RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 PMPCBO75439 489 aa12.78□□□□□ -0.36
SHMT2-229ENST00000557348 SKAP2O75563 359 aaPredicted RBP12.78□□□□□ -0.36
SHMT2-229ENST00000557348 MT-CYBP00156 380 aaPredicted RBP12.78□□□□□ -0.36
SHMT2-229ENST00000557348 PENKP01210 267 aaPredicted RBP12.78□□□□□ -0.36
SHMT2-229ENST00000557348 F11P03951 625 aa12.78□□□□□ -0.36
SHMT2-229ENST00000557348 MPOP05164 745 aa12.78□□□□□ -0.36
SHMT2-229ENST00000557348 FGF1P05230 155 aa12.78□□□□□ -0.36
SHMT2-229ENST00000557348 RHOCP08134 193 aa12.78□□□□□ -0.36
SHMT2-229ENST00000557348 TROVE2P10155 538 aaKnown RBP eCLIP12.78□□□□□ -0.36
SHMT2-229ENST00000557348 SP100P23497 879 aaPredicted RBP12.78□□□□□ -0.36
SHMT2-229ENST00000557348 SLC6A4P31645 630 aa12.78□□□□□ -0.36
SHMT2-229ENST00000557348 ETV4P43268 484 aa12.78□□□□□ -0.36
SHMT2-229ENST00000557348 SERPINH1P50454 418 aaKnown RBP12.78□□□□□ -0.36
SHMT2-229ENST00000557348 SLC10A7Q0GE19 358 aa12.78□□□□□ -0.36
SHMT2-229ENST00000557348 MUM1Q2TAK8 710 aa12.78□□□□□ -0.36
SHMT2-229ENST00000557348 RALGPS1Q5JS13 557 aa12.78□□□□□ -0.36
SHMT2-229ENST00000557348 TEDDM1Q5T9Z0 273 aa12.78□□□□□ -0.36
SHMT2-229ENST00000557348 DENND5AQ6IQ26 1287 aa12.78□□□□□ -0.36
SHMT2-229ENST00000557348 KIAA0408Q6ZU52 694 aa12.78□□□□□ -0.36
SHMT2-229ENST00000557348 NDUFAF2Q8N183 169 aa12.78□□□□□ -0.36
SHMT2-229ENST00000557348 FAM13CQ8NE31 585 aa12.78□□□□□ -0.36
SHMT2-229ENST00000557348 SP7Q8TDD2 431 aaPredicted RBP12.78□□□□□ -0.36
SHMT2-229ENST00000557348 ZNF75CPQ92670 426 aaPredicted RBP12.78□□□□□ -0.36
SHMT2-229ENST00000557348 FEM1CQ96JP0 617 aa12.78□□□□□ -0.36
SHMT2-229ENST00000557348 FCRL3Q96P31 734 aaPredicted RBP12.78□□□□□ -0.36
SHMT2-229ENST00000557348 FAM111AQ96PZ2 611 aa12.78□□□□□ -0.36
SHMT2-229ENST00000557348 MANSC1Q9H8J5 431 aa12.78□□□□□ -0.36
SHMT2-229ENST00000557348 PDFQ9HBH1 243 aa12.78□□□□□ -0.36
SHMT2-229ENST00000557348 UBA2Q9UBT2 640 aaPredicted RBP12.78□□□□□ -0.36
SHMT2-229ENST00000557348 ZMYM5Q9UJ78 669 aa12.78□□□□□ -0.36
SHMT2-229ENST00000557348 AGO1Q9UL18 857 aaKnown RBP12.78□□□□□ -0.36
SHMT2-229ENST00000557348 RIMKLBQ9ULI2 386 aa12.78□□□□□ -0.36
SHMT2-229ENST00000557348 ARIH1Q9Y4X5 557 aaPredicted RBP12.78□□□□□ -0.36
SHMT2-229ENST00000557348 CXorf51AA0A1B0GTR3 108 aa12.77□□□□□ -0.36
SHMT2-229ENST00000557348 F8W8V4 182 aa12.77□□□□□ -0.36
SHMT2-229ENST00000557348 EDF1O60869 148 aaKnown RBP12.77□□□□□ -0.36
SHMT2-229ENST00000557348 SIN3BO75182 1162 aa12.77□□□□□ -0.36
SHMT2-229ENST00000557348 PIAS1O75925 651 aa12.77□□□□□ -0.36
SHMT2-229ENST00000557348 SERPINF2P08697 491 aa12.77□□□□□ -0.36
SHMT2-229ENST00000557348 CNPP09543 421 aaKnown RBP12.77□□□□□ -0.36
SHMT2-229ENST00000557348 ERVK-10P10266 1014 aa12.77□□□□□ -0.36
SHMT2-229ENST00000557348 DDX6P26196 483 aaKnown RBP eCLIP12.77□□□□□ -0.365e-6■□□□□ 8.4
SHMT2-229ENST00000557348 PTDSS1P48651 473 aaKnown RBP12.77□□□□□ -0.36
SHMT2-229ENST00000557348 SMAD3P84022 425 aaKnown RBP12.77□□□□□ -0.36
SHMT2-229ENST00000557348 PPARDQ03181 441 aa12.77□□□□□ -0.36
SHMT2-229ENST00000557348 SH2D4BQ5SQS7 431 aa12.77□□□□□ -0.36
SHMT2-229ENST00000557348 IL31Q6EBC2 164 aa12.77□□□□□ -0.36
SHMT2-229ENST00000557348 TMC7Q7Z402 723 aa12.77□□□□□ -0.36
SHMT2-229ENST00000557348 STRA8Q7Z7C7 330 aa12.77□□□□□ -0.36
SHMT2-229ENST00000557348 GALNT7Q86SF2 657 aa12.77□□□□□ -0.36
SHMT2-229ENST00000557348 METTL3Q86U44 580 aaKnown RBP12.77□□□□□ -0.36
SHMT2-229ENST00000557348 LEMD2Q8NC56 503 aa12.77□□□□□ -0.36
SHMT2-229ENST00000557348 PIP4K2CQ8TBX8 421 aa12.77□□□□□ -0.36
SHMT2-229ENST00000557348 SREK1Q8WXA9 508 aaKnown RBP12.77□□□□□ -0.36
SHMT2-229ENST00000557348 NCSTNQ92542 709 aa12.77□□□□□ -0.36
SHMT2-229ENST00000557348 PPP1R14BQ96C90 147 aa12.77□□□□□ -0.36
SHMT2-229ENST00000557348 PSKH2Q96QS6 385 aa12.77□□□□□ -0.36
SHMT2-229ENST00000557348 KLF6Q99612 283 aaPredicted RBP12.77□□□□□ -0.36
SHMT2-229ENST00000557348 APOL2Q9BQE5 337 aa12.77□□□□□ -0.36
SHMT2-229ENST00000557348 MGME1Q9BQP7 344 aa12.77□□□□□ -0.36
SHMT2-229ENST00000557348 CINPQ9BW66 212 aaPredicted RBP12.77□□□□□ -0.36
SHMT2-229ENST00000557348 CHRAC1Q9NRG0 131 aa12.77□□□□□ -0.36
SHMT2-229ENST00000557348 PIH1D1Q9NWS0 290 aaKnown RBP12.77□□□□□ -0.36
SHMT2-229ENST00000557348 PHTF1Q9UMS5 762 aa12.77□□□□□ -0.36
SHMT2-229ENST00000557348 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP12.77□□□□□ -0.37
SHMT2-229ENST00000557348 TGM5O43548 720 aa12.77□□□□□ -0.37
SHMT2-229ENST00000557348 TGDSO95455 350 aa12.77□□□□□ -0.37
SHMT2-229ENST00000557348 CXCL14O95715 111 aa12.77□□□□□ -0.37
SHMT2-229ENST00000557348 GLUD1P00367 558 aa12.77□□□□□ -0.37
SHMT2-229ENST00000557348 APOA4P06727 396 aa12.77□□□□□ -0.37
SHMT2-229ENST00000557348 HDCP19113 662 aa12.77□□□□□ -0.37
SHMT2-229ENST00000557348 HOXD9P28356 352 aaPredicted RBP12.77□□□□□ -0.37
SHMT2-229ENST00000557348 TYK2P29597 1187 aa12.77□□□□□ -0.37
SHMT2-229ENST00000557348 CA8P35219 290 aa12.77□□□□□ -0.37
SHMT2-229ENST00000557348 CD86P42081 329 aa12.77□□□□□ -0.37
SHMT2-229ENST00000557348 MAGEA12P43365 314 aa12.77□□□□□ -0.37
SHMT2-229ENST00000557348 SERPINB4P48594 390 aa12.77□□□□□ -0.37
SHMT2-229ENST00000557348 SLC7A9P82251 487 aa12.77□□□□□ -0.37
SHMT2-229ENST00000557348 THOC5Q13769 683 aaKnown RBP12.77□□□□□ -0.37
SHMT2-229ENST00000557348 BMPR2Q13873 1038 aa12.77□□□□□ -0.37
SHMT2-229ENST00000557348 CCDC153Q494R4 210 aa12.77□□□□□ -0.37
SHMT2-229ENST00000557348 THEMIS2Q5TEJ8 643 aa12.77□□□□□ -0.37
SHMT2-229ENST00000557348 TMEM154Q6P9G4 183 aa12.77□□□□□ -0.37
SHMT2-229ENST00000557348 RFWD3Q6PCD5 774 aa12.77□□□□□ -0.37
SHMT2-229ENST00000557348 LILRA6Q6PI73 481 aa12.77□□□□□ -0.37
SHMT2-229ENST00000557348 FAM217AQ8IXS0 508 aa12.77□□□□□ -0.37
SHMT2-229ENST00000557348 KIRREL3Q8IZU9 778 aa12.77□□□□□ -0.37
SHMT2-229ENST00000557348 KLHL23Q8NBE8 558 aa12.77□□□□□ -0.37
SHMT2-229ENST00000557348 MIPOL1Q8TD10 442 aa12.77□□□□□ -0.37
SHMT2-229ENST00000557348 HERVK_113Q902F9 699 aa12.77□□□□□ -0.37
SHMT2-229ENST00000557348 SPOCK2Q92563 424 aa12.77□□□□□ -0.37
SHMT2-229ENST00000557348 UTP4Q969X6 686 aaKnown RBP12.77□□□□□ -0.37
SHMT2-229ENST00000557348 MFSD3Q96ES6 412 aa12.77□□□□□ -0.37
SHMT2-229ENST00000557348 ZNF419Q96HQ0 510 aaPredicted RBP12.77□□□□□ -0.37
SHMT2-229ENST00000557348 TSNARE1Q96NA8 513 aa12.77□□□□□ -0.37
SHMT2-229ENST00000557348 TRIM56Q9BRZ2 755 aaKnown RBP12.77□□□□□ -0.37
SHMT2-229ENST00000557348 TBC1D10AQ9BXI6 508 aa12.77□□□□□ -0.37
SHMT2-229ENST00000557348 RHOJQ9H4E5 214 aa12.77□□□□□ -0.37
SHMT2-229ENST00000557348 PCMTD2Q9NV79 361 aa12.77□□□□□ -0.37
SHMT2-229ENST00000557348 ANKRD6Q9Y2G4 727 aa12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms