RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 LRRC73Q5JTD7 316 aa22■■□□□ 1.11
SNX1-210ENST00000560260 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP22■■□□□ 1.11
SNX1-210ENST00000560260 ERN2Q76MJ5 926 aaKnown RBP22■■□□□ 1.11
SNX1-210ENST00000560260 PRPF39Q86UA1 669 aaKnown RBP22■■□□□ 1.11
SNX1-210ENST00000560260 CREG2Q8IUH2 290 aa22■■□□□ 1.11
SNX1-210ENST00000560260 CCDC110Q8TBZ0 833 aa22■■□□□ 1.11
SNX1-210ENST00000560260 MAIP1Q8WWC4 291 aa22■■□□□ 1.11
SNX1-210ENST00000560260 TADA1Q96BN2 335 aa22■■□□□ 1.11
SNX1-210ENST00000560260 ECHDC3Q96DC8 303 aa22■■□□□ 1.11
SNX1-210ENST00000560260 IMP4Q96G21 291 aaKnown RBP22■■□□□ 1.11
SNX1-210ENST00000560260 CAPZA3Q96KX2 299 aa22■■□□□ 1.11
SNX1-210ENST00000560260 OMDQ99983 421 aa22■■□□□ 1.11
SNX1-210ENST00000560260 GORASP1Q9BQQ3 440 aa22■■□□□ 1.11
SNX1-210ENST00000560260 HDAC8Q9BY41 377 aa22■■□□□ 1.11
SNX1-210ENST00000560260 KCNH6Q9H252 994 aa22■■□□□ 1.11
SNX1-210ENST00000560260 SUV39H2Q9H5I1 410 aa22■■□□□ 1.11
SNX1-210ENST00000560260 FZD4Q9ULV1 537 aa22■■□□□ 1.11
SNX1-210ENST00000560260 DMDP11532 3685 aa21.99■■□□□ 1.11
SNX1-210ENST00000560260 PDE2AO00408 941 aaPredicted RBP21.99■■□□□ 1.11
SNX1-210ENST00000560260 HTRA2O43464 458 aaPredicted RBP21.99■■□□□ 1.11
SNX1-210ENST00000560260 SERPINA4P29622 427 aa21.99■■□□□ 1.11
SNX1-210ENST00000560260 CD6P30203 668 aa21.99■■□□□ 1.11
SNX1-210ENST00000560260 CD86P42081 329 aa21.99■■□□□ 1.11
SNX1-210ENST00000560260 ADPRHP54922 357 aa21.99■■□□□ 1.11
SNX1-210ENST00000560260 GRM3Q14832 879 aa21.99■■□□□ 1.11
SNX1-210ENST00000560260 KCTD19Q17RG1 926 aaPredicted RBP21.99■■□□□ 1.11
SNX1-210ENST00000560260 TTC27Q6P3X3 843 aa21.99■■□□□ 1.11
SNX1-210ENST00000560260 DRICH1Q6PGQ1 229 aaPredicted RBP21.99■■□□□ 1.11
SNX1-210ENST00000560260 KBTBD6Q86V97 674 aa21.99■■□□□ 1.11
SNX1-210ENST00000560260 SPATA22Q8NHS9 363 aa21.99■■□□□ 1.11
SNX1-210ENST00000560260 RTP4Q96DX8 246 aa21.99■■□□□ 1.11
SNX1-210ENST00000560260 PPP1R16AQ96I34 528 aa21.99■■□□□ 1.11
SNX1-210ENST00000560260 SPACA7Q96KW9 195 aa21.99■■□□□ 1.11
SNX1-210ENST00000560260 ZNF641Q96N77 438 aaPredicted RBP21.99■■□□□ 1.11
SNX1-210ENST00000560260 SPATA13Q96N96 652 aa21.99■■□□□ 1.11
SNX1-210ENST00000560260 RBM15Q96T37 977 aaKnown RBP eCLIP21.99■■□□□ 1.11
SNX1-210ENST00000560260 VAT1Q99536 393 aa21.99■■□□□ 1.11
SNX1-210ENST00000560260 SLC25A51Q9H1U9 297 aa21.99■■□□□ 1.11
SNX1-210ENST00000560260 DKK3Q9UBP4 350 aa21.99■■□□□ 1.11
SNX1-210ENST00000560260 MYO15AQ9UKN7 3530 aa21.99■■□□□ 1.11
SNX1-210ENST00000560260 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP21.98■■□□□ 1.11
SNX1-210ENST00000560260 C10orf142B7Z368 130 aa21.98■■□□□ 1.11
SNX1-210ENST00000560260 ADRB3P13945 408 aa21.98■■□□□ 1.11
SNX1-210ENST00000560260 TIMP2P16035 220 aa21.98■■□□□ 1.11
SNX1-210ENST00000560260 ITIH2P19823 946 aa21.98■■□□□ 1.11
SNX1-210ENST00000560260 KCNJ1P48048 391 aa21.98■■□□□ 1.11
SNX1-210ENST00000560260 NEK3P51956 506 aa21.98■■□□□ 1.11
SNX1-210ENST00000560260 ANKRD20A2Q5SQ80 823 aa21.98■■□□□ 1.11
SNX1-210ENST00000560260 ANKRD20A1Q5TYW2 823 aa21.98■■□□□ 1.11
SNX1-210ENST00000560260 ANKRD20A3Q5VUR7 823 aa21.98■■□□□ 1.11
SNX1-210ENST00000560260 PID1Q7Z2X4 250 aa21.98■■□□□ 1.11
SNX1-210ENST00000560260 PRUNE1Q86TP1 453 aa21.98■■□□□ 1.11
SNX1-210ENST00000560260 TDRD1Q9BXT4 1180 aaKnown RBP21.98■■□□□ 1.11
SNX1-210ENST00000560260 DYRK4Q9NR20 520 aa21.98■■□□□ 1.11
SNX1-210ENST00000560260 ITM2BQ9Y287 266 aa21.98■■□□□ 1.11
SNX1-210ENST00000560260 HCN4Q9Y3Q4 1203 aa21.98■■□□□ 1.11
SNX1-210ENST00000560260 RAI2Q9Y5P3 530 aa21.98■■□□□ 1.11
SNX1-210ENST00000560260 CFAP69A5D8W1 941 aa21.97■■□□□ 1.11
SNX1-210ENST00000560260 C5orf60A6NFR6 353 aa21.97■■□□□ 1.11
SNX1-210ENST00000560260 PLRG1O43660 514 aaKnown RBP21.97■■□□□ 1.11
SNX1-210ENST00000560260 FZD6O60353 706 aa21.97■■□□□ 1.11
SNX1-210ENST00000560260 SOCS5O75159 536 aa21.97■■□□□ 1.11
SNX1-210ENST00000560260 MT-CYBP00156 380 aaPredicted RBP21.97■■□□□ 1.11
SNX1-210ENST00000560260 PRKCGP05129 697 aa21.97■■□□□ 1.11
SNX1-210ENST00000560260 OXTRP30559 389 aa21.97■■□□□ 1.11
SNX1-210ENST00000560260 CYP1B1Q16678 543 aa21.97■■□□□ 1.11
SNX1-210ENST00000560260 ZSCAN30Q86W11 494 aa21.97■■□□□ 1.11
SNX1-210ENST00000560260 GLIS1Q8NBF1 620 aa21.97■■□□□ 1.11
SNX1-210ENST00000560260 OXNAD1Q96HP4 312 aaPredicted RBP21.97■■□□□ 1.11
SNX1-210ENST00000560260 GPR174Q9BXC1 333 aa21.97■■□□□ 1.11
SNX1-210ENST00000560260 BTBD1Q9H0C5 482 aa21.97■■□□□ 1.11
SNX1-210ENST00000560260 GBA3Q9H227 469 aa21.97■■□□□ 1.11
SNX1-210ENST00000560260 RSPH14Q9UHP6 348 aa21.97■■□□□ 1.11
SNX1-210ENST00000560260 GGT7Q9UJ14 662 aa21.97■■□□□ 1.11
SNX1-210ENST00000560260 TRHDEQ9UKU6 1024 aa21.97■■□□□ 1.11
SNX1-210ENST00000560260 NCKAP1Q9Y2A7 1128 aa21.97■■□□□ 1.11
SNX1-210ENST00000560260 ABCA7Q8IZY2 2146 aa21.96■■□□□ 1.11
SNX1-210ENST00000560260 SLC7A4O43246 635 aa21.96■■□□□ 1.11
SNX1-210ENST00000560260 PRLP01236 227 aa21.96■■□□□ 1.11
SNX1-210ENST00000560260 ITGAVP06756 1048 aa21.96■■□□□ 1.11
SNX1-210ENST00000560260 PDHA1P08559 390 aa21.96■■□□□ 1.11
SNX1-210ENST00000560260 SERPINF2P08697 491 aa21.96■■□□□ 1.11
SNX1-210ENST00000560260 ETS1P14921 441 aa21.96■■□□□ 1.11
SNX1-210ENST00000560260 CES1P23141 567 aa21.96■■□□□ 1.11
SNX1-210ENST00000560260 PSMB4P28070 264 aa21.96■■□□□ 1.11
SNX1-210ENST00000560260 CNR2P34972 360 aa21.96■■□□□ 1.11
SNX1-210ENST00000560260 PLK5Q496M5 336 aa21.96■■□□□ 1.11
SNX1-210ENST00000560260 KDELC1Q6UW63 502 aa21.96■■□□□ 1.11
SNX1-210ENST00000560260 DEFB119Q8N690 84 aa21.96■■□□□ 1.11
SNX1-210ENST00000560260 C12orf50Q8NA57 414 aaPredicted RBP21.96■■□□□ 1.11
SNX1-210ENST00000560260 OR14C36Q8NHC7 312 aa21.96■■□□□ 1.11
SNX1-210ENST00000560260 ATOH1Q92858 354 aaPredicted RBP21.96■■□□□ 1.11
SNX1-210ENST00000560260 SMIM14Q96QK8 99 aa21.96■■□□□ 1.11
SNX1-210ENST00000560260 FCRL5Q96RD9 977 aa21.96■■□□□ 1.11
SNX1-210ENST00000560260 DUSP15Q9H1R2 295 aaPredicted RBP21.96■■□□□ 1.11
SNX1-210ENST00000560260 C6orf106Q9H6K1 298 aaPredicted RBP21.96■■□□□ 1.11
SNX1-210ENST00000560260 SGK2Q9HBY8 427 aa21.96■■□□□ 1.11
SNX1-210ENST00000560260 HAUS2Q9NVX0 235 aa21.96■■□□□ 1.11
SNX1-210ENST00000560260 ZNF148Q9UQR1 794 aa21.96■■□□□ 1.11
SNX1-210ENST00000560260 TNRC6BQ9UPQ9 1833 aaKnown RBP21.95■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms