RNA–Protein interactions for RNA: ENST00000562747.1

CDT1-202, Transcript of chromatin licensing and DNA replication factor 1, humanhuman

TSL 2

Gene CDT1, Length 735 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDT1-202ENST00000562747 VSIG1Q86XK7 387 aa16.79■□□□□ 0.28
CDT1-202ENST00000562747 LRRC49Q8IUZ0 686 aa16.79■□□□□ 0.28
CDT1-202ENST00000562747 TMEM139Q8IV31 216 aa16.79■□□□□ 0.28
CDT1-202ENST00000562747 RHOT1Q8IXI2 618 aa16.79■□□□□ 0.28
CDT1-202ENST00000562747 ZNF599Q96NL3 588 aa16.79■□□□□ 0.28
CDT1-202ENST00000562747 PREBQ9HCU5 417 aa16.79■□□□□ 0.28
CDT1-202ENST00000562747 KLHL11Q9NVR0 708 aa16.79■□□□□ 0.28
CDT1-202ENST00000562747 LHX3Q9UBR4 397 aa16.79■□□□□ 0.28
CDT1-202ENST00000562747 IPO11Q9UI26 975 aaKnown RBP16.79■□□□□ 0.28
CDT1-202ENST00000562747 PLXNA2O75051 1894 aa16.79■□□□□ 0.28
CDT1-202ENST00000562747 TBC1D3DA0A087WVF3 549 aa16.78■□□□□ 0.28
CDT1-202ENST00000562747 TBC1D3IA0A087WXS9 549 aa16.78■□□□□ 0.28
CDT1-202ENST00000562747 TBC1D3EA0A087X179 549 aa16.78■□□□□ 0.28
CDT1-202ENST00000562747 TBC1D3KA0A087X1G2 549 aa16.78■□□□□ 0.28
CDT1-202ENST00000562747 A0A1W2PPC4 97 aa16.78■□□□□ 0.28
CDT1-202ENST00000562747 TBC1D3FA6NER0 549 aaPredicted RBP16.78■□□□□ 0.28
CDT1-202ENST00000562747 TBC1D3LB9A6J9 549 aa16.78■□□□□ 0.28
CDT1-202ENST00000562747 RNF103O00237 685 aa16.78■□□□□ 0.28
CDT1-202ENST00000562747 KRIT1O00522 736 aa16.78■□□□□ 0.28
CDT1-202ENST00000562747 SPOPO43791 374 aa16.78■□□□□ 0.28
CDT1-202ENST00000562747 PALMO75781 387 aa16.78■□□□□ 0.28
CDT1-202ENST00000562747 TBC1D3HP0C7X1 549 aa16.78■□□□□ 0.28
CDT1-202ENST00000562747 COMTP21964 271 aa16.78■□□□□ 0.28
CDT1-202ENST00000562747 KDELR1P24390 212 aa16.78■□□□□ 0.28
CDT1-202ENST00000562747 NEK3P51956 506 aa16.78■□□□□ 0.28
CDT1-202ENST00000562747 GRM3Q14832 879 aa16.78■□□□□ 0.28
CDT1-202ENST00000562747 PAFAH1B3Q15102 231 aaKnown RBP16.78■□□□□ 0.28
CDT1-202ENST00000562747 ZNF805Q5CZA5 627 aa16.78■□□□□ 0.28
CDT1-202ENST00000562747 TMCO4Q5TGY1 634 aa16.78■□□□□ 0.28
CDT1-202ENST00000562747 TBC1D3GQ6DHY5 549 aa16.78■□□□□ 0.28
CDT1-202ENST00000562747 TBC1D3CQ6IPX1 549 aa16.78■□□□□ 0.28
CDT1-202ENST00000562747 NEK5Q6P3R8 708 aa16.78■□□□□ 0.28
CDT1-202ENST00000562747 ARHGAP36Q6ZRI8 547 aa16.78■□□□□ 0.28
CDT1-202ENST00000562747 TMPRSS7Q7RTY8 843 aa16.78■□□□□ 0.28
CDT1-202ENST00000562747 TP53INP2Q8IXH6 220 aa16.78■□□□□ 0.28
CDT1-202ENST00000562747 TBC1D3Q8IZP1 549 aaPredicted RBP16.78■□□□□ 0.28
CDT1-202ENST00000562747 NETO2Q8NC67 525 aa16.78■□□□□ 0.28
CDT1-202ENST00000562747 OR6K2Q8NGY2 324 aa16.78■□□□□ 0.28
CDT1-202ENST00000562747 PCDH19Q8TAB3 1148 aa16.78■□□□□ 0.28
CDT1-202ENST00000562747 RAPGEF5Q92565 580 aa16.78■□□□□ 0.28
CDT1-202ENST00000562747 CPEB1Q9BZB8 566 aaKnown RBP16.78■□□□□ 0.28
CDT1-202ENST00000562747 DDX56Q9NY93 547 aaKnown RBP16.78■□□□□ 0.28
CDT1-202ENST00000562747 SNX11Q9Y5W9 270 aa16.78■□□□□ 0.28
CDT1-202ENST00000562747 GOLGA8CPA6NN73 597 aa16.77■□□□□ 0.28
CDT1-202ENST00000562747 BTNL10A8MVZ5 291 aa16.77■□□□□ 0.28
CDT1-202ENST00000562747 FLRT2O43155 660 aa16.77■□□□□ 0.28
CDT1-202ENST00000562747 LATO43561 262 aa16.77■□□□□ 0.28
CDT1-202ENST00000562747 BUB1BO60566 1050 aaPredicted RBP16.77■□□□□ 0.28
CDT1-202ENST00000562747 GKP32189 559 aa16.77■□□□□ 0.28
CDT1-202ENST00000562747 NUDT1P36639 197 aa16.77■□□□□ 0.28
CDT1-202ENST00000562747 CSNK1DP48730 415 aa16.77■□□□□ 0.28
CDT1-202ENST00000562747 GSDMDP57764 484 aa16.77■□□□□ 0.28
CDT1-202ENST00000562747 TAS2R38P59533 333 aa16.77■□□□□ 0.28
CDT1-202ENST00000562747 KIF19Q2TAC6 998 aa16.77■□□□□ 0.28
CDT1-202ENST00000562747 NCBP2-AS2Q69YL0 99 aa16.77■□□□□ 0.28
CDT1-202ENST00000562747 IL27RAQ6UWB1 636 aa16.77■□□□□ 0.28
CDT1-202ENST00000562747 TRIM69Q86WT6 500 aa16.77■□□□□ 0.28
CDT1-202ENST00000562747 ATPAF2Q8N5M1 289 aa16.77■□□□□ 0.28
CDT1-202ENST00000562747 RHBDD1Q8TEB9 315 aa16.77■□□□□ 0.28
CDT1-202ENST00000562747 HNRNPLLQ8WVV9 542 aaKnown RBP16.77■□□□□ 0.28
CDT1-202ENST00000562747 VOPP1Q96AW1 172 aa16.77■□□□□ 0.28
CDT1-202ENST00000562747 ORAI3Q9BRQ5 295 aa16.77■□□□□ 0.28
CDT1-202ENST00000562747 CINPQ9BW66 212 aaPredicted RBP16.77■□□□□ 0.28
CDT1-202ENST00000562747 TFR2Q9UP52 801 aa16.77■□□□□ 0.28
CDT1-202ENST00000562747 REXO2Q9Y3B8 237 aaKnown RBP16.77■□□□□ 0.28
CDT1-202ENST00000562747 PCDHGB2Q9Y5G2 931 aa16.77■□□□□ 0.28
CDT1-202ENST00000562747 ALG6Q9Y672 507 aa16.77■□□□□ 0.28
CDT1-202ENST00000562747 ACACAQ13085 2346 aa16.76■□□□□ 0.27
CDT1-202ENST00000562747 LRRD1A4D1F6 860 aa16.76■□□□□ 0.27
CDT1-202ENST00000562747 RCCD1A6NED2 376 aa16.76■□□□□ 0.27
CDT1-202ENST00000562747 PJA2O43164 708 aa16.76■□□□□ 0.27
CDT1-202ENST00000562747 PSTPIP1O43586 416 aa16.76■□□□□ 0.27
CDT1-202ENST00000562747 MFSD11O43934 449 aa16.76■□□□□ 0.27
CDT1-202ENST00000562747 MAFKO60675 156 aa16.76■□□□□ 0.27
CDT1-202ENST00000562747 UGT2B4P06133 528 aa16.76■□□□□ 0.27
CDT1-202ENST00000562747 ADRB3P13945 408 aa16.76■□□□□ 0.27
CDT1-202ENST00000562747 RENBPP51606 427 aa16.76■□□□□ 0.27
CDT1-202ENST00000562747 AFF3P51826 1226 aaKnown RBP16.76■□□□□ 0.27
CDT1-202ENST00000562747 VAV2P52735 878 aa16.76■□□□□ 0.27
CDT1-202ENST00000562747 NSUN2Q08J23 767 aaKnown RBP eCLIP16.76■□□□□ 0.27
CDT1-202ENST00000562747 LBRQ14739 615 aaKnown RBP16.76■□□□□ 0.27
CDT1-202ENST00000562747 C11orf63Q6NUN7 778 aa16.76■□□□□ 0.27
CDT1-202ENST00000562747 FBXL19Q6PCT2 694 aa16.76■□□□□ 0.27
CDT1-202ENST00000562747 GDPD4Q6W3E5 623 aa16.76■□□□□ 0.27
CDT1-202ENST00000562747 PARS2Q7L3T8 475 aaKnown RBP16.76■□□□□ 0.27
CDT1-202ENST00000562747 PRPF39Q86UA1 669 aaKnown RBP16.76■□□□□ 0.27
CDT1-202ENST00000562747 TXLNBQ8N3L3 684 aa16.76■□□□□ 0.27
CDT1-202ENST00000562747 RAB7BQ96AH8 199 aa16.76■□□□□ 0.27
CDT1-202ENST00000562747 EXOC2Q96KP1 924 aa16.76■□□□□ 0.27
CDT1-202ENST00000562747 BBC3Q96PG8 261 aaPredicted RBP16.76■□□□□ 0.27
CDT1-202ENST00000562747 RNF157Q96PX1 679 aa16.76■□□□□ 0.27
CDT1-202ENST00000562747 PSKH2Q96QS6 385 aa16.76■□□□□ 0.27
CDT1-202ENST00000562747 TM9SF3Q9HD45 589 aa16.76■□□□□ 0.27
CDT1-202ENST00000562747 SEPT3Q9UH03 358 aa16.76■□□□□ 0.27
CDT1-202ENST00000562747 GCN1Q92616 2671 aaKnown RBP16.75■□□□□ 0.27
CDT1-202ENST00000562747 FAM149AA5PLN7 773 aa16.75■□□□□ 0.27
CDT1-202ENST00000562747 C3orf70A6NLC5 250 aaPredicted RBP16.75■□□□□ 0.27
CDT1-202ENST00000562747 C16orf96A6NNT2 1141 aa16.75■□□□□ 0.27
CDT1-202ENST00000562747 KCNK3O14649 394 aa16.75■□□□□ 0.27
CDT1-202ENST00000562747 AP1G1O43747 822 aa16.75■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms