RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 PAX3P23760 479 aa10.72□□□□□ -0.69
CUX1-217ENST00000558836 EPHA3P29320 983 aa10.72□□□□□ -0.69
CUX1-217ENST00000558836 RAB10P61026 200 aa10.72□□□□□ -0.69
CUX1-217ENST00000558836 ARL13AQ5H913 290 aaPredicted RBP10.72□□□□□ -0.69
CUX1-217ENST00000558836 RALGPS1Q5JS13 557 aa10.72□□□□□ -0.69
CUX1-217ENST00000558836 SIRPB2Q5JXA9 342 aa10.72□□□□□ -0.69
CUX1-217ENST00000558836 SNX30Q5VWJ9 437 aa10.72□□□□□ -0.69
CUX1-217ENST00000558836 EP400NLQ6ZTU2 488 aa10.72□□□□□ -0.69
CUX1-217ENST00000558836 OR13J1Q8NGT2 312 aa10.72□□□□□ -0.69
CUX1-217ENST00000558836 HDAC10Q969S8 669 aa10.72□□□□□ -0.69
CUX1-217ENST00000558836 OLFM1Q99784 485 aa10.72□□□□□ -0.69
CUX1-217ENST00000558836 TSEN34Q9BSV6 310 aaKnown RBP10.72□□□□□ -0.69
CUX1-217ENST00000558836 RNPEPL1Q9HAU8 725 aa10.72□□□□□ -0.69
CUX1-217ENST00000558836 CYP4F11Q9HBI6 524 aa10.72□□□□□ -0.69
CUX1-217ENST00000558836 NOP53Q9NZM5 478 aaKnown RBP10.72□□□□□ -0.69
CUX1-217ENST00000558836 TAGLN3Q9UI15 199 aa10.72□□□□□ -0.69
CUX1-217ENST00000558836 FNDC3AQ9Y2H6 1198 aaKnown RBP10.72□□□□□ -0.69
CUX1-217ENST00000558836 TRIM17Q9Y577 477 aa10.72□□□□□ -0.69
CUX1-217ENST00000558836 SLC38A8A6NNN8 435 aa10.72□□□□□ -0.69
CUX1-217ENST00000558836 CSPG5O95196 566 aa10.72□□□□□ -0.69
CUX1-217ENST00000558836 PIGNO95427 931 aa10.72□□□□□ -0.69
CUX1-217ENST00000558836 ARSAP15289 507 aa10.72□□□□□ -0.69
CUX1-217ENST00000558836 MAGEA11P43364 429 aa10.72□□□□□ -0.69
CUX1-217ENST00000558836 HARS2P49590 506 aaKnown RBP10.72□□□□□ -0.69
CUX1-217ENST00000558836 SGSHP51688 502 aa10.72□□□□□ -0.69
CUX1-217ENST00000558836 NDST2P52849 883 aa10.72□□□□□ -0.69
CUX1-217ENST00000558836 SLC12A1Q13621 1099 aa10.72□□□□□ -0.69
CUX1-217ENST00000558836 PTPRRQ15256 657 aa10.72□□□□□ -0.69
CUX1-217ENST00000558836 RABGAP1LQ5R372 815 aa10.72□□□□□ -0.69
CUX1-217ENST00000558836 ARHGAP18Q8N392 663 aa10.72□□□□□ -0.69
CUX1-217ENST00000558836 ARRDC2Q8TBH0 407 aa10.72□□□□□ -0.69
CUX1-217ENST00000558836 HEXDCQ8WVB3 486 aa10.72□□□□□ -0.69
CUX1-217ENST00000558836 SEPT8Q92599 483 aa10.72□□□□□ -0.69
CUX1-217ENST00000558836 MARK4Q96L34 752 aa10.72□□□□□ -0.69
CUX1-217ENST00000558836 TSNARE1Q96NA8 513 aa10.72□□□□□ -0.69
CUX1-217ENST00000558836 NUF2Q9BZD4 464 aa10.72□□□□□ -0.69
CUX1-217ENST00000558836 CLIC5Q9NZA1 410 aa10.72□□□□□ -0.69
CUX1-217ENST00000558836 IL37Q9NZH6 218 aa10.72□□□□□ -0.69
CUX1-217ENST00000558836 MARCH4Q9P2E8 410 aaPredicted RBP10.72□□□□□ -0.69
CUX1-217ENST00000558836 ZNF212Q9UDV6 495 aa10.72□□□□□ -0.69
CUX1-217ENST00000558836 PACSIN3Q9UKS6 424 aa10.72□□□□□ -0.69
CUX1-217ENST00000558836 PCDHB12Q9Y5F1 795 aa10.72□□□□□ -0.69
CUX1-217ENST00000558836 ZFP37Q9Y6Q3 630 aaPredicted RBP10.72□□□□□ -0.69
CUX1-217ENST00000558836 KIAA0100Q14667 2235 aaKnown RBP10.72□□□□□ -0.69
CUX1-217ENST00000558836 FAM92AA1XBS5 289 aa10.71□□□□□ -0.69
CUX1-217ENST00000558836 SPECC1L-ADORA2AF8WAN1 911 aa10.71□□□□□ -0.69
CUX1-217ENST00000558836 DLX3O60479 287 aa10.71□□□□□ -0.69
CUX1-217ENST00000558836 RTN3O95197 1032 aaPredicted RBP10.71□□□□□ -0.69
CUX1-217ENST00000558836 TPBGLP0DKB5 382 aa10.71□□□□□ -0.69
CUX1-217ENST00000558836 HNRNPLP14866 589 aaKnown RBP eCLIP10.71□□□□□ -0.696e-8■■■■■ 28.9
CUX1-217ENST00000558836 TACR2P21452 398 aa10.71□□□□□ -0.69
CUX1-217ENST00000558836 CD151P48509 253 aa10.71□□□□□ -0.69
CUX1-217ENST00000558836 ALDH7A1P49419 539 aaKnown RBP10.71□□□□□ -0.69
CUX1-217ENST00000558836 CDK7P50613 346 aa10.71□□□□□ -0.69
CUX1-217ENST00000558836 SLC12A2P55011 1212 aa10.71□□□□□ -0.69
CUX1-217ENST00000558836 LBRQ14739 615 aaKnown RBP10.71□□□□□ -0.69
CUX1-217ENST00000558836 C16orf59Q7L2K0 433 aa10.71□□□□□ -0.69
CUX1-217ENST00000558836 NPAS4Q8IUM7 802 aa10.71□□□□□ -0.69
CUX1-217ENST00000558836 KLHDC8BQ8IXV7 354 aa10.71□□□□□ -0.69
CUX1-217ENST00000558836 OR6Y1Q8NGX8 325 aa10.71□□□□□ -0.69
CUX1-217ENST00000558836 SPPL2BQ8TCT7 592 aa10.71□□□□□ -0.69
CUX1-217ENST00000558836 WBP2Q969T9 261 aa10.71□□□□□ -0.69
CUX1-217ENST00000558836 TBATAQ96M53 351 aa10.71□□□□□ -0.69
CUX1-217ENST00000558836 TUBB6Q9BUF5 446 aa10.71□□□□□ -0.69
CUX1-217ENST00000558836 EBF2Q9HAK2 575 aa10.71□□□□□ -0.69
CUX1-217ENST00000558836 SMPD4Q9NXE4 827 aa10.71□□□□□ -0.69
CUX1-217ENST00000558836 ZDHHC2Q9UIJ5 367 aa10.71□□□□□ -0.69
CUX1-217ENST00000558836 IGLV3-10A0A075B6K4 115 aa10.71□□□□□ -0.69
CUX1-217ENST00000558836 WASH4PA8MWX3 477 aa10.71□□□□□ -0.69
CUX1-217ENST00000558836 ZBTB14O43829 449 aa10.71□□□□□ -0.69
CUX1-217ENST00000558836 ZNF189O75820 626 aaPredicted RBP10.71□□□□□ -0.69
CUX1-217ENST00000558836 SEC24AO95486 1093 aa10.71□□□□□ -0.69
CUX1-217ENST00000558836 HTR7P34969 479 aa10.71□□□□□ -0.69
CUX1-217ENST00000558836 BFSP2Q13515 415 aa10.71□□□□□ -0.69
CUX1-217ENST00000558836 SERINC3Q13530 473 aa10.71□□□□□ -0.69
CUX1-217ENST00000558836 TMEM198Q66K66 360 aa10.71□□□□□ -0.69
CUX1-217ENST00000558836 KIAA1841Q6NSI8 718 aa10.71□□□□□ -0.69
CUX1-217ENST00000558836 LRRC8EQ6NSJ5 796 aa10.71□□□□□ -0.69
CUX1-217ENST00000558836 PIM3Q86V86 326 aa10.71□□□□□ -0.69
CUX1-217ENST00000558836 AUTS2Q8WXX7 1259 aa10.71□□□□□ -0.69
CUX1-217ENST00000558836 NSMCE3Q96MG7 304 aa10.71□□□□□ -0.69
CUX1-217ENST00000558836 GPR78Q96P69 363 aa10.71□□□□□ -0.69
CUX1-217ENST00000558836 VN1R3Q9BXE9 311 aa10.71□□□□□ -0.69
CUX1-217ENST00000558836 XRN2Q9H0D6 950 aaKnown RBP eCLIP10.71□□□□□ -0.691e-6■■■■□ 21.6
CUX1-217ENST00000558836 C15orf41Q9Y2V0 281 aa10.71□□□□□ -0.69
CUX1-217ENST00000558836 XIRP2A4UGR9 3374 aa10.71□□□□□ -0.7
CUX1-217ENST00000558836 AP3B1O00203 1094 aa10.71□□□□□ -0.7
CUX1-217ENST00000558836 KLKB1P03952 638 aa10.71□□□□□ -0.7
CUX1-217ENST00000558836 TSPAN8P19075 237 aa10.71□□□□□ -0.7
CUX1-217ENST00000558836 KCNA5P22460 613 aa10.71□□□□□ -0.7
CUX1-217ENST00000558836 DNAJB2P25686 324 aa10.71□□□□□ -0.7
CUX1-217ENST00000558836 SERPINB5P36952 375 aa10.71□□□□□ -0.7
CUX1-217ENST00000558836 NRG1Q02297 640 aaPredicted RBP10.71□□□□□ -0.7
CUX1-217ENST00000558836 MSLNQ13421 630 aaPredicted RBP10.71□□□□□ -0.7
CUX1-217ENST00000558836 FRG1Q14331 258 aaKnown RBP10.71□□□□□ -0.7
CUX1-217ENST00000558836 RCN1Q15293 331 aa10.71□□□□□ -0.7
CUX1-217ENST00000558836 PDCD2Q16342 344 aaPredicted RBP10.71□□□□□ -0.7
CUX1-217ENST00000558836 SPOUT1Q5T280 376 aaKnown RBP10.71□□□□□ -0.7
CUX1-217ENST00000558836 TSTD2Q5T7W7 516 aa10.71□□□□□ -0.7
CUX1-217ENST00000558836 TMC7Q7Z402 723 aa10.71□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms