RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 MFAP3LO75121 409 aa16.23■□□□□ 0.19
CCDC88C-209ENST00000554872 ITGAVP06756 1048 aa16.23■□□□□ 0.19
CCDC88C-209ENST00000554872 TPM1P09493 284 aa16.23■□□□□ 0.19
CCDC88C-209ENST00000554872 H2AFZP0C0S5 128 aa16.23■□□□□ 0.19
CCDC88C-209ENST00000554872 TMEM253P0C7T8 217 aa16.23■□□□□ 0.19
CCDC88C-209ENST00000554872 THEGLP0DJG4 465 aa16.23■□□□□ 0.19
CCDC88C-209ENST00000554872 CDK4P11802 303 aa16.23■□□□□ 0.19
CCDC88C-209ENST00000554872 SERPINB6P35237 376 aa16.23■□□□□ 0.19
CCDC88C-209ENST00000554872 HSPA9P38646 679 aaKnown RBP16.23■□□□□ 0.19
CCDC88C-209ENST00000554872 ARSEP51690 589 aa16.23■□□□□ 0.19
CCDC88C-209ENST00000554872 ELP6Q0PNE2 266 aa16.23■□□□□ 0.19
CCDC88C-209ENST00000554872 NFKBIBQ15653 356 aa16.23■□□□□ 0.19
CCDC88C-209ENST00000554872 SMTNL2Q2TAL5 461 aa16.23■□□□□ 0.19
CCDC88C-209ENST00000554872 TMCO3Q6UWJ1 677 aa16.23■□□□□ 0.19
CCDC88C-209ENST00000554872 H2AFVQ71UI9 128 aa16.23■□□□□ 0.19
CCDC88C-209ENST00000554872 SLCO6A1Q86UG4 719 aa16.23■□□□□ 0.19
CCDC88C-209ENST00000554872 LRRC49Q8IUZ0 686 aa16.23■□□□□ 0.19
CCDC88C-209ENST00000554872 OR13H1Q8NG92 308 aa16.23■□□□□ 0.19
CCDC88C-209ENST00000554872 CTNNBL1Q8WYA6 563 aaPredicted RBP16.23■□□□□ 0.19
CCDC88C-209ENST00000554872 ECHDC3Q96DC8 303 aa16.23■□□□□ 0.19
CCDC88C-209ENST00000554872 SP110Q9HB58 689 aa16.23■□□□□ 0.19
CCDC88C-209ENST00000554872 ZNHIT6Q9NWK9 470 aaKnown RBP16.23■□□□□ 0.19
CCDC88C-209ENST00000554872 FTSJ1Q9UET6 329 aa16.23■□□□□ 0.19
CCDC88C-209ENST00000554872 IPO11Q9UI26 975 aaKnown RBP16.23■□□□□ 0.19
CCDC88C-209ENST00000554872 AKAP13Q12802 2813 aa16.23■□□□□ 0.19
CCDC88C-209ENST00000554872 CFAP69A5D8W1 941 aa16.22■□□□□ 0.19
CCDC88C-209ENST00000554872 PALMO75781 387 aa16.22■□□□□ 0.19
CCDC88C-209ENST00000554872 PROSCO94903 275 aa16.22■□□□□ 0.19
CCDC88C-209ENST00000554872 TOP3BO95985 862 aaKnown RBP16.22■□□□□ 0.19
CCDC88C-209ENST00000554872 PROS1P07225 676 aa16.22■□□□□ 0.19
CCDC88C-209ENST00000554872 TIMP2P16035 220 aa16.22■□□□□ 0.19
CCDC88C-209ENST00000554872 RABIFP47224 123 aa16.22■□□□□ 0.19
CCDC88C-209ENST00000554872 RENBPP51606 427 aa16.22■□□□□ 0.19
CCDC88C-209ENST00000554872 PFN3P60673 137 aa16.22■□□□□ 0.19
CCDC88C-209ENST00000554872 AP1S1P61966 158 aa16.22■□□□□ 0.19
CCDC88C-209ENST00000554872 IL9RQ01113 521 aa16.22■□□□□ 0.19
CCDC88C-209ENST00000554872 SGCGQ13326 291 aa16.22■□□□□ 0.19
CCDC88C-209ENST00000554872 AGERQ15109 404 aa16.22■□□□□ 0.19
CCDC88C-209ENST00000554872 HADHQ16836 314 aaKnown RBP16.22■□□□□ 0.19
CCDC88C-209ENST00000554872 TMEM52BQ4KMG9 183 aa16.22■□□□□ 0.19
CCDC88C-209ENST00000554872 TXNRD3NBQ6F5E7 133 aa16.22■□□□□ 0.19
CCDC88C-209ENST00000554872 UNQ6494/PRO21346Q6UXR6 183 aa16.22■□□□□ 0.19
CCDC88C-209ENST00000554872 TTC7BQ86TV6 843 aa16.22■□□□□ 0.19
CCDC88C-209ENST00000554872 CNGA4Q8IV77 575 aa16.22■□□□□ 0.19
CCDC88C-209ENST00000554872 SLC22A18ASQ8N1D0 253 aa16.22■□□□□ 0.19
CCDC88C-209ENST00000554872 KDF1Q8NAX2 398 aaPredicted RBP16.22■□□□□ 0.19
CCDC88C-209ENST00000554872 HSPH1Q92598 858 aa16.22■□□□□ 0.19
CCDC88C-209ENST00000554872 BMFQ96LC9 184 aa16.22■□□□□ 0.19
CCDC88C-209ENST00000554872 C1QTNF7Q9BXJ2 289 aa16.22■□□□□ 0.19
CCDC88C-209ENST00000554872 SUV39H2Q9H5I1 410 aa16.22■□□□□ 0.19
CCDC88C-209ENST00000554872 ATP13A3Q9H7F0 1226 aa16.22■□□□□ 0.19
CCDC88C-209ENST00000554872 SEPT3Q9UH03 358 aa16.22■□□□□ 0.19
CCDC88C-209ENST00000554872 CA5BQ9Y2D0 317 aa16.22■□□□□ 0.19
CCDC88C-209ENST00000554872 IGLON5A6NGN9 336 aa16.21■□□□□ 0.19
CCDC88C-209ENST00000554872 DFFAO00273 331 aa16.21■□□□□ 0.19
CCDC88C-209ENST00000554872 NEMP1O14524 444 aa16.21■□□□□ 0.19
CCDC88C-209ENST00000554872 INSIG1O15503 277 aa16.21■□□□□ 0.19
CCDC88C-209ENST00000554872 MTA2O94776 668 aa16.21■□□□□ 0.19
CCDC88C-209ENST00000554872 PEX11BO96011 259 aa16.21■□□□□ 0.19
CCDC88C-209ENST00000554872 PAK4O96013 591 aaPredicted RBP16.21■□□□□ 0.19
CCDC88C-209ENST00000554872 C1SP09871 688 aa16.21■□□□□ 0.19
CCDC88C-209ENST00000554872 ATXN1LP0C7T5 689 aaKnown RBP16.21■□□□□ 0.19
CCDC88C-209ENST00000554872 IL4RP24394 825 aa16.21■□□□□ 0.19
CCDC88C-209ENST00000554872 SERPINA4P29622 427 aa16.21■□□□□ 0.19
CCDC88C-209ENST00000554872 TBX2Q13207 712 aaPredicted RBP16.21■□□□□ 0.19
CCDC88C-209ENST00000554872 TCEAL1Q15170 157 aa16.21■□□□□ 0.19
CCDC88C-209ENST00000554872 UGP2Q16851 508 aa16.21■□□□□ 0.19
CCDC88C-209ENST00000554872 TSR1Q2NL82 804 aaKnown RBP16.21■□□□□ 0.19
CCDC88C-209ENST00000554872 RALGPS1Q5JS13 557 aa16.21■□□□□ 0.19
CCDC88C-209ENST00000554872 SRLQ86TD4 932 aa16.21■□□□□ 0.19
CCDC88C-209ENST00000554872 GATAD2AQ86YP4 633 aa16.21■□□□□ 0.19
CCDC88C-209ENST00000554872 TSEN2Q8NCE0 465 aaKnown RBP16.21■□□□□ 0.19
CCDC88C-209ENST00000554872 KLK6Q92876 244 aa16.21■□□□□ 0.19
CCDC88C-209ENST00000554872 FATE1Q969F0 183 aa16.21■□□□□ 0.19
CCDC88C-209ENST00000554872 CENPTQ96BT3 561 aa16.21■□□□□ 0.19
CCDC88C-209ENST00000554872 BTBD6Q96KE9 485 aa16.21■□□□□ 0.19
CCDC88C-209ENST00000554872 EXOC2Q96KP1 924 aa16.21■□□□□ 0.19
CCDC88C-209ENST00000554872 ZNF670Q9BS34 389 aa16.21■□□□□ 0.19
CCDC88C-209ENST00000554872 CINPQ9BW66 212 aaPredicted RBP16.21■□□□□ 0.19
CCDC88C-209ENST00000554872 DEF6Q9H4E7 631 aa16.21■□□□□ 0.19
CCDC88C-209ENST00000554872 FZD3Q9NPG1 666 aa16.21■□□□□ 0.19
CCDC88C-209ENST00000554872 GGT7Q9UJ14 662 aa16.21■□□□□ 0.19
CCDC88C-209ENST00000554872 KLK13Q9UKR3 277 aa16.21■□□□□ 0.19
CCDC88C-209ENST00000554872 ITM2BQ9Y287 266 aa16.21■□□□□ 0.19
CCDC88C-209ENST00000554872 SPTY2D1-AS1A0A0U1RR47 76 aa16.2■□□□□ 0.18
CCDC88C-209ENST00000554872 A0A1W2PQ67 120 aa16.2■□□□□ 0.18
CCDC88C-209ENST00000554872 POM121BA6NF01 834 aa16.2■□□□□ 0.18
CCDC88C-209ENST00000554872 ZNF487B1APH4 448 aa16.2■□□□□ 0.18
CCDC88C-209ENST00000554872 RIOK3O14730 519 aaKnown RBP16.2■□□□□ 0.18
CCDC88C-209ENST00000554872 FPGTO14772 594 aa16.2■□□□□ 0.18
CCDC88C-209ENST00000554872 RAD51BO15315 384 aa16.2■□□□□ 0.18
CCDC88C-209ENST00000554872 BUB1BO60566 1050 aaPredicted RBP16.2■□□□□ 0.18
CCDC88C-209ENST00000554872 MAFKO60675 156 aa16.2■□□□□ 0.18
CCDC88C-209ENST00000554872 CR2P20023 1033 aa16.2■□□□□ 0.18
CCDC88C-209ENST00000554872 AMPD1P23109 780 aa16.2■□□□□ 0.18
CCDC88C-209ENST00000554872 MMP12P39900 470 aa16.2■□□□□ 0.18
CCDC88C-209ENST00000554872 RGRP47804 291 aa16.2■□□□□ 0.18
CCDC88C-209ENST00000554872 CDH6P55285 790 aa16.2■□□□□ 0.18
CCDC88C-209ENST00000554872 CLDN2P57739 230 aa16.2■□□□□ 0.18
CCDC88C-209ENST00000554872 ILKQ13418 452 aa16.2■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms