RNA–Protein interactions for RNA: ENST00000557548.1

TRAV28-201, Transcript of T cell receptor alpha variable 28 (pseudogene), humanhuman

BASIC

Gene TRAV28, Length 323 nt, Biotype TR V pseudogene.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV28-201ENST00000557548 ABCB1P08183 1280 aaPredicted RBP3.27□□□□□ -1.89
TRAV28-201ENST00000557548 HSP90AB1P08238 724 aaKnown RBP3.27□□□□□ -1.89
TRAV28-201ENST00000557548 SRPRAP08240 638 aaKnown RBP3.27□□□□□ -1.89
TRAV28-201ENST00000557548 TGFB3P10600 412 aa3.27□□□□□ -1.89
TRAV28-201ENST00000557548 ITGAXP20702 1163 aa3.27□□□□□ -1.89
TRAV28-201ENST00000557548 DRD4P21917 467 aa3.27□□□□□ -1.89
TRAV28-201ENST00000557548 CPT2P23786 658 aa3.27□□□□□ -1.89
TRAV28-201ENST00000557548 GRIA3P42263 894 aa3.27□□□□□ -1.89
TRAV28-201ENST00000557548 GABRB2P47870 512 aa3.27□□□□□ -1.89
TRAV28-201ENST00000557548 LIG4P49917 911 aa3.27□□□□□ -1.89
TRAV28-201ENST00000557548 CLCN3P51790 818 aa3.27□□□□□ -1.89
TRAV28-201ENST00000557548 RBP5P82980 135 aa3.27□□□□□ -1.89
TRAV28-201ENST00000557548 TFCP2Q12800 502 aa3.27□□□□□ -1.89
TRAV28-201ENST00000557548 OLIG2Q13516 323 aa3.27□□□□□ -1.89
TRAV28-201ENST00000557548 HIST2H2ACQ16777 129 aaPredicted RBP3.27□□□□□ -1.89
TRAV28-201ENST00000557548 USP39Q53GS9 565 aaKnown RBP3.27□□□□□ -1.89
TRAV28-201ENST00000557548 ZNF628Q5EBL2 1059 aa3.27□□□□□ -1.89
TRAV28-201ENST00000557548 CXorf66Q5JRM2 361 aaPredicted RBP3.27□□□□□ -1.89
TRAV28-201ENST00000557548 TMEM268Q5VZI3 342 aa3.27□□□□□ -1.89
TRAV28-201ENST00000557548 DCLRE1AQ6PJP8 1040 aa3.27□□□□□ -1.89
TRAV28-201ENST00000557548 VSTM1Q6UX27 236 aa3.27□□□□□ -1.89
TRAV28-201ENST00000557548 FAM43BQ6ZT52 329 aaPredicted RBP3.27□□□□□ -1.89
TRAV28-201ENST00000557548 SLC29A4Q7RTT9 530 aa3.27□□□□□ -1.89
TRAV28-201ENST00000557548 ZNF804AQ7Z570 1209 aa3.27□□□□□ -1.89
TRAV28-201ENST00000557548 PALM2Q8IXS6 379 aa3.27□□□□□ -1.89
TRAV28-201ENST00000557548 CHCHD4Q8N4Q1 142 aa3.27□□□□□ -1.89
TRAV28-201ENST00000557548 PAQR4Q8N4S7 273 aaPredicted RBP3.27□□□□□ -1.89
TRAV28-201ENST00000557548 PROKR1Q8TCW9 393 aa3.27□□□□□ -1.89
TRAV28-201ENST00000557548 ACTRT2Q8TDY3 377 aa3.27□□□□□ -1.89
TRAV28-201ENST00000557548 DUSP19Q8WTR2 217 aa3.27□□□□□ -1.89
TRAV28-201ENST00000557548 FAR1Q8WVX9 515 aa3.27□□□□□ -1.89
TRAV28-201ENST00000557548 NEU4Q8WWR8 484 aaPredicted RBP3.27□□□□□ -1.89
TRAV28-201ENST00000557548 EXTL1Q92935 676 aa3.27□□□□□ -1.89
TRAV28-201ENST00000557548 RMDN1Q96DB5 314 aa3.27□□□□□ -1.89
TRAV28-201ENST00000557548 DAZAP1Q96EP5 407 aaKnown RBP3.27□□□□□ -1.89
TRAV28-201ENST00000557548 CCDC17Q96LX7 622 aa3.27□□□□□ -1.89
TRAV28-201ENST00000557548 DGAT2Q96PD7 388 aa3.27□□□□□ -1.89
TRAV28-201ENST00000557548 FRG2BQ96QU4 278 aa3.27□□□□□ -1.89
TRAV28-201ENST00000557548 FIZ1Q96SL8 496 aa3.27□□□□□ -1.89
TRAV28-201ENST00000557548 MLST8Q9BVC4 326 aa3.27□□□□□ -1.89
TRAV28-201ENST00000557548 GATA5Q9BWX5 397 aaPredicted RBP3.27□□□□□ -1.89
TRAV28-201ENST00000557548 IFIH1Q9BYX4 1025 aaKnown RBP3.27□□□□□ -1.89
TRAV28-201ENST00000557548 PLEKHA4Q9H4M7 779 aa3.27□□□□□ -1.89
TRAV28-201ENST00000557548 PDZD7Q9H5P4 517 aa3.27□□□□□ -1.89
TRAV28-201ENST00000557548 OPA3Q9H6K4 179 aa3.27□□□□□ -1.89
TRAV28-201ENST00000557548 RANGRFQ9HD47 186 aaPredicted RBP3.27□□□□□ -1.89
TRAV28-201ENST00000557548 GAR1Q9NY12 217 aaKnown RBP3.27□□□□□ -1.89
TRAV28-201ENST00000557548 WSB2Q9NYS7 404 aaPredicted RBP3.27□□□□□ -1.89
TRAV28-201ENST00000557548 SEC63Q9UGP8 760 aaKnown RBP3.27□□□□□ -1.89
TRAV28-201ENST00000557548 FBXO40Q9UH90 709 aa3.27□□□□□ -1.89
TRAV28-201ENST00000557548 GTF3C4Q9UKN8 822 aa3.27□□□□□ -1.89
TRAV28-201ENST00000557548 PPIEQ9UNP9 301 aaKnown RBP3.27□□□□□ -1.89
TRAV28-201ENST00000557548 SLC8A2Q9UPR5 921 aa3.27□□□□□ -1.89
TRAV28-201ENST00000557548 TNFSF13BQ9Y275 285 aa3.27□□□□□ -1.89
TRAV28-201ENST00000557548 AAR2Q9Y312 384 aaKnown RBP3.27□□□□□ -1.89
TRAV28-201ENST00000557548 FAM96BQ9Y3D0 163 aa3.27□□□□□ -1.89
TRAV28-201ENST00000557548 CCL27Q9Y4X3 112 aa3.27□□□□□ -1.89
TRAV28-201ENST00000557548 SNX5Q9Y5X3 404 aa3.27□□□□□ -1.89
TRAV28-201ENST00000557548 SPATA31A5Q5VU36 1347 aa3.26□□□□□ -1.89
TRAV28-201ENST00000557548 SPATA31A6Q5VVP1 1343 aa3.26□□□□□ -1.89
TRAV28-201ENST00000557548 SPATA31A7Q8IWB4 1347 aa3.26□□□□□ -1.89
TRAV28-201ENST00000557548 SMTNL1A8MU46 457 aa3.26□□□□□ -1.89
TRAV28-201ENST00000557548 RRHO14718 337 aa3.26□□□□□ -1.89
TRAV28-201ENST00000557548 SCAMP1O15126 338 aa3.26□□□□□ -1.89
TRAV28-201ENST00000557548 PLSCR1O15162 318 aa3.26□□□□□ -1.89
TRAV28-201ENST00000557548 ADAMDEC1O15204 470 aa3.26□□□□□ -1.89
TRAV28-201ENST00000557548 SLC7A4O43246 635 aa3.26□□□□□ -1.89
TRAV28-201ENST00000557548 PAPSS1O43252 624 aaPredicted RBP3.26□□□□□ -1.89
TRAV28-201ENST00000557548 HCRTR2O43614 444 aa3.26□□□□□ -1.89
TRAV28-201ENST00000557548 SLC25A12O75746 678 aa3.26□□□□□ -1.89
TRAV28-201ENST00000557548 ATP5BP06576 529 aaKnown RBP3.26□□□□□ -1.89
TRAV28-201ENST00000557548 ST6GAL1P15907 406 aa3.26□□□□□ -1.89
TRAV28-201ENST00000557548 TMEM11P17152 192 aa3.26□□□□□ -1.89
TRAV28-201ENST00000557548 IFNAR1P17181 557 aa3.26□□□□□ -1.89
TRAV28-201ENST00000557548 KLRC2P26717 231 aa3.26□□□□□ -1.89
TRAV28-201ENST00000557548 PON1P27169 355 aa3.26□□□□□ -1.89
TRAV28-201ENST00000557548 SOX2P48431 317 aa3.26□□□□□ -1.89
TRAV28-201ENST00000557548 MRPS35P82673 323 aaKnown RBP3.26□□□□□ -1.89
TRAV28-201ENST00000557548 SLC18A2Q05940 514 aa3.26□□□□□ -1.89
TRAV28-201ENST00000557548 DDR1Q08345 913 aa3.26□□□□□ -1.89
TRAV28-201ENST00000557548 BFSP1Q12934 665 aa3.26□□□□□ -1.89
TRAV28-201ENST00000557548 GRIK3Q13003 919 aa3.26□□□□□ -1.89
TRAV28-201ENST00000557548 MTA1Q13330 715 aa3.26□□□□□ -1.89
TRAV28-201ENST00000557548 PPP2R5CQ13362 524 aa3.26□□□□□ -1.89
TRAV28-201ENST00000557548 GALNT3Q14435 633 aa3.26□□□□□ -1.89
TRAV28-201ENST00000557548 R3HDM1Q15032 1099 aaKnown RBP3.26□□□□□ -1.89
TRAV28-201ENST00000557548 ADIPOQQ15848 244 aa3.26□□□□□ -1.89
TRAV28-201ENST00000557548 PFKFB3Q16875 520 aaPredicted RBP3.26□□□□□ -1.89
TRAV28-201ENST00000557548 PLK5Q496M5 336 aa3.26□□□□□ -1.89
TRAV28-201ENST00000557548 ZNF805Q5CZA5 627 aa3.26□□□□□ -1.89
TRAV28-201ENST00000557548 IGSF11Q5DX21 431 aa3.26□□□□□ -1.89
TRAV28-201ENST00000557548 TBC1D9BQ66K14 1250 aa3.26□□□□□ -1.89
TRAV28-201ENST00000557548 KRT80Q6KB66 452 aa3.26□□□□□ -1.89
TRAV28-201ENST00000557548 FBXO42Q6P3S6 717 aa3.26□□□□□ -1.89
TRAV28-201ENST00000557548 CPLX2Q6PUV4 134 aaKnown RBP3.26□□□□□ -1.89
TRAV28-201ENST00000557548 LCTLQ6UWM7 567 aa3.26□□□□□ -1.89
TRAV28-201ENST00000557548 TRIM72Q6ZMU5 477 aa3.26□□□□□ -1.89
TRAV28-201ENST00000557548 CFAP77Q6ZQR2 320 aa3.26□□□□□ -1.89
TRAV28-201ENST00000557548 RHOUQ7L0Q8 258 aa3.26□□□□□ -1.89
TRAV28-201ENST00000557548 GET4Q7L5D6 327 aaPredicted RBP3.26□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms