RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 PELI3Q8N2H9 469 aa4.9□□□□□ -1.62
LIMA1-214ENST00000552783 DNAAF3Q8N9W5 541 aa4.9□□□□□ -1.62
LIMA1-214ENST00000552783 TXNDC5Q8NBS9 432 aaKnown RBP4.9□□□□□ -1.62
LIMA1-214ENST00000552783 BPIFB6Q8NFQ5 453 aa4.9□□□□□ -1.62
LIMA1-214ENST00000552783 SPPL2BQ8TCT7 592 aa4.9□□□□□ -1.62
LIMA1-214ENST00000552783 EVPLQ92817 2033 aa4.9□□□□□ -1.62
LIMA1-214ENST00000552783 ISL2Q96A47 359 aa4.9□□□□□ -1.62
LIMA1-214ENST00000552783 NXNL1Q96CM4 212 aa4.9□□□□□ -1.62
LIMA1-214ENST00000552783 FAM167AQ96KS9 214 aa4.9□□□□□ -1.62
LIMA1-214ENST00000552783 CPNE1Q99829 537 aa4.9□□□□□ -1.62
LIMA1-214ENST00000552783 ZNF670Q9BS34 389 aa4.9□□□□□ -1.62
LIMA1-214ENST00000552783 MTG1Q9BT17 334 aaPredicted RBP4.9□□□□□ -1.62
LIMA1-214ENST00000552783 ADI1Q9BV57 179 aa4.9□□□□□ -1.62
LIMA1-214ENST00000552783 SPATC1LQ9H0A9 340 aa4.9□□□□□ -1.62
LIMA1-214ENST00000552783 DPEP3Q9H4B8 488 aa4.9□□□□□ -1.62
LIMA1-214ENST00000552783 PRDM12Q9H4Q4 367 aa4.9□□□□□ -1.62
LIMA1-214ENST00000552783 PTPRHQ9HD43 1115 aa4.9□□□□□ -1.62
LIMA1-214ENST00000552783 MAP3K20Q9NYL2 800 aaKnown RBP4.9□□□□□ -1.62
LIMA1-214ENST00000552783 XPR1Q9UBH6 696 aa4.9□□□□□ -1.62
LIMA1-214ENST00000552783 MORF4L1Q9UBU8 362 aa4.9□□□□□ -1.62
LIMA1-214ENST00000552783 OAZ3Q9UMX2 235 aa4.9□□□□□ -1.62
LIMA1-214ENST00000552783 RUVBL2Q9Y230 463 aaKnown RBP4.9□□□□□ -1.62
LIMA1-214ENST00000552783 CDYLQ9Y232 598 aa4.9□□□□□ -1.62
LIMA1-214ENST00000552783 MAGED1Q9Y5V3 778 aaPredicted RBP4.9□□□□□ -1.62
LIMA1-214ENST00000552783 DGKBQ9Y6T7 804 aa4.9□□□□□ -1.62
LIMA1-214ENST00000552783 SHROOM3Q8TF72 1996 aa4.9□□□□□ -1.62
LIMA1-214ENST00000552783 COL11A1P12107 1806 aaPredicted RBP4.9□□□□□ -1.63
LIMA1-214ENST00000552783 A6NL46 340 aa4.9□□□□□ -1.63
LIMA1-214ENST00000552783 SOBPA7XYQ1 873 aa4.9□□□□□ -1.63
LIMA1-214ENST00000552783 ZBTB42B2RXF5 422 aa4.9□□□□□ -1.63
LIMA1-214ENST00000552783 TMEM114B3SHH9 223 aa4.9□□□□□ -1.63
LIMA1-214ENST00000552783 I6L893 689 aaPredicted RBP4.9□□□□□ -1.63
LIMA1-214ENST00000552783 PPP6CO00743 305 aa4.9□□□□□ -1.63
LIMA1-214ENST00000552783 ACOX3O15254 700 aa4.9□□□□□ -1.63
LIMA1-214ENST00000552783 DDNO94850 711 aaPredicted RBP4.9□□□□□ -1.63
LIMA1-214ENST00000552783 POLBP06746 335 aa4.9□□□□□ -1.63
LIMA1-214ENST00000552783 CES1P23141 567 aa4.9□□□□□ -1.63
LIMA1-214ENST00000552783 NFKBIAP25963 317 aa4.9□□□□□ -1.63
LIMA1-214ENST00000552783 SLC7A1P30825 629 aa4.9□□□□□ -1.63
LIMA1-214ENST00000552783 CSRP3P50461 194 aa4.9□□□□□ -1.63
LIMA1-214ENST00000552783 KCNC4Q03721 635 aa4.9□□□□□ -1.63
LIMA1-214ENST00000552783 NFATC3Q12968 1075 aa4.9□□□□□ -1.63
LIMA1-214ENST00000552783 CTBP1Q13363 440 aa4.9□□□□□ -1.63
LIMA1-214ENST00000552783 DPYSQ14117 519 aa4.9□□□□□ -1.63
LIMA1-214ENST00000552783 NR1D2Q14995 579 aa4.9□□□□□ -1.63
LIMA1-214ENST00000552783 TMEM132DQ14C87 1099 aa4.9□□□□□ -1.63
LIMA1-214ENST00000552783 DPYSL2Q16555 572 aa4.9□□□□□ -1.63
LIMA1-214ENST00000552783 CLEC6AQ6EIG7 209 aa4.9□□□□□ -1.63
LIMA1-214ENST00000552783 SLC2A7Q6PXP3 512 aa4.9□□□□□ -1.63
LIMA1-214ENST00000552783 ZYG11AQ6WRX3 759 aa4.9□□□□□ -1.63
LIMA1-214ENST00000552783 CATSPERGQ6ZRH7 1159 aa4.9□□□□□ -1.63
LIMA1-214ENST00000552783 IGFN1Q86VF2 1251 aa4.9□□□□□ -1.63
LIMA1-214ENST00000552783 APOBEC3FQ8IUX4 373 aaKnown RBP4.9□□□□□ -1.63
LIMA1-214ENST00000552783 FUNDC1Q8IVP5 155 aa4.9□□□□□ -1.63
LIMA1-214ENST00000552783 HM13Q8TCT9 377 aa4.9□□□□□ -1.63
LIMA1-214ENST00000552783 CHPT1Q8WUD6 406 aa4.9□□□□□ -1.63
LIMA1-214ENST00000552783 VPS50Q96JG6 964 aa4.9□□□□□ -1.63
LIMA1-214ENST00000552783 SCYL1Q96KG9 808 aa4.9□□□□□ -1.63
LIMA1-214ENST00000552783 C3orf30Q96M34 536 aa4.9□□□□□ -1.63
LIMA1-214ENST00000552783 TEPSINQ96N21 525 aa4.9□□□□□ -1.63
LIMA1-214ENST00000552783 GPR78Q96P69 363 aa4.9□□□□□ -1.63
LIMA1-214ENST00000552783 DOK1Q99704 481 aa4.9□□□□□ -1.63
LIMA1-214ENST00000552783 MRPL45Q9BRJ2 306 aaKnown RBP4.9□□□□□ -1.63
LIMA1-214ENST00000552783 MED10Q9BTT4 135 aa4.9□□□□□ -1.63
LIMA1-214ENST00000552783 SIAEQ9HAT2 523 aa4.9□□□□□ -1.63
LIMA1-214ENST00000552783 PRM3Q9NNZ6 103 aa4.9□□□□□ -1.63
LIMA1-214ENST00000552783 PDGFCQ9NRA1 345 aa4.9□□□□□ -1.63
LIMA1-214ENST00000552783 VPS45Q9NRW7 570 aa4.9□□□□□ -1.63
LIMA1-214ENST00000552783 TBC1D23Q9NUY8 699 aa4.9□□□□□ -1.63
LIMA1-214ENST00000552783 FAM32AQ9Y421 112 aaKnown RBP4.9□□□□□ -1.63
LIMA1-214ENST00000552783 SQORQ9Y6N5 450 aa4.9□□□□□ -1.63
LIMA1-214ENST00000552783 V9GYQ6 96 aa4.9□□□□□ -1.63
LIMA1-214ENST00000552783 KRBA1A5PL33 1030 aa4.9□□□□□ -1.63
LIMA1-214ENST00000552783 TRIM64A6NGJ6 449 aa4.9□□□□□ -1.63
LIMA1-214ENST00000552783 H0Y858 1186 aa4.9□□□□□ -1.63
LIMA1-214ENST00000552783 NME4O00746 187 aa4.9□□□□□ -1.63
LIMA1-214ENST00000552783 TOR1BO14657 336 aa4.9□□□□□ -1.63
LIMA1-214ENST00000552783 EI24O14681 340 aa4.9□□□□□ -1.63
LIMA1-214ENST00000552783 MDM4O15151 490 aa4.9□□□□□ -1.63
LIMA1-214ENST00000552783 SNAP29O95721 258 aa4.9□□□□□ -1.63
LIMA1-214ENST00000552783 MTHFD1P11586 935 aaKnown RBP4.9□□□□□ -1.63
LIMA1-214ENST00000552783 INSRRP14616 1297 aa4.9□□□□□ -1.63
LIMA1-214ENST00000552783 CDH3P22223 829 aa4.9□□□□□ -1.63
LIMA1-214ENST00000552783 BDNFP23560 247 aa4.9□□□□□ -1.63
LIMA1-214ENST00000552783 DCKP27707 260 aa4.9□□□□□ -1.63
LIMA1-214ENST00000552783 HMOX2P30519 316 aa4.9□□□□□ -1.63
LIMA1-214ENST00000552783 GNL1P36915 607 aaPredicted RBP4.9□□□□□ -1.63
LIMA1-214ENST00000552783 MPP1Q00013 466 aa4.9□□□□□ -1.63
LIMA1-214ENST00000552783 MERTKQ12866 999 aa4.9□□□□□ -1.63
LIMA1-214ENST00000552783 RFTN1Q14699 578 aaPredicted RBP4.9□□□□□ -1.63
LIMA1-214ENST00000552783 CARTPTQ16568 116 aa4.9□□□□□ -1.63
LIMA1-214ENST00000552783 PERM1Q5SV97 790 aa4.9□□□□□ -1.63
LIMA1-214ENST00000552783 GRTP1Q5TC63 336 aa4.9□□□□□ -1.63
LIMA1-214ENST00000552783 LIPMQ5VYY2 423 aa4.9□□□□□ -1.63
LIMA1-214ENST00000552783 METTL7BQ6UX53 244 aa4.9□□□□□ -1.63
LIMA1-214ENST00000552783 ZPBP2Q6X784 338 aa4.9□□□□□ -1.63
LIMA1-214ENST00000552783 CADM3Q8N126 398 aa4.9□□□□□ -1.63
LIMA1-214ENST00000552783 Q8N9G6 341 aaPredicted RBP4.9□□□□□ -1.63
LIMA1-214ENST00000552783 SERBP1Q8NC51 408 aaKnown RBP eCLIP4.9□□□□□ -1.63
LIMA1-214ENST00000552783 DDHD1Q8NEL9 900 aa4.9□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms