RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 TRIM46Q7Z4K8 759 aa10.24□□□□□ -0.77
SCFD1-220ENST00000556486 TRIM69Q86WT6 500 aa10.24□□□□□ -0.77
SCFD1-220ENST00000556486 CIR1Q86X95 450 aaPredicted RBP10.24□□□□□ -0.77
SCFD1-220ENST00000556486 WDTC1Q8N5D0 677 aa10.24□□□□□ -0.77
SCFD1-220ENST00000556486 SNRNP27Q8WVK2 155 aaKnown RBP10.24□□□□□ -0.77
SCFD1-220ENST00000556486 PRR11Q96HE9 360 aaPredicted RBP10.24□□□□□ -0.77
SCFD1-220ENST00000556486 SLC46A1Q96NT5 459 aa10.24□□□□□ -0.77
SCFD1-220ENST00000556486 TCF12Q99081 682 aa10.24□□□□□ -0.77
SCFD1-220ENST00000556486 FEM1AQ9BSK4 669 aa10.24□□□□□ -0.77
SCFD1-220ENST00000556486 UBE2TQ9NPD8 197 aaPredicted RBP10.24□□□□□ -0.77
SCFD1-220ENST00000556486 TMEM51Q9NW97 253 aa10.24□□□□□ -0.77
SCFD1-220ENST00000556486 UBP1Q9NZI7 540 aa10.24□□□□□ -0.77
SCFD1-220ENST00000556486 HS3ST2Q9Y278 367 aa10.24□□□□□ -0.77
SCFD1-220ENST00000556486 TBC1D30Q9Y2I9 924 aa10.24□□□□□ -0.77
SCFD1-220ENST00000556486 hCG_2014768A0A024R1R8 64 aa10.23□□□□□ -0.77
SCFD1-220ENST00000556486 THAP12O43422 761 aa10.23□□□□□ -0.77
SCFD1-220ENST00000556486 MAGEC1O60732 1142 aa10.23□□□□□ -0.77
SCFD1-220ENST00000556486 MMP20O60882 483 aa10.23□□□□□ -0.77
SCFD1-220ENST00000556486 RNGTTO60942 597 aaKnown RBP10.23□□□□□ -0.77
SCFD1-220ENST00000556486 PIAS2O75928 621 aa10.23□□□□□ -0.77
SCFD1-220ENST00000556486 TNFSF15O95150 251 aa10.23□□□□□ -0.77
SCFD1-220ENST00000556486 FGFR1OPO95684 399 aaKnown RBP10.23□□□□□ -0.77
SCFD1-220ENST00000556486 PDGFRAP16234 1089 aa10.23□□□□□ -0.77
SCFD1-220ENST00000556486 TAF5Q15542 800 aa10.23□□□□□ -0.77
SCFD1-220ENST00000556486 EFHC1Q5JVL4 640 aa10.23□□□□□ -0.77
SCFD1-220ENST00000556486 ACBD5Q5T8D3 534 aaPredicted RBP10.23□□□□□ -0.77
SCFD1-220ENST00000556486 SAMD5Q5TGI4 173 aa10.23□□□□□ -0.77
SCFD1-220ENST00000556486 AGBL4Q5VU57 503 aa10.23□□□□□ -0.77
SCFD1-220ENST00000556486 ISM2Q6H9L7 571 aa10.23□□□□□ -0.77
SCFD1-220ENST00000556486 FBXL22Q6P050 247 aa10.23□□□□□ -0.77
SCFD1-220ENST00000556486 NEK5Q6P3R8 708 aa10.23□□□□□ -0.77
SCFD1-220ENST00000556486 GUSBP11Q6P575 273 aa10.23□□□□□ -0.77
SCFD1-220ENST00000556486 OLFML1Q6UWY5 402 aa10.23□□□□□ -0.77
SCFD1-220ENST00000556486 ATG14Q6ZNE5 492 aa10.23□□□□□ -0.77
SCFD1-220ENST00000556486 SLC26A9Q7LBE3 791 aa10.23□□□□□ -0.77
SCFD1-220ENST00000556486 SLC22A18ASQ8N1D0 253 aa10.23□□□□□ -0.77
SCFD1-220ENST00000556486 ZNF397Q8NF99 534 aaPredicted RBP10.23□□□□□ -0.77
SCFD1-220ENST00000556486 NT5C3BQ969T7 300 aa10.23□□□□□ -0.77
SCFD1-220ENST00000556486 CPXM1Q96SM3 734 aa10.23□□□□□ -0.77
SCFD1-220ENST00000556486 SRRTQ9BXP5 876 aaKnown RBP10.23□□□□□ -0.77
SCFD1-220ENST00000556486 ZFYVE1Q9HBF4 777 aa10.23□□□□□ -0.77
SCFD1-220ENST00000556486 ACP6Q9NPH0 428 aa10.23□□□□□ -0.77
SCFD1-220ENST00000556486 DDIT4Q9NX09 232 aa10.23□□□□□ -0.77
SCFD1-220ENST00000556486 DNAJC28Q9NX36 388 aa10.23□□□□□ -0.77
SCFD1-220ENST00000556486 RRN3Q9NYV6 651 aa10.23□□□□□ -0.77
SCFD1-220ENST00000556486 ANKMY1Q9P2S6 941 aa10.23□□□□□ -0.77
SCFD1-220ENST00000556486 APEX2Q9UBZ4 518 aa10.23□□□□□ -0.77
SCFD1-220ENST00000556486 CTNND2Q9UQB3 1225 aa10.23□□□□□ -0.77
SCFD1-220ENST00000556486 ENTPD2Q9Y5L3 495 aa10.23□□□□□ -0.77
SCFD1-220ENST00000556486 ZFC3H1O60293 1989 aaKnown RBP10.23□□□□□ -0.77
SCFD1-220ENST00000556486 PRAMEF26H0Y7S4 382 aa10.22□□□□□ -0.77
SCFD1-220ENST00000556486 K7ESM1 405 aa10.22□□□□□ -0.77
SCFD1-220ENST00000556486 CLDN11O75508 207 aa10.22□□□□□ -0.77
SCFD1-220ENST00000556486 SNRPBP14678 240 aaKnown RBP10.22□□□□□ -0.77
SCFD1-220ENST00000556486 CYP4F2P78329 520 aa10.22□□□□□ -0.77
SCFD1-220ENST00000556486 TLE1Q04724 770 aa10.22□□□□□ -0.77
SCFD1-220ENST00000556486 AUHQ13825 339 aaKnown RBP10.22□□□□□ -0.77
SCFD1-220ENST00000556486 DEFB133Q30KQ1 61 aa10.22□□□□□ -0.77
SCFD1-220ENST00000556486 ARL13BQ3SXY8 428 aa10.22□□□□□ -0.77
SCFD1-220ENST00000556486 ACCSLQ4AC99 568 aa10.22□□□□□ -0.77
SCFD1-220ENST00000556486 SETMARQ53H47 684 aaPredicted RBP10.22□□□□□ -0.77
SCFD1-220ENST00000556486 SNAP47Q5SQN1 464 aa10.22□□□□□ -0.77
SCFD1-220ENST00000556486 PERM1Q5SV97 790 aa10.22□□□□□ -0.77
SCFD1-220ENST00000556486 HIST2H2BCQ6DN03 193 aa10.22□□□□□ -0.77
SCFD1-220ENST00000556486 USP53Q70EK8 1073 aa10.22□□□□□ -0.77
SCFD1-220ENST00000556486 EFL1Q7Z2Z2 1120 aaKnown RBP10.22□□□□□ -0.77
SCFD1-220ENST00000556486 PTAR1Q7Z6K3 402 aaPredicted RBP10.22□□□□□ -0.77
SCFD1-220ENST00000556486 NLRP8Q86W28 1048 aa10.22□□□□□ -0.77
SCFD1-220ENST00000556486 ZDHHC17Q8IUH5 632 aa10.22□□□□□ -0.77
SCFD1-220ENST00000556486 ZNF683Q8IZ20 524 aa10.22□□□□□ -0.77
SCFD1-220ENST00000556486 DEFB106AQ8N104 65 aa10.22□□□□□ -0.77
SCFD1-220ENST00000556486 SH2D3CQ8N5H7 860 aa10.22□□□□□ -0.77
SCFD1-220ENST00000556486 GOLM1Q8NBJ4 401 aa10.22□□□□□ -0.77
SCFD1-220ENST00000556486 TMEM145Q8NBT3 493 aa10.22□□□□□ -0.77
SCFD1-220ENST00000556486 C1orf131Q8NDD1 294 aaKnown RBP10.22□□□□□ -0.77
SCFD1-220ENST00000556486 OR52K2Q8NGK3 314 aa10.22□□□□□ -0.77
SCFD1-220ENST00000556486 OR8D1Q8WZ84 308 aa10.22□□□□□ -0.77
SCFD1-220ENST00000556486 NKD1Q969G9 470 aa10.22□□□□□ -0.77
SCFD1-220ENST00000556486 ANAPC16Q96DE5 110 aa10.22□□□□□ -0.77
SCFD1-220ENST00000556486 PGAP3Q96FM1 320 aaPredicted RBP10.22□□□□□ -0.77
SCFD1-220ENST00000556486 PPP1R13BQ96KQ4 1090 aa10.22□□□□□ -0.77
SCFD1-220ENST00000556486 CCNL2Q96S94 520 aaPredicted RBP10.22□□□□□ -0.77
SCFD1-220ENST00000556486 CEP44Q9C0F1 390 aa10.22□□□□□ -0.77
SCFD1-220ENST00000556486 RUBCNLQ9H714 662 aa10.22□□□□□ -0.77
SCFD1-220ENST00000556486 FAM204AQ9H8W3 233 aa10.22□□□□□ -0.77
SCFD1-220ENST00000556486 GPAMQ9HCL2 828 aa10.22□□□□□ -0.77
SCFD1-220ENST00000556486 PREBQ9HCU5 417 aa10.22□□□□□ -0.77
SCFD1-220ENST00000556486 RWDD2AQ9UIY3 292 aa10.22□□□□□ -0.77
SCFD1-220ENST00000556486 UNC79Q9P2D8 2635 aa10.21□□□□□ -0.77
SCFD1-220ENST00000556486 RP1P56715 2156 aa10.21□□□□□ -0.77
SCFD1-220ENST00000556486 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP10.21□□□□□ -0.77
SCFD1-220ENST00000556486 CXorf51AA0A1B0GTR3 108 aa10.21□□□□□ -0.77
SCFD1-220ENST00000556486 A0A1W2PQU0 124 aa10.21□□□□□ -0.77
SCFD1-220ENST00000556486 CDRT15L2A8MXV6 281 aa10.21□□□□□ -0.77
SCFD1-220ENST00000556486 C1QTNF3-AMACRE9PGA6 284 aa10.21□□□□□ -0.77
SCFD1-220ENST00000556486 RNF103O00237 685 aa10.21□□□□□ -0.77
SCFD1-220ENST00000556486 MUSKO15146 869 aa10.21□□□□□ -0.77
SCFD1-220ENST00000556486 SUV39H1O43463 412 aa10.21□□□□□ -0.77
SCFD1-220ENST00000556486 DAB1O75553 588 aa10.21□□□□□ -0.77
SCFD1-220ENST00000556486 CELA3AP09093 270 aa10.21□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms