RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 SLC29A1Q99808 456 aa11□□□□□ -0.65
USP3-206ENST00000558157 ARMC1Q9NVT9 282 aa11□□□□□ -0.65
USP3-206ENST00000558157 ANK1P16157 1881 aa11□□□□□ -0.65
USP3-206ENST00000558157 SLCO1B7G3V0H7 640 aa10.99□□□□□ -0.65
USP3-206ENST00000558157 AVILO75366 819 aa10.99□□□□□ -0.65
USP3-206ENST00000558157 GMNNO75496 209 aa10.99□□□□□ -0.65
USP3-206ENST00000558157 MYO1DO94832 1006 aa10.99□□□□□ -0.65
USP3-206ENST00000558157 VAPBO95292 243 aa10.99□□□□□ -0.65
USP3-206ENST00000558157 HSPA4LO95757 839 aa10.99□□□□□ -0.65
USP3-206ENST00000558157 CTSHP09668 335 aa10.99□□□□□ -0.65
USP3-206ENST00000558157 HSPA1AP0DMV8 641 aaKnown RBP10.99□□□□□ -0.65
USP3-206ENST00000558157 HSPA1BP0DMV9 641 aaKnown RBP10.99□□□□□ -0.65
USP3-206ENST00000558157 HSPA8P11142 646 aaKnown RBP10.99□□□□□ -0.65
USP3-206ENST00000558157 CCL5P13501 91 aa10.99□□□□□ -0.65
USP3-206ENST00000558157 ENO3P13929 434 aaPredicted RBP10.99□□□□□ -0.65
USP3-206ENST00000558157 NELFEP18615 380 aaKnown RBP10.99□□□□□ -0.65
USP3-206ENST00000558157 TBXAS1P24557 533 aaPredicted RBP10.99□□□□□ -0.65
USP3-206ENST00000558157 POLR2BP30876 1174 aaKnown RBP10.99□□□□□ -0.65
USP3-206ENST00000558157 CA8P35219 290 aa10.99□□□□□ -0.65
USP3-206ENST00000558157 KRT6CP48668 564 aa10.99□□□□□ -0.65
USP3-206ENST00000558157 MRPS6P82932 125 aaKnown RBP10.99□□□□□ -0.65
USP3-206ENST00000558157 GNA12Q03113 381 aa10.99□□□□□ -0.65
USP3-206ENST00000558157 SNX17Q15036 470 aa10.99□□□□□ -0.65
USP3-206ENST00000558157 SF3B4Q15427 424 aaKnown RBP eCLIP10.99□□□□□ -0.652e-6■■■■□ 22.7
USP3-206ENST00000558157 TIGD2Q4W5G0 525 aa10.99□□□□□ -0.65
USP3-206ENST00000558157 MTX3Q5HYI7 312 aa10.99□□□□□ -0.65
USP3-206ENST00000558157 LMBRD2Q68DH5 695 aaPredicted RBP10.99□□□□□ -0.65
USP3-206ENST00000558157 CATSPER4Q7RTX7 472 aa10.99□□□□□ -0.65
USP3-206ENST00000558157 C11orf74Q86VG3 221 aa10.99□□□□□ -0.65
USP3-206ENST00000558157 ANKRD13BQ86YJ7 626 aa10.99□□□□□ -0.65
USP3-206ENST00000558157 HERC6Q8IVU3 1022 aa10.99□□□□□ -0.65
USP3-206ENST00000558157 BRSK2Q8IWQ3 736 aa10.99□□□□□ -0.65
USP3-206ENST00000558157 SPATA18Q8TC71 538 aa10.99□□□□□ -0.65
USP3-206ENST00000558157 MAGED4Q96JG8 741 aa10.99□□□□□ -0.65
USP3-206ENST00000558157 GLT1D1Q96MS3 346 aa10.99□□□□□ -0.65
USP3-206ENST00000558157 EBNA1BP2Q99848 306 aaKnown RBP10.99□□□□□ -0.65
USP3-206ENST00000558157 ADI1Q9BV57 179 aa10.99□□□□□ -0.65
USP3-206ENST00000558157 ZBTB26Q9HCK0 441 aa10.99□□□□□ -0.65
USP3-206ENST00000558157 PAK6Q9NQU5 681 aaPredicted RBP10.99□□□□□ -0.65
USP3-206ENST00000558157 THG1LQ9NWX6 298 aaKnown RBP10.99□□□□□ -0.65
USP3-206ENST00000558157 SAE1Q9UBE0 346 aaPredicted RBP10.99□□□□□ -0.65
USP3-206ENST00000558157 PACSIN3Q9UKS6 424 aa10.99□□□□□ -0.65
USP3-206ENST00000558157 TRAF6Q9Y4K3 522 aa10.99□□□□□ -0.65
USP3-206ENST00000558157 PCDHA11Q9Y5I1 949 aa10.99□□□□□ -0.65
USP3-206ENST00000558157 SNX13Q9Y5W8 968 aa10.99□□□□□ -0.65
USP3-206ENST00000558157 PTPRJQ12913 1337 aa10.99□□□□□ -0.65
USP3-206ENST00000558157 TMX2-CTNND1H3BSU7 103 aa10.99□□□□□ -0.65
USP3-206ENST00000558157 PLOD2O00469 737 aa10.99□□□□□ -0.65
USP3-206ENST00000558157 CFLARO15519 480 aa10.99□□□□□ -0.65
USP3-206ENST00000558157 MSI1O43347 362 aaKnown RBP10.99□□□□□ -0.65
USP3-206ENST00000558157 CHEK2O96017 543 aa10.99□□□□□ -0.65
USP3-206ENST00000558157 CALCAP01258 141 aa10.99□□□□□ -0.65
USP3-206ENST00000558157 TCEA1P23193 301 aaKnown RBP10.99□□□□□ -0.65
USP3-206ENST00000558157 HLCSP50747 726 aa10.99□□□□□ -0.65
USP3-206ENST00000558157 OSTNP61366 133 aa10.99□□□□□ -0.65
USP3-206ENST00000558157 CLDN10P78369 228 aa10.99□□□□□ -0.65
USP3-206ENST00000558157 MPP1Q00013 466 aa10.99□□□□□ -0.65
USP3-206ENST00000558157 DMPKQ09013 629 aa10.99□□□□□ -0.65
USP3-206ENST00000558157 MERTKQ12866 999 aa10.99□□□□□ -0.65
USP3-206ENST00000558157 SELENBP1Q13228 472 aa10.99□□□□□ -0.65
USP3-206ENST00000558157 NOMO1Q15155 1222 aa10.99□□□□□ -0.65
USP3-206ENST00000558157 SLC36A3Q495N2 470 aa10.99□□□□□ -0.65
USP3-206ENST00000558157 CAND1Q86VP6 1230 aaKnown RBP10.99□□□□□ -0.65
USP3-206ENST00000558157 LRRC49Q8IUZ0 686 aa10.99□□□□□ -0.65
USP3-206ENST00000558157 ZC3H7AQ8IWR0 971 aaKnown RBP10.99□□□□□ -0.65
USP3-206ENST00000558157 ELMOD1Q8N336 334 aa10.99□□□□□ -0.65
USP3-206ENST00000558157 TTC39CQ8N584 583 aa10.99□□□□□ -0.65
USP3-206ENST00000558157 ARRDC4Q8NCT1 418 aa10.99□□□□□ -0.65
USP3-206ENST00000558157 SEPT8Q92599 483 aa10.99□□□□□ -0.65
USP3-206ENST00000558157 SH3YL1Q96HL8 342 aaPredicted RBP10.99□□□□□ -0.65
USP3-206ENST00000558157 DEFB118Q96PH6 123 aa10.99□□□□□ -0.65
USP3-206ENST00000558157 CIB1Q99828 191 aa10.99□□□□□ -0.65
USP3-206ENST00000558157 SEMA6AQ9H2E6 1030 aa10.99□□□□□ -0.65
USP3-206ENST00000558157 RAD21L1Q9H4I0 556 aa10.99□□□□□ -0.65
USP3-206ENST00000558157 RSAD1Q9HA92 442 aa10.99□□□□□ -0.65
USP3-206ENST00000558157 RAB6BQ9NRW1 208 aa10.99□□□□□ -0.65
USP3-206ENST00000558157 TRMT13Q9NUP7 481 aaKnown RBP10.99□□□□□ -0.65
USP3-206ENST00000558157 MOCS1Q9NZB8 636 aa10.99□□□□□ -0.65
USP3-206ENST00000558157 CPSF3Q9UKF6 684 aaKnown RBP10.99□□□□□ -0.65
USP3-206ENST00000558157 TCAF1Q9Y4C2 921 aa10.99□□□□□ -0.65
USP3-206ENST00000558157 TRPV2Q9Y5S1 764 aa10.99□□□□□ -0.65
USP3-206ENST00000558157 NOTOA8MTQ0 251 aa10.98□□□□□ -0.65
USP3-206ENST00000558157 KPNA7A9QM74 516 aa10.98□□□□□ -0.65
USP3-206ENST00000558157 RNF103O00237 685 aa10.98□□□□□ -0.65
USP3-206ENST00000558157 HDAC3O15379 428 aa10.98□□□□□ -0.65
USP3-206ENST00000558157 SEC14L2O76054 403 aa10.98□□□□□ -0.65
USP3-206ENST00000558157 ALDOAP04075 364 aaKnown RBP10.98□□□□□ -0.65
USP3-206ENST00000558157 UGT2B4P06133 528 aa10.98□□□□□ -0.65
USP3-206ENST00000558157 VDRP11473 427 aa10.98□□□□□ -0.65
USP3-206ENST00000558157 TGM1P22735 817 aa10.98□□□□□ -0.65
USP3-206ENST00000558157 ARRB2P32121 409 aa10.98□□□□□ -0.65
USP3-206ENST00000558157 HPCAL1P37235 193 aa10.98□□□□□ -0.65
USP3-206ENST00000558157 DPP6P42658 865 aa10.98□□□□□ -0.65
USP3-206ENST00000558157 CRYBB1P53674 252 aaPredicted RBP10.98□□□□□ -0.65
USP3-206ENST00000558157 PRAMEP78395 509 aa10.98□□□□□ -0.65
USP3-206ENST00000558157 OGDHQ02218 1023 aa10.98□□□□□ -0.65
USP3-206ENST00000558157 CUL2Q13617 745 aa10.98□□□□□ -0.65
USP3-206ENST00000558157 KCTD8Q6ZWB6 473 aa10.98□□□□□ -0.65
USP3-206ENST00000558157 CHSY3Q70JA7 882 aa10.98□□□□□ -0.65
USP3-206ENST00000558157 TMEM192Q8IY95 271 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms