RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 ANKRD6Q9Y2G4 727 aa13.01□□□□□ -0.33
LDLR-207ENST00000558013 AAR2Q9Y312 384 aaKnown RBP13.01□□□□□ -0.33
LDLR-207ENST00000558013 C9JVG2 144 aa13□□□□□ -0.33
LDLR-207ENST00000558013 PPP6CO00743 305 aa13□□□□□ -0.33
LDLR-207ENST00000558013 RNASEH2AO75792 299 aaKnown RBP13□□□□□ -0.33
LDLR-207ENST00000558013 CCNCP24863 283 aa13□□□□□ -0.33
LDLR-207ENST00000558013 WNT3AP56704 352 aa13□□□□□ -0.33
LDLR-207ENST00000558013 ITKQ08881 620 aa13□□□□□ -0.33
LDLR-207ENST00000558013 RANBP10Q6VN20 620 aa13□□□□□ -0.33
LDLR-207ENST00000558013 SCD5Q86SK9 330 aa13□□□□□ -0.33
LDLR-207ENST00000558013 TMEM86AQ8N2M4 240 aa13□□□□□ -0.33
LDLR-207ENST00000558013 PPHLN1Q8NEY8 458 aaKnown RBP13□□□□□ -0.33
LDLR-207ENST00000558013 ATP6V1E2Q96A05 226 aa13□□□□□ -0.33
LDLR-207ENST00000558013 TRPC7Q9HCX4 862 aa13□□□□□ -0.33
LDLR-207ENST00000558013 TREX1Q9NSU2 369 aa13□□□□□ -0.33
LDLR-207ENST00000558013 GIMAP2Q9UG22 337 aa13□□□□□ -0.33
LDLR-207ENST00000558013 RIMS3Q9UJD0 308 aa13□□□□□ -0.33
LDLR-207ENST00000558013 PTCH2Q9Y6C5 1203 aa13□□□□□ -0.33
LDLR-207ENST00000558013 MATN3O15232 486 aa13□□□□□ -0.33
LDLR-207ENST00000558013 IRAK2O43187 625 aa13□□□□□ -0.33
LDLR-207ENST00000558013 CRTAMO95727 393 aa13□□□□□ -0.33
LDLR-207ENST00000558013 APOA4P06727 396 aa13□□□□□ -0.33
LDLR-207ENST00000558013 CCDC166P0CW27 439 aa13□□□□□ -0.33
LDLR-207ENST00000558013 CPB1P15086 417 aa13□□□□□ -0.33
LDLR-207ENST00000558013 ATP6V1B1P15313 513 aa13□□□□□ -0.33
LDLR-207ENST00000558013 NELFEP18615 380 aaKnown RBP13□□□□□ -0.33
LDLR-207ENST00000558013 FGFR3P22607 806 aa13□□□□□ -0.33
LDLR-207ENST00000558013 GPR15P49685 360 aa13□□□□□ -0.33
LDLR-207ENST00000558013 ARSDP51689 593 aa13□□□□□ -0.33
LDLR-207ENST00000558013 SLC5A3P53794 718 aa13□□□□□ -0.33
LDLR-207ENST00000558013 NME5P56597 212 aa13□□□□□ -0.33
LDLR-207ENST00000558013 MRPS6P82932 125 aaKnown RBP13□□□□□ -0.33
LDLR-207ENST00000558013 MAP2K5Q13163 448 aa13□□□□□ -0.33
LDLR-207ENST00000558013 TMEM207Q6UWW9 146 aa13□□□□□ -0.33
LDLR-207ENST00000558013 C16orf89Q6UX73 402 aa13□□□□□ -0.33
LDLR-207ENST00000558013 ST13P4Q8IZP2 240 aaPredicted RBP13□□□□□ -0.33
LDLR-207ENST00000558013 CPSF7Q8N684 471 aaKnown RBP13□□□□□ -0.33
LDLR-207ENST00000558013 NMD3Q96D46 503 aaKnown RBP13□□□□□ -0.33
LDLR-207ENST00000558013 AP5M1Q9H0R1 490 aa13□□□□□ -0.33
LDLR-207ENST00000558013 NOL6Q9H6R4 1146 aaKnown RBP13□□□□□ -0.33
LDLR-207ENST00000558013 SLC38A7Q9NVC3 462 aa13□□□□□ -0.33
LDLR-207ENST00000558013 PTGDR2Q9Y5Y4 395 aa13□□□□□ -0.33
LDLR-207ENST00000558013 E7ENX8 843 aa12.99□□□□□ -0.33
LDLR-207ENST00000558013 UBFD1O14562 309 aaKnown RBP12.99□□□□□ -0.33
LDLR-207ENST00000558013 ACOT8O14734 319 aa12.99□□□□□ -0.33
LDLR-207ENST00000558013 H2AFYO75367 372 aaKnown RBP12.99□□□□□ -0.33
LDLR-207ENST00000558013 HAPLN1P10915 354 aaPredicted RBP12.99□□□□□ -0.33
LDLR-207ENST00000558013 PCSK1P29120 753 aa12.99□□□□□ -0.33
LDLR-207ENST00000558013 CD52P31358 61 aa12.99□□□□□ -0.33
LDLR-207ENST00000558013 CD151P48509 253 aa12.99□□□□□ -0.33
LDLR-207ENST00000558013 CPT1AP50416 773 aa12.99□□□□□ -0.33
LDLR-207ENST00000558013 CHN2P52757 468 aa12.99□□□□□ -0.33
LDLR-207ENST00000558013 EIF4EBP2Q13542 120 aaPredicted RBP12.99□□□□□ -0.33
LDLR-207ENST00000558013 NRF1Q16656 503 aa12.99□□□□□ -0.33
LDLR-207ENST00000558013 FBXO48Q5FWF7 155 aa12.99□□□□□ -0.33
LDLR-207ENST00000558013 MORN1Q5T089 497 aa12.99□□□□□ -0.33
LDLR-207ENST00000558013 IL23RQ5VWK5 629 aa12.99□□□□□ -0.33
LDLR-207ENST00000558013 FAM171BQ6P995 826 aa12.99□□□□□ -0.33
LDLR-207ENST00000558013 CYP2R1Q6VVX0 501 aa12.99□□□□□ -0.33
LDLR-207ENST00000558013 CNTN4Q8IWV2 1026 aa12.99□□□□□ -0.33
LDLR-207ENST00000558013 RDH11Q8TC12 318 aa12.99□□□□□ -0.33
LDLR-207ENST00000558013 SPPL2BQ8TCT7 592 aa12.99□□□□□ -0.33
LDLR-207ENST00000558013 LRGUKQ96M69 825 aa12.99□□□□□ -0.33
LDLR-207ENST00000558013 TSGA13Q96PP4 275 aa12.99□□□□□ -0.33
LDLR-207ENST00000558013 NT5MQ9NPB1 228 aa12.99□□□□□ -0.33
LDLR-207ENST00000558013 DMAP1Q9NPF5 467 aaPredicted RBP12.99□□□□□ -0.33
LDLR-207ENST00000558013 HS3ST4Q9Y661 456 aa12.99□□□□□ -0.33
LDLR-207ENST00000558013 B4GALT3O60512 393 aa12.99□□□□□ -0.33
LDLR-207ENST00000558013 CNTN5O94779 1100 aa12.99□□□□□ -0.33
LDLR-207ENST00000558013 TBX18O95935 607 aa12.99□□□□□ -0.33
LDLR-207ENST00000558013 IGLV3-25P01717 112 aa12.99□□□□□ -0.33
LDLR-207ENST00000558013 SMIM18P0DKX4 95 aa12.99□□□□□ -0.33
LDLR-207ENST00000558013 GRIK1P39086 918 aa12.99□□□□□ -0.33
LDLR-207ENST00000558013 CDH13P55290 713 aa12.99□□□□□ -0.33
LDLR-207ENST00000558013 YBX1P67809 324 aaKnown RBP12.99□□□□□ -0.33
LDLR-207ENST00000558013 SLC10A7Q0GE19 358 aa12.99□□□□□ -0.33
LDLR-207ENST00000558013 GNASQ5JWF2 1037 aa12.99□□□□□ -0.33
LDLR-207ENST00000558013 SCN4BQ8IWT1 228 aa12.99□□□□□ -0.33
LDLR-207ENST00000558013 PGAM4Q8N0Y7 254 aa12.99□□□□□ -0.33
LDLR-207ENST00000558013 C2CD4AQ8NCU7 369 aaPredicted RBP12.99□□□□□ -0.33
LDLR-207ENST00000558013 EXT2Q93063 718 aa12.99□□□□□ -0.33
LDLR-207ENST00000558013 PARK7Q99497 189 aaKnown RBP12.99□□□□□ -0.33
LDLR-207ENST00000558013 EFCAB1Q9HAE3 211 aa12.99□□□□□ -0.33
LDLR-207ENST00000558013 MARCH4Q9P2E8 410 aaPredicted RBP12.99□□□□□ -0.33
LDLR-207ENST00000558013 IPO11Q9UI26 975 aaKnown RBP12.99□□□□□ -0.33
LDLR-207ENST00000558013 PRPF19Q9UMS4 504 aaKnown RBP12.99□□□□□ -0.33
LDLR-207ENST00000558013 TBC1D30Q9Y2I9 924 aa12.99□□□□□ -0.33
LDLR-207ENST00000558013 CRYL1Q9Y2S2 319 aa12.99□□□□□ -0.33
LDLR-207ENST00000558013 LRRC14BA6NHZ5 514 aa12.99□□□□□ -0.33
LDLR-207ENST00000558013 A8MT66 165 aa12.99□□□□□ -0.33
LDLR-207ENST00000558013 FBP2O00757 339 aa12.99□□□□□ -0.33
LDLR-207ENST00000558013 ANXA9O76027 345 aa12.99□□□□□ -0.33
LDLR-207ENST00000558013 ME2P23368 584 aa12.99□□□□□ -0.33
LDLR-207ENST00000558013 CD86P42081 329 aa12.99□□□□□ -0.33
LDLR-207ENST00000558013 SLC12A2P55011 1212 aa12.99□□□□□ -0.33
LDLR-207ENST00000558013 GRM2Q14416 872 aa12.99□□□□□ -0.33
LDLR-207ENST00000558013 CYHR1Q6ZMK1 362 aa12.99□□□□□ -0.33
LDLR-207ENST00000558013 PABPC5Q96DU9 382 aaKnown RBP12.99□□□□□ -0.33
LDLR-207ENST00000558013 SH3GL3Q99963 347 aa12.99□□□□□ -0.33
LDLR-207ENST00000558013 ARHGEF38Q9NXL2 777 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms