RNA–Protein interactions for RNA: ENST00000553950.5

SHMT2-210, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-210ENST00000553950 ATG13O75143 517 aa14.65□□□□□ -0.06
SHMT2-210ENST00000553950 PMPCBO75439 489 aa14.65□□□□□ -0.06
SHMT2-210ENST00000553950 ZNF821O75541 412 aaPredicted RBP14.65□□□□□ -0.06
SHMT2-210ENST00000553950 TMEM63AO94886 807 aa14.65□□□□□ -0.06
SHMT2-210ENST00000553950 NDST3O95803 873 aa14.65□□□□□ -0.06
SHMT2-210ENST00000553950 MT-CYBP00156 380 aaPredicted RBP14.65□□□□□ -0.06
SHMT2-210ENST00000553950 MMP2P08253 660 aa14.65□□□□□ -0.06
SHMT2-210ENST00000553950 TIE1P35590 1138 aa14.65□□□□□ -0.06
SHMT2-210ENST00000553950 RGRP47804 291 aa14.65□□□□□ -0.06
SHMT2-210ENST00000553950 SEC13P55735 322 aa14.65□□□□□ -0.06
SHMT2-210ENST00000553950 CDK18Q07002 472 aa14.65□□□□□ -0.06
SHMT2-210ENST00000553950 NIPAL4Q0D2K0 466 aa14.65□□□□□ -0.06
SHMT2-210ENST00000553950 CCDC15Q0P6D6 951 aa14.65□□□□□ -0.06
SHMT2-210ENST00000553950 SFSWAPQ12872 951 aaKnown RBP14.65□□□□□ -0.06
SHMT2-210ENST00000553950 ARMC12Q5T9G4 340 aa14.65□□□□□ -0.06
SHMT2-210ENST00000553950 FAM46CQ5VWP2 391 aa14.65□□□□□ -0.06
SHMT2-210ENST00000553950 LRRC8BQ6P9F7 803 aa14.65□□□□□ -0.06
SHMT2-210ENST00000553950 BRAT1Q6PJG6 821 aa14.65□□□□□ -0.06
SHMT2-210ENST00000553950 DPY19L3Q6ZPD9 716 aa14.65□□□□□ -0.06
SHMT2-210ENST00000553950 PRPF39Q86UA1 669 aaKnown RBP14.65□□□□□ -0.06
SHMT2-210ENST00000553950 TAB3Q8N5C8 712 aaPredicted RBP14.65□□□□□ -0.06
SHMT2-210ENST00000553950 DNAAF3Q8N9W5 541 aa14.65□□□□□ -0.06
SHMT2-210ENST00000553950 SPATA22Q8NHS9 363 aa14.65□□□□□ -0.06
SHMT2-210ENST00000553950 FBXO25Q8TCJ0 367 aa14.65□□□□□ -0.06
SHMT2-210ENST00000553950 GORASP1Q9BQQ3 440 aa14.65□□□□□ -0.06
SHMT2-210ENST00000553950 MLPHQ9BV36 600 aaPredicted RBP14.65□□□□□ -0.06
SHMT2-210ENST00000553950 FICDQ9BVA6 458 aa14.65□□□□□ -0.06
SHMT2-210ENST00000553950 LTB4R2Q9NPC1 389 aa14.65□□□□□ -0.06
SHMT2-210ENST00000553950 DYRK4Q9NR20 520 aa14.65□□□□□ -0.06
SHMT2-210ENST00000553950 CACNA2D2Q9NY47 1150 aa14.65□□□□□ -0.06
SHMT2-210ENST00000553950 EVLQ9UI08 416 aaPredicted RBP14.65□□□□□ -0.06
SHMT2-210ENST00000553950 NDRG2Q9UN36 371 aaKnown RBP14.65□□□□□ -0.06
SHMT2-210ENST00000553950 RAI2Q9Y5P3 530 aa14.65□□□□□ -0.06
SHMT2-210ENST00000553950 MYLKQ15746 1914 aa14.64□□□□□ -0.07
SHMT2-210ENST00000553950 CCDC151A5D8V7 595 aa14.64□□□□□ -0.07
SHMT2-210ENST00000553950 F5H423 210 aaPredicted RBP14.64□□□□□ -0.07
SHMT2-210ENST00000553950 HTRA2O43464 458 aaPredicted RBP14.64□□□□□ -0.07
SHMT2-210ENST00000553950 BNIP3LO60238 219 aa14.64□□□□□ -0.07
SHMT2-210ENST00000553950 RNF40O75150 1001 aa14.64□□□□□ -0.07
SHMT2-210ENST00000553950 CPP00450 1065 aa14.64□□□□□ -0.07
SHMT2-210ENST00000553950 HOXB2P14652 356 aa14.64□□□□□ -0.07
SHMT2-210ENST00000553950 PRKCHP24723 683 aa14.64□□□□□ -0.07
SHMT2-210ENST00000553950 SUOXP51687 545 aa14.64□□□□□ -0.07
SHMT2-210ENST00000553950 EPHB1P54762 984 aa14.64□□□□□ -0.07
SHMT2-210ENST00000553950 POLR2LP62875 67 aaKnown RBP14.64□□□□□ -0.07
SHMT2-210ENST00000553950 CAMK2GQ13555 558 aaPredicted RBP14.64□□□□□ -0.07
SHMT2-210ENST00000553950 SLMAPQ14BN4 828 aa14.64□□□□□ -0.07
SHMT2-210ENST00000553950 BRD3Q15059 726 aa14.64□□□□□ -0.07
SHMT2-210ENST00000553950 PCSK7Q16549 785 aa14.64□□□□□ -0.07
SHMT2-210ENST00000553950 EMBQ6PCB8 327 aa14.64□□□□□ -0.07
SHMT2-210ENST00000553950 ZDHHC24Q6UX98 284 aa14.64□□□□□ -0.07
SHMT2-210ENST00000553950 GDPD4Q6W3E5 623 aa14.64□□□□□ -0.07
SHMT2-210ENST00000553950 PHF6Q8IWS0 365 aaKnown RBP eCLIP14.64□□□□□ -0.07
SHMT2-210ENST00000553950 SIX5Q8N196 739 aa14.64□□□□□ -0.07
SHMT2-210ENST00000553950 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP14.64□□□□□ -0.07
SHMT2-210ENST00000553950 TMIEQ8NEW7 156 aa14.64□□□□□ -0.07
SHMT2-210ENST00000553950 PTPRN2Q92932 1015 aa14.64□□□□□ -0.07
SHMT2-210ENST00000553950 MRGPRX2Q96LB1 330 aa14.64□□□□□ -0.07
SHMT2-210ENST00000553950 SERPINB12Q96P63 405 aa14.64□□□□□ -0.07
SHMT2-210ENST00000553950 NAT9Q9BTE0 207 aa14.64□□□□□ -0.07
SHMT2-210ENST00000553950 ARNT2Q9HBZ2 717 aa14.64□□□□□ -0.07
SHMT2-210ENST00000553950 FBRSL1Q9HCM7 1045 aaKnown RBP14.64□□□□□ -0.07
SHMT2-210ENST00000553950 ZDHHC18Q9NUE0 388 aa14.64□□□□□ -0.07
SHMT2-210ENST00000553950 BFARQ9NZS9 450 aa14.64□□□□□ -0.07
SHMT2-210ENST00000553950 HACD3Q9P035 362 aa14.64□□□□□ -0.07
SHMT2-210ENST00000553950 MMP17Q9ULZ9 603 aa14.64□□□□□ -0.07
SHMT2-210ENST00000553950 ATG2BQ96BY7 2078 aa14.63□□□□□ -0.07
SHMT2-210ENST00000553950 UQCRHLA0A096LP55 91 aa14.63□□□□□ -0.07
SHMT2-210ENST00000553950 LOC285095A0A1B0GVY8 99 aa14.63□□□□□ -0.07
SHMT2-210ENST00000553950 TSPAN11A1L157 253 aa14.63□□□□□ -0.07
SHMT2-210ENST00000553950 CHURC1-FNTBB4DL54 471 aa14.63□□□□□ -0.07
SHMT2-210ENST00000553950 SIN3BO75182 1162 aa14.63□□□□□ -0.07
SHMT2-210ENST00000553950 PGLSO95336 258 aa14.63□□□□□ -0.07
SHMT2-210ENST00000553950 KLF8O95600 359 aaPredicted RBP14.63□□□□□ -0.07
SHMT2-210ENST00000553950 ADH1BP00325 375 aa14.63□□□□□ -0.07
SHMT2-210ENST00000553950 UQCRHP07919 91 aa14.63□□□□□ -0.07
SHMT2-210ENST00000553950 ALADP13716 330 aa14.63□□□□□ -0.07
SHMT2-210ENST00000553950 ADRA1AP35348 466 aa14.63□□□□□ -0.07
SHMT2-210ENST00000553950 CARSP49589 748 aaKnown RBP14.63□□□□□ -0.07
SHMT2-210ENST00000553950 VSNL1P62760 191 aa14.63□□□□□ -0.07
SHMT2-210ENST00000553950 CBLBQ13191 982 aa14.63□□□□□ -0.07
SHMT2-210ENST00000553950 UBXN2BQ14CS0 331 aa14.63□□□□□ -0.07
SHMT2-210ENST00000553950 SLC1A5Q15758 541 aa14.63□□□□□ -0.07
SHMT2-210ENST00000553950 C9orf64Q5T6V5 341 aa14.63□□□□□ -0.07
SHMT2-210ENST00000553950 ANKRD22Q5VYY1 191 aa14.63□□□□□ -0.07
SHMT2-210ENST00000553950 ZNF776Q68DI1 518 aaPredicted RBP14.63□□□□□ -0.07
SHMT2-210ENST00000553950 USP45Q70EL2 814 aa14.63□□□□□ -0.07
SHMT2-210ENST00000553950 CCNJLQ8IV13 435 aa14.63□□□□□ -0.07
SHMT2-210ENST00000553950 IL17RCQ8NAC3 791 aa14.63□□□□□ -0.07
SHMT2-210ENST00000553950 OR6K2Q8NGY2 324 aa14.63□□□□□ -0.07
SHMT2-210ENST00000553950 RPLP0P6Q8NHW5 317 aa14.63□□□□□ -0.07
SHMT2-210ENST00000553950 PTCD2Q8WV60 388 aaKnown RBP14.63□□□□□ -0.07
SHMT2-210ENST00000553950 EZH1Q92800 747 aaPredicted RBP14.63□□□□□ -0.07
SHMT2-210ENST00000553950 PARD6BQ9BYG5 372 aa14.63□□□□□ -0.07
SHMT2-210ENST00000553950 IL22Q9GZX6 179 aa14.63□□□□□ -0.07
SHMT2-210ENST00000553950 CASS4Q9NQ75 786 aa14.63□□□□□ -0.07
SHMT2-210ENST00000553950 UBP1Q9NZI7 540 aa14.63□□□□□ -0.07
SHMT2-210ENST00000553950 SAMD15Q9P1V8 674 aa14.63□□□□□ -0.07
SHMT2-210ENST00000553950 DKK3Q9UBP4 350 aa14.63□□□□□ -0.07
SHMT2-210ENST00000553950 MUTYHQ9UIF7 546 aa14.63□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms