBQ9Y259 395 aa16.74■□□□□ 0.27
VPS4A-202ENST00000562754 SIT1Q9Y3P8 196 aa16.74■□□□□ 0.27
VPS4A-202ENST00000562754 TSPAN11A1L157 253 aa16.73■□□□□ 0.27
VPS4A-202ENST00000562754 GOLGA6CA6NDK9 693 aa16.73■□□□□ 0.27
VPS4A-202ENST00000562754 GOLGA6BA6NDN3 693 aa16.73■□□□□ 0.27
VPS4A-202ENST00000562754 ERI2A8K979 691 aaKnown RBP16.73■□□□□ 0.27
VPS4A-202ENST00000562754 PSMD3O43242 534 aa16.73■□□□□ 0.27
VPS4A-202ENST00000562754 SUN1O94901 812 aa16.73■□□□□ 0.27
VPS4A-202ENST00000562754 PGLSO95336 258 aa16.73■□□□□ 0.27
VPS4A-202ENST00000562754 AGTP01019 485 aa16.73■□□□□ 0.27
VPS4A-202ENST00000562754 PDHA1P08559 390 aa16.73■□□□□ 0.27
VPS4A-202ENST00000562754 ATXN1LP0C7T5 689 aaKnown RBP16.73■□□□□ 0.27
VPS4A-202ENST00000562754 GOLGA6DP0CG33 693 aa16.73■□□□□ 0.27
VPS4A-202ENST00000562754 ALADP13716 330 aa16.73■□□□□ 0.27
VPS4A-202ENST00000562754 CHRNA4P43681 627 aa16.73■□□□□ 0.27
VPS4A-202ENST00000562754 LMAN1P49257 510 aa16.73■□□□□ 0.27
VPS4A-202ENST00000562754 DRG2P55039 364 aaKnown RBP16.73■□□□□ 0.27
VPS4A-202ENST00000562754 RPS14P62263 151 aaKnown RBP16.73■□□□□ 0.27
VPS4A-202ENST00000562754 SATB1Q01826 763 aa16.73■□□□□ 0.27
VPS4A-202ENST00000562754 CDK18Q07002 472 aa16.73■□□□□ 0.27
VPS4A-202ENST00000562754 POM121L1PQ3SYA9 428 aa16.73■□□□□ 0.27
VPS4A-202ENST00000562754 ZDHHC24Q6UX98 284 aa16.73■□□□□ 0.27
VPS4A-202ENST00000562754 SYT13Q7L8C5 426 aa16.73■□□□□ 0.27
VPS4A-202ENST00000562754 KDELC2Q7Z4H8 507 aa16.73■□□□□ 0.27
VPS4A-202ENST00000562754 TMIEQ8NEW7 156 aa16.73■□□□□ 0.27
VPS4A-202ENST00000562754 ARRDC3Q96B67 414 aa16.73■□□□□ 0.27
VPS4A-202ENST00000562754 LRIG1Q96JA1 1093 aa16.73■□□□□ 0.27
VPS4A-202ENST00000562754 ZNF641Q96N77 438 aaPredicted RBP16.73■□□□□ 0.27
VPS4A-202ENST00000562754 KLHL32Q96NJ5 620 aa16.73■□□□□ 0.27
VPS4A-202ENST00000562754 TBL1YQ9BQ87 522 aa16.73■□□□□ 0.27
VPS4A-202ENST00000562754 FSD1LQ9BXM9 530 aa16.73■□□□□ 0.27
VPS4A-202ENST00000562754 OSBPL1AQ9BXW6 950 aa16.73■□□□□ 0.27
VPS4A-202ENST00000562754 MKRN2Q9H000 416 aaKnown RBP16.73■□□□□ 0.27
VPS4A-202ENST00000562754 SUV39H2Q9H5I1 410 aa16.73■□□□□ 0.27
VPS4A-202ENST00000562754 FBRSQ9HAH7 460 aa16.73■□□□□ 0.27
VPS4A-202ENST00000562754 GDF3Q9NR23 364 aa16.73■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms