RNA–Protein interactions for RNA: ENST00000553949.1

SHMT2-209, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-209ENST00000553949 SOCS5O75159 536 aa12.36□□□□□ -0.43
SHMT2-209ENST00000553949 METTL18O95568 372 aa12.36□□□□□ -0.43
SHMT2-209ENST00000553949 ECEL1O95672 775 aa12.36□□□□□ -0.43
SHMT2-209ENST00000553949 GAS8O95995 478 aa12.36□□□□□ -0.43
SHMT2-209ENST00000553949 MT-CYBP00156 380 aaPredicted RBP12.36□□□□□ -0.43
SHMT2-209ENST00000553949 ACADMP11310 421 aa12.36□□□□□ -0.43
SHMT2-209ENST00000553949 ITGB7P26010 798 aa12.36□□□□□ -0.43
SHMT2-209ENST00000553949 PSMB4P28070 264 aa12.36□□□□□ -0.43
SHMT2-209ENST00000553949 RPL22P35268 128 aaKnown RBP12.36□□□□□ -0.43
SHMT2-209ENST00000553949 PTGIRP43119 386 aa12.36□□□□□ -0.43
SHMT2-209ENST00000553949 CSTF1Q05048 431 aaKnown RBP12.36□□□□□ -0.43
SHMT2-209ENST00000553949 C2orf54Q08AI8 447 aa12.36□□□□□ -0.43
SHMT2-209ENST00000553949 DMWDQ09019 674 aa12.36□□□□□ -0.43
SHMT2-209ENST00000553949 TRAF2Q12933 501 aa12.36□□□□□ -0.43
SHMT2-209ENST00000553949 PRPSAP1Q14558 356 aa12.36□□□□□ -0.43
SHMT2-209ENST00000553949 SLC14A2Q15849 920 aa12.36□□□□□ -0.43
SHMT2-209ENST00000553949 KCTD19Q17RG1 926 aaPredicted RBP12.36□□□□□ -0.43
SHMT2-209ENST00000553949 TTC31Q49AM3 519 aaPredicted RBP12.36□□□□□ -0.43
SHMT2-209ENST00000553949 CFAP58Q5T655 872 aa12.36□□□□□ -0.43
SHMT2-209ENST00000553949 HDDC3Q8N4P3 179 aa12.36□□□□□ -0.43
SHMT2-209ENST00000553949 AADATQ8N5Z0 425 aa12.36□□□□□ -0.43
SHMT2-209ENST00000553949 HCAR2Q8TDS4 363 aa12.36□□□□□ -0.43
SHMT2-209ENST00000553949 SLCO2A1Q92959 643 aa12.36□□□□□ -0.43
SHMT2-209ENST00000553949 ARRDC3Q96B67 414 aa12.36□□□□□ -0.43
SHMT2-209ENST00000553949 ECHDC3Q96DC8 303 aa12.36□□□□□ -0.43
SHMT2-209ENST00000553949 OXNAD1Q96HP4 312 aaPredicted RBP12.36□□□□□ -0.43
SHMT2-209ENST00000553949 KLHL32Q96NJ5 620 aa12.36□□□□□ -0.43
SHMT2-209ENST00000553949 KRT12Q99456 494 aa12.36□□□□□ -0.43
SHMT2-209ENST00000553949 GORASP1Q9BQQ3 440 aa12.36□□□□□ -0.43
SHMT2-209ENST00000553949 LRFN3Q9BTN0 628 aa12.36□□□□□ -0.43
SHMT2-209ENST00000553949 TDRD1Q9BXT4 1180 aaKnown RBP12.36□□□□□ -0.43
SHMT2-209ENST00000553949 PCDH9Q9HC56 1237 aa12.36□□□□□ -0.43
SHMT2-209ENST00000553949 DYRK4Q9NR20 520 aa12.36□□□□□ -0.43
SHMT2-209ENST00000553949 UBP1Q9NZI7 540 aa12.36□□□□□ -0.43
SHMT2-209ENST00000553949 PAK5Q9P286 719 aa12.36□□□□□ -0.43
SHMT2-209ENST00000553949 DKK3Q9UBP4 350 aa12.36□□□□□ -0.43
SHMT2-209ENST00000553949 FAM153AQ9UHL3 310 aa12.36□□□□□ -0.43
SHMT2-209ENST00000553949 FBXO4Q9UKT5 387 aa12.36□□□□□ -0.43
SHMT2-209ENST00000553949 NEU2Q9Y3R4 380 aa12.36□□□□□ -0.43
SHMT2-209ENST00000553949 CKAP5Q14008 2032 aa12.36□□□□□ -0.43
SHMT2-209ENST00000553949 ZDBF2Q9HCK1 2354 aa12.36□□□□□ -0.43
SHMT2-209ENST00000553949 A0A1W2PP55 124 aa12.35□□□□□ -0.43
SHMT2-209ENST00000553949 TSPAN11A1L157 253 aa12.35□□□□□ -0.43
SHMT2-209ENST00000553949 C16orf96A6NNT2 1141 aa12.35□□□□□ -0.43
SHMT2-209ENST00000553949 PLK4O00444 970 aa12.35□□□□□ -0.43
SHMT2-209ENST00000553949 AXIN1O15169 862 aa12.35□□□□□ -0.43
SHMT2-209ENST00000553949 PMPCBO75439 489 aa12.35□□□□□ -0.43
SHMT2-209ENST00000553949 RNASEH2AO75792 299 aaKnown RBP12.35□□□□□ -0.43
SHMT2-209ENST00000553949 ANXA9O76027 345 aa12.35□□□□□ -0.43
SHMT2-209ENST00000553949 PGLSO95336 258 aa12.35□□□□□ -0.43
SHMT2-209ENST00000553949 KRT14P02533 472 aa12.35□□□□□ -0.43
SHMT2-209ENST00000553949 DRD3P35462 400 aa12.35□□□□□ -0.43
SHMT2-209ENST00000553949 TPMTP51580 245 aa12.35□□□□□ -0.43
SHMT2-209ENST00000553949 NUBP1P53384 320 aa12.35□□□□□ -0.43
SHMT2-209ENST00000553949 DR1Q01658 176 aa12.35□□□□□ -0.43
SHMT2-209ENST00000553949 CNTN1Q12860 1018 aa12.35□□□□□ -0.43
SHMT2-209ENST00000553949 SFSWAPQ12872 951 aaKnown RBP12.35□□□□□ -0.43
SHMT2-209ENST00000553949 MPP3Q13368 585 aa12.35□□□□□ -0.43
SHMT2-209ENST00000553949 TRIP13Q15645 432 aaPredicted RBP12.35□□□□□ -0.43
SHMT2-209ENST00000553949 PCSK7Q16549 785 aa12.35□□□□□ -0.43
SHMT2-209ENST00000553949 FAXCQ5TGI0 409 aa12.35□□□□□ -0.43
SHMT2-209ENST00000553949 KDELC1Q6UW63 502 aa12.35□□□□□ -0.43
SHMT2-209ENST00000553949 C4orf22Q6V702 233 aa12.35□□□□□ -0.43
SHMT2-209ENST00000553949 USP30Q70CQ3 517 aa12.35□□□□□ -0.43
SHMT2-209ENST00000553949 ERN2Q76MJ5 926 aaKnown RBP12.35□□□□□ -0.43
SHMT2-209ENST00000553949 PARS2Q7L3T8 475 aaKnown RBP12.35□□□□□ -0.43
SHMT2-209ENST00000553949 ZSWIM9Q86XI8 627 aa12.35□□□□□ -0.43
SHMT2-209ENST00000553949 TAB3Q8N5C8 712 aaPredicted RBP12.35□□□□□ -0.43
SHMT2-209ENST00000553949 MNS1Q8NEH6 495 aa12.35□□□□□ -0.43
SHMT2-209ENST00000553949 GANCQ8TET4 914 aa12.35□□□□□ -0.43
SHMT2-209ENST00000553949 PDCD6IPQ8WUM4 868 aaKnown RBP12.35□□□□□ -0.43
SHMT2-209ENST00000553949 PPP1R2P1Q96PQ5 205 aa12.35□□□□□ -0.43
SHMT2-209ENST00000553949 OMDQ99983 421 aa12.35□□□□□ -0.43
SHMT2-209ENST00000553949 MLPHQ9BV36 600 aaPredicted RBP12.35□□□□□ -0.43
SHMT2-209ENST00000553949 HDAC8Q9BY41 377 aa12.35□□□□□ -0.43
SHMT2-209ENST00000553949 TPSD1Q9BZJ3 242 aa12.35□□□□□ -0.43
SHMT2-209ENST00000553949 CD93Q9NPY3 652 aa12.35□□□□□ -0.43
SHMT2-209ENST00000553949 ITM2CQ9NQX7 267 aa12.35□□□□□ -0.43
SHMT2-209ENST00000553949 VPS45Q9NRW7 570 aa12.35□□□□□ -0.43
SHMT2-209ENST00000553949 FBXL12Q9NXK8 326 aa12.35□□□□□ -0.43
SHMT2-209ENST00000553949 USP36Q9P275 1121 aaKnown RBP12.35□□□□□ -0.43
SHMT2-209ENST00000553949 SERGEFQ9UGK8 458 aa12.35□□□□□ -0.43
SHMT2-209ENST00000553949 AAR2Q9Y312 384 aaKnown RBP12.35□□□□□ -0.43
SHMT2-209ENST00000553949 SHROOM3Q8TF72 1996 aa12.35□□□□□ -0.43
SHMT2-209ENST00000553949 CCDC163A0A0D9SF12 145 aa12.34□□□□□ -0.43
SHMT2-209ENST00000553949 A0A1W2PQ67 120 aa12.34□□□□□ -0.43
SHMT2-209ENST00000553949 GALR2O43603 387 aaPredicted RBP12.34□□□□□ -0.43
SHMT2-209ENST00000553949 FZD6O60353 706 aa12.34□□□□□ -0.43
SHMT2-209ENST00000553949 ZNF217O75362 1048 aa12.34□□□□□ -0.43
SHMT2-209ENST00000553949 IGLV3-19P01714 112 aa12.34□□□□□ -0.43
SHMT2-209ENST00000553949 TIMP2P16035 220 aa12.34□□□□□ -0.43
SHMT2-209ENST00000553949 CA4P22748 312 aa12.34□□□□□ -0.43
SHMT2-209ENST00000553949 FDFT1P37268 417 aa12.34□□□□□ -0.43
SHMT2-209ENST00000553949 P2RY2P41231 377 aa12.34□□□□□ -0.43
SHMT2-209ENST00000553949 FNTBP49356 437 aa12.34□□□□□ -0.43
SHMT2-209ENST00000553949 VPS41P49754 854 aa12.34□□□□□ -0.43
SHMT2-209ENST00000553949 NEK3P51956 506 aa12.34□□□□□ -0.43
SHMT2-209ENST00000553949 GEMP55040 296 aa12.34□□□□□ -0.43
SHMT2-209ENST00000553949 WNT3AP56704 352 aa12.34□□□□□ -0.43
SHMT2-209ENST00000553949 DHX34Q14147 1143 aaKnown RBP12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms