RNA–Protein interactions for RNA: ENST00000554975.5

SHMT2-216, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 780 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-216ENST00000554975 KRT82Q9NSB4 513 aa11.34□□□□□ -0.59
SHMT2-216ENST00000554975 FAM49BQ9NUQ9 324 aa11.34□□□□□ -0.59
SHMT2-216ENST00000554975 CFAP97Q9P2B7 532 aa11.34□□□□□ -0.59
SHMT2-216ENST00000554975 CYTH4Q9UIA0 394 aa11.34□□□□□ -0.59
SHMT2-216ENST00000554975 COL5A1P20908 1838 aaPredicted RBP11.33□□□□□ -0.6
SHMT2-216ENST00000554975 TBC1D3BA6NDS4 549 aa11.33□□□□□ -0.6
SHMT2-216ENST00000554975 PYCARD-AS1I3L0S3 204 aa11.33□□□□□ -0.6
SHMT2-216ENST00000554975 TLX3O43711 291 aaPredicted RBP11.33□□□□□ -0.6
SHMT2-216ENST00000554975 TULP3O75386 442 aa11.33□□□□□ -0.6
SHMT2-216ENST00000554975 AP1G2O75843 785 aa11.33□□□□□ -0.6
SHMT2-216ENST00000554975 ZWINTO95229 277 aa11.33□□□□□ -0.6
SHMT2-216ENST00000554975 OLFM2O95897 454 aa11.33□□□□□ -0.6
SHMT2-216ENST00000554975 ZBED1O96006 694 aa11.33□□□□□ -0.6
SHMT2-216ENST00000554975 ADH1CP00326 375 aa11.33□□□□□ -0.6
SHMT2-216ENST00000554975 TCF4P15884 667 aa11.33□□□□□ -0.6
SHMT2-216ENST00000554975 KRT15P19012 456 aa11.33□□□□□ -0.6
SHMT2-216ENST00000554975 IL1R2P27930 398 aa11.33□□□□□ -0.6
SHMT2-216ENST00000554975 ADORA2BP29275 332 aa11.33□□□□□ -0.6
SHMT2-216ENST00000554975 NTSR1P30989 418 aa11.33□□□□□ -0.6
SHMT2-216ENST00000554975 CLDN6P56747 220 aa11.33□□□□□ -0.6
SHMT2-216ENST00000554975 GEMIN4P57678 1058 aaKnown RBP11.33□□□□□ -0.6
SHMT2-216ENST00000554975 DYNLT1P63172 113 aa11.33□□□□□ -0.6
SHMT2-216ENST00000554975 XRCC4Q13426 336 aa11.33□□□□□ -0.6
SHMT2-216ENST00000554975 SPARCL1Q14515 664 aa11.33□□□□□ -0.6
SHMT2-216ENST00000554975 ATP13A4Q4VNC1 1196 aa11.33□□□□□ -0.6
SHMT2-216ENST00000554975 PKDCCQ504Y2 493 aa11.33□□□□□ -0.6
SHMT2-216ENST00000554975 ZC3H12AQ5D1E8 599 aaKnown RBP11.33□□□□□ -0.6
SHMT2-216ENST00000554975 DARS2Q6PI48 645 aaKnown RBP11.33□□□□□ -0.6
SHMT2-216ENST00000554975 OLFML1Q6UWY5 402 aa11.33□□□□□ -0.6
SHMT2-216ENST00000554975 RGS9BPQ6ZS82 235 aa11.33□□□□□ -0.6
SHMT2-216ENST00000554975 TMEM110Q86TL2 294 aa11.33□□□□□ -0.6
SHMT2-216ENST00000554975 TRABD2AQ86V40 505 aa11.33□□□□□ -0.6
SHMT2-216ENST00000554975 ZBED8Q8IZ13 594 aa11.33□□□□□ -0.6
SHMT2-216ENST00000554975 EMC1Q8N766 993 aa11.33□□□□□ -0.6
SHMT2-216ENST00000554975 NAT8LQ8N9F0 302 aa11.33□□□□□ -0.6
SHMT2-216ENST00000554975 PYROXD1Q8WU10 500 aa11.33□□□□□ -0.6
SHMT2-216ENST00000554975 WBP2Q969T9 261 aa11.33□□□□□ -0.6
SHMT2-216ENST00000554975 SMARCD1Q96GM5 515 aa11.33□□□□□ -0.6
SHMT2-216ENST00000554975 C8orf48Q96LL4 319 aa11.33□□□□□ -0.6
SHMT2-216ENST00000554975 PRMT1Q99873 361 aaKnown RBP11.33□□□□□ -0.6
SHMT2-216ENST00000554975 TMEM121Q9BTD3 319 aa11.33□□□□□ -0.6
SHMT2-216ENST00000554975 ACSS3Q9H6R3 686 aa11.33□□□□□ -0.6
SHMT2-216ENST00000554975 GAREM1Q9H706 876 aa11.33□□□□□ -0.6
SHMT2-216ENST00000554975 KCNK9Q9NPC2 374 aa11.33□□□□□ -0.6
SHMT2-216ENST00000554975 TM7SF3Q9NS93 570 aa11.33□□□□□ -0.6
SHMT2-216ENST00000554975 TRPM5Q9NZQ8 1165 aa11.33□□□□□ -0.6
SHMT2-216ENST00000554975 RAD54BQ9Y620 910 aa11.33□□□□□ -0.6
SHMT2-216ENST00000554975 SLCO1B1Q9Y6L6 691 aa11.33□□□□□ -0.6
SHMT2-216ENST00000554975 IQANK1A0A1B0GTG1 560 aa11.32□□□□□ -0.6
SHMT2-216ENST00000554975 ZNF840PA6NDX5 716 aa11.32□□□□□ -0.6
SHMT2-216ENST00000554975 CFAP73A6NFT4 308 aa11.32□□□□□ -0.6
SHMT2-216ENST00000554975 HACD1B0YJ81 288 aa11.32□□□□□ -0.6
SHMT2-216ENST00000554975 H7C0C1 242 aa11.32□□□□□ -0.6
SHMT2-216ENST00000554975 PLK4O00444 970 aa11.32□□□□□ -0.6
SHMT2-216ENST00000554975 STK10O94804 968 aaKnown RBP11.32□□□□□ -0.6
SHMT2-216ENST00000554975 OAS1P00973 400 aaKnown RBP11.32□□□□□ -0.6
SHMT2-216ENST00000554975 MAGEA6P43360 314 aa11.32□□□□□ -0.6
SHMT2-216ENST00000554975 ATP5OP48047 213 aa11.32□□□□□ -0.6
SHMT2-216ENST00000554975 NR2C2P49116 596 aa11.32□□□□□ -0.6
SHMT2-216ENST00000554975 LIG3P49916 1009 aa11.32□□□□□ -0.6
SHMT2-216ENST00000554975 ZNF135P52742 658 aaPredicted RBP11.32□□□□□ -0.6
SHMT2-216ENST00000554975 CACNA2D1P54289 1103 aa11.32□□□□□ -0.6
SHMT2-216ENST00000554975 AIF1P55008 147 aa11.32□□□□□ -0.6
SHMT2-216ENST00000554975 BASP1P80723 227 aaKnown RBP11.32□□□□□ -0.6
SHMT2-216ENST00000554975 ACTN3Q08043 901 aaPredicted RBP11.32□□□□□ -0.6
SHMT2-216ENST00000554975 DPYSL3Q14195 570 aa11.32□□□□□ -0.6
SHMT2-216ENST00000554975 CCDC157Q569K6 752 aa11.32□□□□□ -0.6
SHMT2-216ENST00000554975 EFHC1Q5JVL4 640 aa11.32□□□□□ -0.6
SHMT2-216ENST00000554975 SLC9A4Q6AI14 798 aa11.32□□□□□ -0.6
SHMT2-216ENST00000554975 TXNRD3NBQ6F5E7 133 aa11.32□□□□□ -0.6
SHMT2-216ENST00000554975 DBX2Q6ZNG2 339 aa11.32□□□□□ -0.6
SHMT2-216ENST00000554975 STRADAQ7RTN6 431 aa11.32□□□□□ -0.6
SHMT2-216ENST00000554975 PIGWQ7Z7B1 504 aa11.32□□□□□ -0.6
SHMT2-216ENST00000554975 SRRM1Q8IYB3 904 aaKnown RBP11.32□□□□□ -0.6
SHMT2-216ENST00000554975 CRYBG2Q8N1P7 616 aa11.32□□□□□ -0.6
SHMT2-216ENST00000554975 PDCD7Q8N8D1 485 aaKnown RBP11.32□□□□□ -0.6
SHMT2-216ENST00000554975 C12orf29Q8N999 325 aa11.32□□□□□ -0.6
SHMT2-216ENST00000554975 TERB1Q8NA31 727 aa11.32□□□□□ -0.6
SHMT2-216ENST00000554975 ANKRD52Q8NB46 1076 aa11.32□□□□□ -0.6
SHMT2-216ENST00000554975 SLC2A14Q8TDB8 520 aa11.32□□□□□ -0.6
SHMT2-216ENST00000554975 CPT1BQ92523 772 aa11.32□□□□□ -0.6
SHMT2-216ENST00000554975 FBXO32Q969P5 355 aa11.32□□□□□ -0.6
SHMT2-216ENST00000554975 FAF2Q96CS3 445 aa11.32□□□□□ -0.6
SHMT2-216ENST00000554975 ZFRQ96KR1 1074 aaKnown RBP11.32□□□□□ -0.6
SHMT2-216ENST00000554975 RNF157Q96PX1 679 aa11.32□□□□□ -0.6
SHMT2-216ENST00000554975 KCNK16Q96T55 309 aa11.32□□□□□ -0.6
SHMT2-216ENST00000554975 CYTH2Q99418 400 aa11.32□□□□□ -0.6
SHMT2-216ENST00000554975 FAM118BQ9BPY3 351 aa11.32□□□□□ -0.6
SHMT2-216ENST00000554975 ZDHHC5Q9C0B5 715 aa11.32□□□□□ -0.6
SHMT2-216ENST00000554975 DMAP1Q9NPF5 467 aaPredicted RBP11.32□□□□□ -0.6
SHMT2-216ENST00000554975 DNAJC17Q9NVM6 304 aaKnown RBP11.32□□□□□ -0.6
SHMT2-216ENST00000554975 SUSD2Q9UGT4 822 aa11.32□□□□□ -0.6
SHMT2-216ENST00000554975 STAP1Q9ULZ2 295 aa11.32□□□□□ -0.6
SHMT2-216ENST00000554975 NAALADL1Q9UQQ1 740 aa11.32□□□□□ -0.6
SHMT2-216ENST00000554975 IKBKGQ9Y6K9 419 aa11.32□□□□□ -0.6
SHMT2-216ENST00000554975 CAPN7Q9Y6W3 813 aa11.32□□□□□ -0.6
SHMT2-216ENST00000554975 ARID1BQ8NFD5 2236 aaPredicted RBP11.32□□□□□ -0.6
SHMT2-216ENST00000554975 PLXNA2O75051 1894 aa11.32□□□□□ -0.6
SHMT2-216ENST00000554975 A0A1B0GTW7 788 aa11.31□□□□□ -0.6
SHMT2-216ENST00000554975 CCT8L1PA6NM43 557 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms